View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12991_low_5 (Length: 769)
Name: NF12991_low_5
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12991_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 511; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 3 - 562
Target Start/End: Complemental strand, 43513613 - 43513052
Alignment:
| Q |
3 |
gatgaagatctgaaaaatataattgaagaatacgatcgcgcttcttcatcattaattcatccattgaagatcagagccattctttcaccgcccaaatcat |
102 |
Q |
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| T |
43513613 |
gatgaagatctgaaaaatataattgaagaatacgatcgagcttcttcatcattaattcatccattgaagatcagagccattctttcaccgcccaaatcat |
43513514 |
T |
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| Q |
103 |
tcaagaaattatctcctcctccgtcttcttcgtccagctcaactcactctctgcctggttcacctcatgccttcgtggaatcaccgtcgtatgtggctat |
202 |
Q |
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| T |
43513513 |
tcaagaaattatctcctcctccgtcttcttcgtccagctcaactcactctctgcctggttcgcctcatgccttcgtggaatcaccgtcgtatgtggctgt |
43513414 |
T |
|
| Q |
203 |
gaatcggcttaaccgtctgaaaggtagctgttacacaaggcaattagatggaagccctagattcctttacctgttcgcaaataattattgtcattgaggc |
302 |
Q |
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| T |
43513413 |
gaatcggcttaaccgtctgaaaggtagctgttacacaaggcaattagatggaagccctagattcctttaccggttcgcaaataattattgtcattgaggc |
43513314 |
T |
|
| Q |
303 |
aaagttatgttggagctttttgtttcttctaaagagcctgtcctatgcgttagagaagtgagaaattgcagtttccacctccagccatatc--atgtcta |
400 |
Q |
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| T |
43513313 |
aaagttatgttggagatttttgtttcttctaaagagcctgtcctatgcgttagagaagtgagaaattgcagtttccacctccagccatatcaaatgtcta |
43513214 |
T |
|
| Q |
401 |
tgtagtcttttatcatttgagttgtgtttacgagattcagagagtcgggtgtaaatagcaaatagataatagttgatgatgattgaaaatatgaaagatt |
500 |
Q |
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| T |
43513213 |
tctagtcttttatcatttgagttgtgtttacgagattcagagagtcgggtgtaaatagcaaatagataatagttgatgatgatgaaaaatatcaaagatt |
43513114 |
T |
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| Q |
501 |
ggcactcaatccgtagtagggtgtaaatggcaaaaacagatttgaaatagagcttgagcttc |
562 |
Q |
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| T |
43513113 |
ggcactcaatctgtagtagggtgtaaatggcaaaaacagatttgaaatagagcttgagcttc |
43513052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 629 - 755
Target Start/End: Complemental strand, 43512986 - 43512861
Alignment:
| Q |
629 |
acttctaatgtaaaaaatataaaagaataagagattgagcttgaaattgttcctaatgggaatctgaatttgtacgtgtaaataattttagttactacca |
728 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
43512986 |
acttctaatgtaaaaa-tataaaagaataagagattgagcttgaaattgttcctaatggggatctgaatttgtacatgtaaataattttagttactacca |
43512888 |
T |
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| Q |
729 |
atttgagatcagatgacgttaaatgtg |
755 |
Q |
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| T |
43512887 |
atttgagatcagatgacgttaaatgtg |
43512861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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