View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12991_low_45 (Length: 226)
Name: NF12991_low_45
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12991_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 4301714 - 4301929
Alignment:
| Q |
1 |
atacaagaatatagtgatgttgttggggtactgttgcaaagaaaataaaaatattatcatatatgaatttatttgcgataagtctcttcattggtattta |
100 |
Q |
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| T |
4301714 |
atacaagaatatagtgatgttgttggggtactgttgcaaagaaaataaaaatattatcatatatgaatttatttgcgataagtctcttcattggtattta |
4301813 |
T |
|
| Q |
101 |
tttgaaaatagtgaagtagttattgattggcctcgaagatatggtattgcacttgggattgtatttgagaaaagaggaattgataaaacacaacccttga |
200 |
Q |
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| T |
4301814 |
tttgaaaatagtgaagtagttattgattggcctcgaagatatggtattgcacttgggattgtatttgagaaaagaggaattgataaaacacaacccttga |
4301913 |
T |
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| Q |
201 |
aatttgtaactgatga |
216 |
Q |
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|||||||||||||||| |
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| T |
4301914 |
aatttgtaactgatga |
4301929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 40668126 - 40668227
Alignment:
| Q |
3 |
acaagaatatagtgatgttgttggggtactgttgcaaagaaaataaaaatattatcatatatgaatttatttgcgataagtctcttcattggtatttatt |
102 |
Q |
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||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||| ||||||| |
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| T |
40668126 |
acaagaatatagtgatgctgttggggtattgttgcaaagaaaataaaaatattctcatatatgaatatatttgcaataagtctcttcattggcatttatt |
40668225 |
T |
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| Q |
103 |
tg |
104 |
Q |
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|| |
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| T |
40668226 |
tg |
40668227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 40668312 - 40668369
Alignment:
| Q |
104 |
gaaaatagtgaagtagttattgattggcctcgaagatatggtattgcacttgggattg |
161 |
Q |
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| T |
40668312 |
gaaaatagtgaagcagttcttgattggtctcaaagatatggtattgcacttgggattg |
40668369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 5085365 - 5085421
Alignment:
| Q |
160 |
tgtatttgagaaaagaggaattgataaaacacaacccttgaaatttgtaactgatga |
216 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5085365 |
tgtattcgagaaaagaggaattgatgaaacacaacccttgaaatttgtaactgatga |
5085421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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