View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12991_low_6 (Length: 756)
Name: NF12991_low_6
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12991_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 187 - 746
Target Start/End: Complemental strand, 31269039 - 31268477
Alignment:
| Q |
187 |
taaaaacaaaggtggacacaacttgtgcatgatcaaattcttatgacacac-aaatgatattcatatcgaaagaattggtgatatgattcttctccaacn |
285 |
Q |
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| T |
31269039 |
taaaaagaaaggtggacccaacttgtgcatgatcaaattctcatgacacaccaaatgatattcatattgaaagaattgttgatatgattcttctccaaca |
31268940 |
T |
|
| Q |
286 |
nnnnnnnnnnnnctgagtttaattcttagaataactgcagtaatnnnnnnnn-cttgagtttaattcttagaataacttcggtagaaatctccactcaaa |
384 |
Q |
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|||||||||||||||||||||||| ||| ||| ||||| ||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
31268939 |
aaaacaaaaaaactgagtttaattcttagaataactccaggaataaaaaaaaacttgactttaattcttagaataact-cggtagaaatctctactcaaa |
31268841 |
T |
|
| Q |
385 |
aattattttgtgaatttcattaagttatctcatcttaaaataactcattctttt-gttttttcttcaacggtctcacgattttaacttacatattattat |
483 |
Q |
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| T |
31268840 |
agttattttgtgaatttcattgagttatctcatcttaaaataactcattctttttgttttttcttcaacggtctcacgattttaatttacatattaatat |
31268741 |
T |
|
| Q |
484 |
tttataaatatggtagtttggtgcactaaagctcttgcatatgcatgatctgaaaatggtcataccgattaatgtattatttacaatcttaccctatatt |
583 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| ||||||| || |||||| ||||||||||| |||||||||| ||||||||||||||||| |
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| T |
31268740 |
tttataaatatggtagtttggtgcactaaagctgttgcatacgcatgatttggaaatggccataccgattagtgtattatttgcaatcttaccctatatt |
31268641 |
T |
|
| Q |
584 |
ttacacaaaagattgtttccaagatttaaattcatgacatttcaatcacgt-ccaataatattatcattgcgtcaaaactccccttcatattaatattta |
682 |
Q |
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| T |
31268640 |
ttacacaaaaggttgtttctaagatttaaactcatgacatttcagtcacgtgacaataatattatcattgcgtcaaaactccccttcatattaatattta |
31268541 |
T |
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| Q |
683 |
atcaaaattcttaaagtaacgttacttactgaagttattgtgatgccaccttatcgaacctatg |
746 |
Q |
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| T |
31268540 |
atcaaaattctcaaagtaacgttacttactgaagtcattgtgatgccaccttatcgaacctatg |
31268477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 31270090 - 31269917
Alignment:
| Q |
19 |
catttcatatcaattcaaacacacggaaataaattttacccatcagtggggcaaccatccattattggaaattccctactagttgtttagcaattatttg |
118 |
Q |
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| T |
31270090 |
catttcatatcaattcaaacacacggaaataaattttacccatcagtggggcaaccatccattattggaaattccctactagttgtttagcaattatttg |
31269991 |
T |
|
| Q |
119 |
ttgtaattctattccccgaatgtttttgccattttttctttatttaaaggtggacacggtttttggtataaaaa |
192 |
Q |
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| T |
31269990 |
ttgtaattctattccccgaatgtttttgccattttttctttatttaaaggtggacacggtttttggtataaaaa |
31269917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 582 - 631
Target Start/End: Complemental strand, 10250413 - 10250364
Alignment:
| Q |
582 |
ttttacacaaaagattgtttccaagatttaaattcatgacatttcaatca |
631 |
Q |
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|||||||||| ||||||||||||||| ||| ||| ||||||||||||||| |
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| T |
10250413 |
ttttacacaagagattgtttccaagacttatatttatgacatttcaatca |
10250364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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