View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12991_low_43 (Length: 235)
Name: NF12991_low_43
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12991_low_43 |
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| [»] scaffold1583 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 12921869 - 12921650
Alignment:
| Q |
1 |
aagcttgaaacaagggtttagaaatcatgtctagaggcatgatgtttagtggtggttcatcttctgaagtgtttggttgttgttgagttagaagaggata |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||| | |
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| T |
12921869 |
aagcttgaaacaagggtttattaatcatgtctagaggcatgatgtttaatggtggttcatcttctggagagtttggttgttgttgagttagaagaggaga |
12921770 |
T |
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| Q |
101 |
cagagatgtctttaatggcggcggtgagagtggtggagattttggagacggtggtcttttgtttaggtcaggtggagtaggtggtggaggacgagaaggt |
200 |
Q |
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| T |
12921769 |
cagagatgtctctgatggcggtggtgagagtggtggagagtttgaaaatggtggtgttttgtttaggtcaggtggagaaggtggtggaggaggagaaggt |
12921670 |
T |
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| Q |
201 |
gaacacggtgaaggtggtgg |
220 |
Q |
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| T |
12921669 |
gaccacggtgaaggcggtgg |
12921650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1583 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold1583
Description:
Target: scaffold1583; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 912 - 688
Alignment:
| Q |
1 |
aagcttgaaacaagggtttagaaatcatgtctagaggcatgatgtttagtggtggttcatcttctgaagtgtttggttgttgttgagttagaagaggata |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| | |
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| T |
912 |
aagcttgaaacaagggtttactaatcatgtctagaggcatgatgtttagtggtggttcatcttctggagtgtttggttggtgttgagttagaagaggaga |
813 |
T |
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| Q |
101 |
cagagatgtctttaatggcggcggtgagagtggtggagattttggagacggtggtcttttgtttaggtcaggtggagtaggtggtggaggacgagaaggt |
200 |
Q |
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| T |
812 |
cagagatgaatctgatggcggcggtgagagtggtggcgagtttggagatggtggtgttttgtttaggtctggtggagaaggtggtggaggaggagaaggt |
713 |
T |
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| Q |
201 |
gaacacggtgaaggtggtggtgatg |
225 |
Q |
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| T |
712 |
gaccatggtgaaggcggtggcgatg |
688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 14275775 - 14275999
Alignment:
| Q |
1 |
aagcttgaaacaagggtttagaaatcatgtctagaggcatgatgtttagtggtggttcatcttctgaagtgtttggttgttgttgagttagaagaggata |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| | |
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| T |
14275775 |
aagcttgaaacaagggtttactaatcatgtctagaggcatgatgtttagtggtggttcatcttctggagtgtttggttggtgttgagttagaagaggaga |
14275874 |
T |
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| Q |
101 |
cagagatgtctttaatggcggcggtgagagtggtggagattttggagacggtggtcttttgtttaggtcaggtggagtaggtggtggaggacgagaaggt |
200 |
Q |
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| T |
14275875 |
cagagatgaatctgatggcggcggtgagagtggtggagagtttggagatggcggtgttttgtttaggtcaggtggagaaggtggtggaggaggagacagt |
14275974 |
T |
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| Q |
201 |
gaacacggtgaaggtggtggtgatg |
225 |
Q |
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| T |
14275975 |
gaccatggtgaaggcggtggcgatg |
14275999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 14638497 - 14638721
Alignment:
| Q |
1 |
aagcttgaaacaagggtttagaaatcatgtctagaggcatgatgtttagtggtggttcatcttctgaagtgtttggttgttgttgagttagaagaggata |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
14638497 |
aagcttgaaacaagggtttactaatcatgtctagaggcatgatgtttagtggtggttcatcttctggagtgtttggttgttgttgagttagaagaggaga |
14638596 |
T |
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| Q |
101 |
cagagatgtctttaatggcggcggtgagagtggtggagattttggagacggtggtcttttgtttaggtcaggtggagtaggtggtggaggacgagaaggt |
200 |
Q |
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|||||||| | | |||| ||||||||||||||||| || |||||||| |||||| ||||||| ||||| ||||||| ||||||||||||| ||||| || |
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| T |
14638597 |
cagagatgaatctgatggtggcggtgagagtggtggcgagtttggagatggtggtgttttgttcaggtctggtggagaaggtggtggaggaggagaatgt |
14638696 |
T |
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| Q |
201 |
gaacacggtgaaggtggtggtgatg |
225 |
Q |
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| T |
14638697 |
gaccgtggtgaaggtggtggcgatg |
14638721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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