View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12991_low_7 (Length: 728)

Name: NF12991_low_7
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12991_low_7
NF12991_low_7
[»] chr3 (20 HSPs)
chr3 (620-712)||(30404057-30404149)
chr3 (620-712)||(30410620-30410718)
chr3 (175-345)||(42510020-42510189)
chr3 (620-712)||(30407788-30407886)
chr3 (175-312)||(54365012-54365148)
chr3 (175-315)||(40116502-40116641)
chr3 (224-311)||(37534241-37534327)
chr3 (227-311)||(29601052-29601136)
chr3 (224-312)||(36304123-36304211)
chr3 (228-312)||(40116375-40116459)
chr3 (175-310)||(23534609-23534743)
chr3 (224-350)||(45289090-45289216)
chr3 (233-312)||(49888356-49888432)
chr3 (182-315)||(29475804-29475934)
chr3 (201-315)||(39600715-39600829)
chr3 (201-310)||(54128512-54128622)
chr3 (9-50)||(30411070-30411111)
chr3 (176-257)||(37228192-37228272)
chr3 (271-312)||(46148232-46148273)
chr3 (285-350)||(52882661-52882726)
[»] chr8 (16 HSPs)
chr8 (137-349)||(32931036-32931242)
chr8 (201-345)||(35362654-35362798)
chr8 (224-312)||(14459052-14459140)
chr8 (175-311)||(35914639-35914774)
chr8 (201-312)||(17491691-17491802)
chr8 (205-312)||(29520787-29520894)
chr8 (175-329)||(35643628-35643779)
chr8 (224-329)||(490492-490597)
chr8 (205-312)||(39967536-39967643)
chr8 (237-312)||(43904702-43904777)
chr8 (201-352)||(45419369-45419520)
chr8 (207-309)||(7615631-7615733)
chr8 (201-311)||(14903695-14903805)
chr8 (175-309)||(30559802-30559935)
chr8 (235-345)||(44699634-44699744)
chr8 (175-312)||(30783079-30783215)
[»] chr6 (5 HSPs)
chr6 (178-312)||(8364668-8364801)
chr6 (181-345)||(34509-34672)
chr6 (201-312)||(31818665-31818776)
chr6 (201-311)||(9593748-9593856)
chr6 (175-345)||(12133906-12134074)
[»] chr7 (19 HSPs)
chr7 (175-314)||(26741929-26742069)
chr7 (175-311)||(38135251-38135386)
chr7 (203-315)||(44401161-44401271)
chr7 (178-312)||(47796189-47796322)
chr7 (201-329)||(28627953-28628081)
chr7 (207-312)||(36239833-36239938)
chr7 (224-312)||(27893600-27893688)
chr7 (222-303)||(2882782-2882863)
chr7 (271-339)||(4604751-4604819)
chr7 (272-327)||(44951360-44951415)
chr7 (281-315)||(34029710-34029744)
chr7 (228-310)||(36101816-36101898)
chr7 (201-315)||(37976369-37976483)
chr7 (224-306)||(40391866-40391948)
chr7 (201-311)||(45601610-45601720)
chr7 (225-310)||(1569174-1569259)
chr7 (271-312)||(24376060-24376101)
chr7 (175-240)||(30814780-30814844)
chr7 (201-350)||(40979927-40980076)
[»] chr2 (17 HSPs)
chr2 (201-345)||(33287555-33287699)
chr2 (202-314)||(19336928-19337041)
chr2 (175-312)||(38435061-38435197)
chr2 (177-311)||(3481264-3481398)
chr2 (201-308)||(43751988-43752095)
chr2 (224-355)||(9496023-9496154)
chr2 (201-339)||(26670902-26671040)
chr2 (176-346)||(33504333-33504503)
chr2 (229-315)||(6219127-6219213)
chr2 (242-315)||(36366811-36366884)
chr2 (176-314)||(26784375-26784512)
chr2 (224-309)||(45077884-45077971)
chr2 (262-329)||(3720435-3720502)
chr2 (175-290)||(37452285-37452399)
chr2 (271-329)||(9531620-9531678)
chr2 (275-329)||(25384677-25384731)
chr2 (271-329)||(39709221-39709279)
[»] chr4 (22 HSPs)
chr4 (178-329)||(13805285-13805435)
chr4 (177-344)||(53540401-53540567)
chr4 (137-315)||(21945675-21945845)
chr4 (228-329)||(55007907-55008008)
chr4 (202-329)||(37488226-37488353)
chr4 (207-314)||(51421870-51421977)
chr4 (201-339)||(35690405-35690543)
chr4 (240-345)||(29398977-29399082)
chr4 (224-309)||(30621241-30621326)
chr4 (203-311)||(33225873-33225979)
chr4 (143-312)||(34233061-34233225)
chr4 (176-314)||(20105553-20105690)
chr4 (225-311)||(25574982-25575068)
chr4 (267-312)||(3979120-3979165)
chr4 (224-329)||(26024870-26024975)
chr4 (224-315)||(2557705-2557797)
chr4 (201-329)||(45204860-45204987)
chr4 (175-311)||(51438562-51438689)
chr4 (271-329)||(4548226-4548284)
chr4 (199-312)||(28351691-28351804)
chr4 (176-257)||(47147483-47147563)
chr4 (227-308)||(55388252-55388333)
[»] chr5 (12 HSPs)
chr5 (178-312)||(6788179-6788312)
chr5 (201-315)||(29922418-29922532)
chr5 (179-312)||(9235162-9235292)
chr5 (201-311)||(79647-79757)
chr5 (205-311)||(6889131-6889237)
chr5 (278-315)||(43423529-43423566)
chr5 (201-329)||(30588581-30588709)
chr5 (225-312)||(418071-418158)
chr5 (204-242)||(32759713-32759751)
chr5 (228-309)||(2090574-2090655)
chr5 (176-237)||(3775179-3775239)
chr5 (280-329)||(27386553-27386602)
[»] scaffold0010 (1 HSPs)
scaffold0010 (224-345)||(160328-160449)
[»] chr1 (22 HSPs)
chr1 (176-329)||(28511821-28511973)
chr1 (229-345)||(27072491-27072607)
chr1 (224-331)||(50846719-50846826)
chr1 (225-314)||(43375633-43375722)
chr1 (224-345)||(52532620-52532741)
chr1 (201-311)||(36339842-36339951)
chr1 (201-312)||(9509452-9509563)
chr1 (175-329)||(8796318-8796471)
chr1 (201-350)||(2544732-2544876)
chr1 (201-329)||(3818876-3819004)
chr1 (272-315)||(5338918-5338961)
chr1 (271-345)||(28090698-28090772)
chr1 (201-329)||(32404546-32404674)
chr1 (201-329)||(41560363-41560491)
chr1 (224-303)||(1661576-1661655)
chr1 (247-350)||(25715325-25715428)
chr1 (201-304)||(40416505-40416608)
chr1 (201-311)||(9599432-9599542)
chr1 (271-329)||(37462896-37462954)
chr1 (253-351)||(40568408-40568506)
chr1 (271-312)||(17269026-17269067)
chr1 (271-312)||(27847837-27847878)
[»] scaffold0050 (1 HSPs)
scaffold0050 (271-329)||(58246-58304)
[»] scaffold0199 (1 HSPs)
scaffold0199 (271-315)||(14787-14831)
[»] scaffold0018 (1 HSPs)
scaffold0018 (175-264)||(178505-178593)


Alignment Details
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 620 - 712
Target Start/End: Complemental strand, 30404149 - 30404057
Alignment:
Q  620 tagaataacattaaagataccattatatgtaggactctcaactttgaccctaaagcagcaagccatgaacatagaactaattcaagaacaaag 712  Q
    |||||||||||||| ||||||||||| | ||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30404149 tagaataacattaatgataccattatgtttagaagtctcaactttgaccctaaagcagcaagccatgaacatagaagtaattcaagaacaaag 30404057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 620 - 712
Target Start/End: Complemental strand, 30410718 - 30410620
Alignment:
Q  620 tagaataacattaaagataccattatatgtaggactctcaactttgacc------ctaaagcagcaagccatgaacatagaactaattcaagaacaaag 712  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||      |||||||||||||||||||||||| |||||||||||||||||||    
T  30410718 tagaataacattaatgataccattatgtgtaggactctcaactttgacccttcctctaaagcagcaagccatgaacataaaactaattcaagaacaaag 30410620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 175 - 345
Target Start/End: Complemental strand, 42510189 - 42510020
Alignment:
Q  175 atagtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagttt 274  Q
    ||||||||||||||||| ||| | ||| |||||||||||| ||||| | |||| |||| ||||||||| ||||| || ||||| |||| ||| || ||||    
T  42510189 atagtcagatcactagaggcaaaggaa-gacctagaaaaactatcagagaaaccattaggaaagatttggaaataaatgagttggaccaaaatatggttt 42510091  T
Q  275 attattgaacattatgccgtaatttgatccatgtagccaacaaaacttagtgggaaacgacttggatgttg 345  Q
    || ||||||||||||| ||||||||||||||||||||| ||   |||||| |||||| | ||||| |||||    
T  42510090 atgattgaacattatggcgtaatttgatccatgtagccgaccccacttagagggaaaaggcttggctgttg 42510020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 620 - 712
Target Start/End: Complemental strand, 30407886 - 30407788
Alignment:
Q  620 tagaataacattaaagataccattatatgtaggactctcaactttgaccct------aaagcagcaagccatgaacatagaactaattcaagaacaaag 712  Q
    |||||||||||||   |||||||||| ||||||| | ||||||||||||||      |||||||||||||||||||||| |||||||||||||||||||    
T  30407886 tagaataacattagccataccattatgtgtaggattttcaactttgacccttgcactaaagcagcaagccatgaacataaaactaattcaagaacaaag 30407788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 312
Target Start/End: Complemental strand, 54365148 - 54365012
Alignment:
Q  175 atagtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagttt 274  Q
    ||||||||| ||| ||| ||||| ||| |||||||||||| ||| | | ||||||||| |||||| || || ||||| | ||| |||| ||| || ||||    
T  54365148 atagtcagaccacgagaggcagaggaa-gacctagaaaaactataagagaaactattaggaaagacttggagattaatgtgttagaccaaaatatggttt 54365050  T
Q  275 attattgaacattatgccgtaatttgatccatgtagcc 312  Q
    || || ||||| |||| |||||||||||||||||||||    
T  54365049 atgatagaacactatgacgtaatttgatccatgtagcc 54365012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 175 - 315
Target Start/End: Complemental strand, 40116641 - 40116502
Alignment:
Q  175 atagtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagttt 274  Q
    |||||||||||||||||  || | ||| |||||||||||| ||| | | ||||||||| || |||||| || ||||| ||||| |||||||| || ||||    
T  40116641 atagtcagatcactagagccaaaggaa-gacctagaaaaactataagagaaactattaggatagatttagagattaatgagttggaccgaaatatggttt 40116543  T
Q  275 attattgaacattatgccgtaatttgatccatgtagccaac 315  Q
    || || ||||||| || ||||||| |||| | |||||||||    
T  40116542 atgatagaacattgtggcgtaattcgatctacgtagccaac 40116502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 224 - 311
Target Start/End: Complemental strand, 37534327 - 37534241
Alignment:
Q  224 aaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagc 311  Q
    ||||||||||||||||| |||| ||||| || |||||  |||| ||||||||| |||||||||| || |||||||||||| |||||||    
T  37534327 aaactattaagaaagatcttgagattaatgaatttgattgaaatatagtttatgattgaacatt-tgtcgtaatttgatctatgtagc 37534241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 227 - 311
Target Start/End: Original strand, 29601052 - 29601136
Alignment:
Q  227 ctattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagc 311  Q
    |||||||||||||||| || ||||| ||||| ||   ||| ||||||||| || ||||||||||  |||||||||||||||||||    
T  29601052 ctattaagaaagatttagagattaatgagttggattcaaatatagtttatgatagaacattatgatgtaatttgatccatgtagc 29601136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 312
Target Start/End: Original strand, 36304123 - 36304211
Alignment:
Q  224 aaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagcc 312  Q
    ||||||||||||||||| | || ||||| ||||| || | ||| || |||||| || | |||||||| |||||||||||||||||||||    
T  36304123 aaactattaagaaagatctagagattaatgagttggatcaaaatatggtttatgataggacattatggcgtaatttgatccatgtagcc 36304211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 228 - 312
Target Start/End: Complemental strand, 40116459 - 40116375
Alignment:
Q  228 tattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagcc 312  Q
    ||||| || |||||| || ||||| ||||| |||||||| || |||||| || |||||||||| |||||||||||||| ||||||    
T  40116459 tattaggatagatttagagattaatgagttggaccgaaatatggtttatgatagaacattatggcgtaatttgatccacgtagcc 40116375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 175 - 310
Target Start/End: Complemental strand, 23534743 - 23534609
Alignment:
Q  175 atagtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagttt 274  Q
    ||||| ||||||||||| | ||| ||| |||| | ||||||||| | | ||||||||| |||||| || || ||||| ||||| ||| | || ||  |||    
T  23534743 atagttagatcactagaggtagaggaa-gacccaaaaaaattataacagaaactattaggaaagacttagagattaatgagttggactgtaatatgattt 23534645  T
Q  275 attattgaacattatgccgtaatttgatccatgtag 310  Q
    || || |||||||||| |||||||||||||||||||    
T  23534644 atgatagaacattatggcgtaatttgatccatgtag 23534609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 224 - 350
Target Start/End: Complemental strand, 45289216 - 45289090
Alignment:
Q  224 aaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagccaacaaaactta 323  Q
    ||||||||| ||||||||| || ||||| ||||| || | ||| || |||||| || |||||||||  | ||||||||||||||| ||||||   |||||    
T  45289216 aaactattaggaaagatttagagattaatgagttggatccaaatatggtttatgatagaacattatagcataatttgatccatgtcgccaaccccactta 45289117  T
Q  324 gtgggaaacgacttggatgttgatgta 350  Q
    |||||| | | ||||| ||||| ||||    
T  45289116 gtgggataaggcttggttgttgttgta 45289090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 233 - 312
Target Start/End: Original strand, 49888356 - 49888432
Alignment:
Q  233 agaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagcc 312  Q
    |||| |||||||||||||| ||||| ||| |||| || |||||| |   ||||||||| |||||||||||||||||||||    
T  49888356 agaatgattttgaaattaatgagttggactgaaatatggtttatga---aacattatgacgtaatttgatccatgtagcc 49888432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 182 - 315
Target Start/End: Original strand, 29475804 - 29475934
Alignment:
Q  182 gatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattg 281  Q
    |||||||||| ||||| ||| |||||||||||  |||  || ||||||||||||||||| | || ||||| ||||| ||  |||| || |||||| || |    
T  29475804 gatcactagaggcagaggaa-gacctagaaaagctat--aagaaactattaagaaagatctagagattaatgagttggattgaaatattgtttatgatag 29475900  T
Q  282 aacattatgccgtaatttgatccatgtagccaac 315  Q
    || | |||| |||||||||| |||| ||||||||    
T  29475901 aaaactatggcgtaatttgacccatctagccaac 29475934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 201 - 315
Target Start/End: Complemental strand, 39600829 - 39600715
Alignment:
Q  201 aagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttg 300  Q
    |||||||||||||| ||| | | ||||||||||||||||||| ||  |||| ||||| || | |||  | |||||  || ||||||||||  ||||||||    
T  39600829 aagacctagaaaaactataagagaaactattaagaaagatttagaggttaatgagttggatccaaatctggtttacgatagaacattatggtgtaatttg 39600730  T
Q  301 atccatgtagccaac 315  Q
    |||||| || |||||    
T  39600729 atccatctaaccaac 39600715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 201 - 310
Target Start/End: Original strand, 54128512 - 54128622
Alignment:
Q  201 aagacctagaaaaattatcaa-ataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaattt 299  Q
    |||||||||||||| ||| || | ||||||| | ||||||||| ||  | || ||||| |||| ||| || |||||| || |||||||||| | ||||||    
T  54128512 aagacctagaaaaactattaagagaaactataaggaaagatttagaggtcaatgagttggacccaaatatggtttatgatagaacattatggcataattt 54128611  T
Q  300 gatccatgtag 310  Q
    |||||||||||    
T  54128612 gatccatgtag 54128622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 30411111 - 30411070
Alignment:
Q  9 agcacagatgaagaggatgccttgttactcaaaccattcaaa 50  Q
    |||||||||||||||||||||||||| || |||||| |||||    
T  30411111 agcacagatgaagaggatgccttgttgcttaaaccactcaaa 30411070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 257
Target Start/End: Original strand, 37228192 - 37228272
Alignment:
Q  176 tagtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtt 257  Q
    |||||| ||||||||| ||||| |||||||||| |||||  || |   |||||||||||||||| || ||||||||||||||    
T  37228192 tagtcaaatcactagaggcaga-gaaagacctataaaaacgataagggaaactattaagaaagacttagaaattaacgagtt 37228272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 46148232 - 46148273
Alignment:
Q  271 gtttattattgaacattatgccgtaatttgatccatgtagcc 312  Q
    |||||| || |||||||||| |||||||||||||||||||||    
T  46148232 gtttatgatagaacattatggcgtaatttgatccatgtagcc 46148273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 285 - 350
Target Start/End: Complemental strand, 52882726 - 52882661
Alignment:
Q  285 attatgccgtaatttgatccatgtagccaacaaaacttagtgggaaacgacttggatgttgatgta 350  Q
    |||||| ||||||||||||||||||||||||   ||||||||||| | | ||||| ||||| ||||    
T  52882726 attatggcgtaatttgatccatgtagccaaccccacttagtgggagaaggcttggttgttgttgta 52882661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 137 - 349
Target Start/End: Original strand, 32931036 - 32931242
Alignment:
Q  137 gattccgtagtaaggagaatagatgagattgaagatatatagtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaa 236  Q
    ||||| |||||||||||| ||||| |||| || |    ||||||| ||||||||| ||||| | |||||||| ||||| ||||| | ||||||||| |||    
T  32931036 gattctgtagtaaggagactagatcagatggagg----atagtcatatcactagaggcaga-ggaagacctaaaaaaactatcagagaaactattaggaa 32931130  T
Q  237 agattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagccaacaaaacttagtgggaaacgact 336  Q
    ||||||||||||||| ||||| || ||||| || || ||| || |||||||||| | ||||||||||||||||||| ||   ||||||||||||| | ||    
T  32931131 agattttgaaattaatgagttgga-cgaaatatggtgtatgatagaacattatggcataatttgatccatgtagccgaccccacttagtgggaaaagcct 32931229  T
Q  337 tggatgttgatgt 349  Q
    ||| |||||||||    
T  32931230 tggttgttgatgt 32931242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 201 - 345
Target Start/End: Complemental strand, 35362798 - 35362654
Alignment:
Q  201 aagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttg 300  Q
    |||||||||||||| ||||  | ||||||||| ||||||||| |||||||| ||||| ||| |||| || || ||| || |||||||||| |||||||||    
T  35362798 aagacctagaaaaactatcggagaaactattaggaaagatttggaaattaatgagttggactgaaatatggtgtatgatagaacattatggcgtaatttg 35362699  T
Q  301 atccatgtagccaacaaaacttagtgggaaacgacttggatgttg 345  Q
    ||||||| |||||||   ||||||||||||| | ||||| |||||    
T  35362698 atccatgcagccaaccccacttagtgggaaaaggcttggttgttg 35362654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 224 - 312
Target Start/End: Original strand, 14459052 - 14459140
Alignment:
Q  224 aaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagcc 312  Q
    ||||||||| ||||||||| || ||||| ||||| |||| ||| || |||||| || ||||||||||  ||||||||||||||||||||    
T  14459052 aaactattaggaaagatttggagattaatgagttagaccaaaatatggtttatgatggaacattatggtgtaatttgatccatgtagcc 14459140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 175 - 311
Target Start/End: Complemental strand, 35914774 - 35914639
Alignment:
Q  175 atagtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagttt 274  Q
    ||||||||||| |||||  |||| ||| ||| |||||||| ||| | | ||||||||| |||||| ||  | ||||| ||||| |||| ||| || ||||    
T  35914774 atagtcagatccctagagacagaggaa-gacatagaaaaactataagagaaactattaggaaagacttgaagattaatgagttggaccaaaatatggttt 35914676  T
Q  275 attattgaacattatgccgtaatttgatccatgtagc 311  Q
    || || |||||||||| ||||||||||||||||||||    
T  35914675 atgatagaacattatggcgtaatttgatccatgtagc 35914639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 201 - 312
Target Start/End: Complemental strand, 17491802 - 17491691
Alignment:
Q  201 aagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttg 300  Q
    |||||||||||||| | | | | |||||||||||||||| || || ||||| ||||| |||| ||| || |||||| || |||||||||| ||||  |||    
T  17491802 aagacctagaaaaactgtaagagaaactattaagaaagacttggagattaatgagttggaccaaaatatggtttatgatagaacattatggcgtatgttg 17491703  T
Q  301 atccatgtagcc 312  Q
    ||||||||||||    
T  17491702 atccatgtagcc 17491691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 205 - 312
Target Start/End: Original strand, 29520787 - 29520894
Alignment:
Q  205 cctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatcc 304  Q
    |||||||||| ||| | | ||||| ||| ||| ||||| || ||||| ||||| || | ||| || |||||| || |||||||||| |||||||||||||    
T  29520787 cctagaaaaactataagagaaactgttaggaacgatttagagattaatgagttggatccaaatatggtttatgatagaacattatggcgtaatttgatcc 29520886  T
Q  305 atgtagcc 312  Q
    ||||||||    
T  29520887 atgtagcc 29520894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 175 - 329
Target Start/End: Complemental strand, 35643779 - 35643628
Alignment:
Q  175 atagtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagttt 274  Q
    |||||||||| |||||| ||||| ||| |||||||||||| ||| | | ||| ||||||||||||| | || ||||| ||||| || ||||| || ||||    
T  35643779 atagtcagattactagaggcagaggaa-gacctagaaaaactataagagaaattattaagaaagatctagagattaatgagttggatcgaaatatggttt 35643681  T
Q  275 attattgaacattatgccgtaatttgatccatgtagccaacaaaacttagtggga 329  Q
    || || |||||   |||| || |||||||||||||||| ||   |||||||||||    
T  35643680 atgatagaaca--ctgccatattttgatccatgtagcctaccccacttagtggga 35643628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 224 - 329
Target Start/End: Original strand, 490492 - 490597
Alignment:
Q  224 aaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagccaacaaaactta 323  Q
    ||||||| | ||||||||| || ||| | ||||| || | ||| || |||||| || |||||||||| ||||||||||||||||||||| ||   |||||    
T  490492 aaactataaggaaagatttagagattgatgagttggatccaaatatggtttatgatagaacattatggcgtaatttgatccatgtagccgaccccactta 490591  T
Q  324 gtggga 329  Q
    ||||||    
T  490592 gtggga 490597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 312
Target Start/End: Complemental strand, 39967643 - 39967536
Alignment:
Q  205 cctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatcc 304  Q
    |||||||||| ||| | | ||||||||||||||||| | |  ||||| ||||| ||  || | |||||||||  | |||||||||| |||| ||||||||    
T  39967643 cctagaaaaactataagagaaactattaagaaagatctagcgattaatgagttggattgagatatagtttatgttagaacattatggcgtagtttgatcc 39967544  T
Q  305 atgtagcc 312  Q
    ||||||||    
T  39967543 atgtagcc 39967536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 312
Target Start/End: Complemental strand, 43904777 - 43904702
Alignment:
Q  237 agattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagcc 312  Q
    |||||| || ||||| ||||| || | ||| || |||||| || |||||||||| |||||||||||||||||||||    
T  43904777 agatttagagattaatgagttggatctaaatatggtttatgatagaacattatggcgtaatttgatccatgtagcc 43904702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 352
Target Start/End: Original strand, 45419369 - 45419520
Alignment:
Q  201 aagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttg 300  Q
    |||||||||||||| ||| | | ||||||||| ||||| |||  |   ||| |||||||| | |||  | |||||| || ||||||||||  ||||||||    
T  45419369 aagacctagaaaaactataagagaaactattaggaaaggtttaaatcataatgagtttgatccaaatttggtttatgatagaacattatggtgtaatttg 45419468  T
Q  301 atccatgtagccaacaaaacttagtgggaaacgacttggatgttgatgtagt 352  Q
    |||||||||||| ||   ||||||||||| | | ||||| ||||| ||||||    
T  45419469 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgtagt 45419520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 207 - 309
Target Start/End: Complemental strand, 7615733 - 7615631
Alignment:
Q  207 tagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccat 306  Q
    |||||||||||| | | ||| |||||||||| ||||  ||||||| ||||| || ||||| ||||||||| ||  || ||||||  ||||||||||| ||    
T  7615733 tagaaaaattataagagaaaatattaagaaaaatttaaaaattaatgagttggatcgaaatatagtttatgataaaatattatgatgtaatttgatcgat 7615634  T
Q  307 gta 309  Q
    |||    
T  7615633 gta 7615631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 201 - 311
Target Start/End: Original strand, 14903695 - 14903805
Alignment:
Q  201 aagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttg 300  Q
    |||||||||||||| ||| | | | ||||||  |||| |||| |||| ||| ||||| |||| ||| |  |||||| || | |||||||| |||||||||    
T  14903695 aagacctagaaaaactataagagagactattgggaaatatttagaaagtaatgagttagaccaaaataaggtttatgataggacattatggcgtaatttg 14903794  T
Q  301 atccatgtagc 311  Q
    |||||||||||    
T  14903795 atccatgtagc 14903805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 309
Target Start/End: Original strand, 30559802 - 30559935
Alignment:
Q  175 atagtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagttt 274  Q
    |||||| ||||||||||   ||||||| ||| || ||||| ||| | | ||||||| | ||||||||| || ||||| ||||| || | | | || ||||    
T  30559802 atagtcggatcactagagatagatgaa-gacttaaaaaaactataagagaaactatcaggaaagatttagagattaatgagttggatccatatatggttt 30559900  T
Q  275 attattgaacattatgccgtaatttgatccatgta 309  Q
    || || |||||||||| ||||||||||||||||||    
T  30559901 atgatagaacattatgacgtaatttgatccatgta 30559935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 235 - 345
Target Start/End: Original strand, 44699634 - 44699744
Alignment:
Q  235 aaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagccaacaaaacttagtgggaaacga 334  Q
    |||||||| |||||||| ||||| |||||||| || ||  || || ||||| |||| ||||||||||||| ||||||  ||   ||||||||||||| |     
T  44699634 aaagatttggaaattaatgagttagaccgaaatatggtgcatgatagaacactatggcgtaatttgatccctgtagcagaccccacttagtgggaaaagg 44699733  T
Q  335 cttggatgttg 345  Q
    ||||| |||||    
T  44699734 cttggttgttg 44699744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 312
Target Start/End: Complemental strand, 30783215 - 30783079
Alignment:
Q  175 atagtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagttt 274  Q
    ||||||||||||||||| ||||| ||| || |||| ||||  || | | |||||||| |||||||| | || ||||| ||||| || ||||| |  ||||    
T  30783215 atagtcagatcactagaggcagaggaa-gatctagtaaaaccataagagaaactatttagaaagatctagagattaatgagttggatcgaaatacggttt 30783117  T
Q  275 attattgaacattatgccgtaatttgatccatgtagcc 312  Q
    || ||  |||||||||  ||| ||||||||||||||||    
T  30783116 ataataaaacattatgaggtagtttgatccatgtagcc 30783079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 178 - 312
Target Start/End: Original strand, 8364668 - 8364801
Alignment:
Q  178 gtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttatt 277  Q
    |||||||||||||| | ||||||| |||||| ||||| ||| | | ||||||||||||||||||| ||||||||  |||| ||| |||| || ||||||     
T  8364668 gtcagatcactagaggaagatgaa-gacctaaaaaaactataagagaaactattaagaaagatttagaaattaataagttggactgaaacatggtttatg 8364766  T
Q  278 attgaacattatgccgtaatttgatccatgtagcc 312  Q
    || |||||||||| |||||||||||||||||||||    
T  8364767 atagaacattatggcgtaatttgatccatgtagcc 8364801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 181 - 345
Target Start/End: Complemental strand, 34672 - 34509
Alignment:
Q  181 agatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattatt 280  Q
    ||||||||||| ||||| ||| |||||||||||| ||| | | |||| |||||||||||| |  | ||||| ||||| ||  |||| || |||||| ||     
T  34672 agatcactagaggcagaggaa-gacctagaaaaactataagagaaaccattaagaaagatctaaagattaatgagttggattgaaatatggtttatgata 34574  T
Q  281 gaacattatgccgtaatttgatccatgtagccaacaaaacttagtgggaaacgacttggatgttg 345  Q
    |||||||||| ||||||||||||||||||||  ||   ||||||||||| | ||||||| |||||    
T  34573 gaacattatggcgtaatttgatccatgtagctgaccccacttagtgggataagacttggttgttg 34509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 201 - 312
Target Start/End: Original strand, 31818665 - 31818776
Alignment:
Q  201 aagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttg 300  Q
    |||||||||||||| ||| | | ||||||||| ||||| ||| || ||||| ||||| || | ||  || |||||| || |||||||||| |||||||||    
T  31818665 aagacctagaaaaactataagagaaactattaggaaaggtttggagattaatgagttggatcaaagtatggtttatgatagaacattatgtcgtaatttg 31818764  T
Q  301 atccatgtagcc 312  Q
    ||||||||||||    
T  31818765 atccatgtagcc 31818776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 311
Target Start/End: Complemental strand, 9593856 - 9593748
Alignment:
Q  201 aagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttg 300  Q
    |||||||||||||||||| | | ||||||||| |||||| || || ||||| ||||| || |  || || |||||| || ||||||||||  ||||||||    
T  9593856 aagacctagaaaaattataagagaaactattaggaaagacttagagattaatgagttggatcccaatatggtttatgatagaacattatg--gtaatttg 9593759  T
Q  301 atccatgtagc 311  Q
    |||||| ||||    
T  9593758 atccatatagc 9593748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 345
Target Start/End: Complemental strand, 12134074 - 12133906
Alignment:
Q  175 atagtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagttt 274  Q
    ||||||||||||||||| ||| | ||| |||||| ||||| ||| | ||||| ||||| ||||| ||| |||||||| ||||| || |||||  |  ||     
T  12134074 atagtcagatcactagaggcataggaa-gacctacaaaaactataatataaaatattaggaaag-tttagaaattaatgagttggatcgaaatgtgattc 12133977  T
Q  275 attattgaacattatgccgtaatttgatccatgtagccaacaaaacttagtgggaaacgacttggatgttg 345  Q
    || || |||||||||| | |||| |||||||||||||| ||   |||||||| |||| | ||||| |||||    
T  12133976 ataatagaacattatggcataatctgatccatgtagccgaccccacttagtgagaaaaggcttggttgttg 12133906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 175 - 314
Target Start/End: Complemental strand, 26742069 - 26741929
Alignment:
Q  175 atagtcagatcactagaagcagatgaaagacctagaaaaattatcaaa--taaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagt 272  Q
    ||||||||||||||||| ||||| ||| ||| |||||||| |||||||  |||||||||| |||| |||| ||||| || ||||| |||||||| || ||    
T  26742069 atagtcagatcactagaggcagaggaa-gacgtagaaaaactatcaaagataaactattaggaaatatttggaaataaatgagttggaccgaaatatggt 26741971  T
Q  273 ttattattgaacattatgccgtaatttgatccatgtagccaa 314  Q
    |||| || |||||||||| |||||||||||| ||||| ||||    
T  26741970 ttatgatagaacattatggcgtaatttgatcaatgtaaccaa 26741929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 175 - 311
Target Start/End: Complemental strand, 38135386 - 38135251
Alignment:
Q  175 atagtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagttt 274  Q
    |||||||||||| |||| ||||||||| |||||||||||| ||| | | |||||||||| |||||||| || ||||| ||||| |||||||| || | ||    
T  38135386 atagtcagatcattagaggcagatgaa-gacctagaaaaagtataagagaaactattaaaaaagatttagagattaatgagttggaccgaaatatgggtt 38135288  T
Q  275 attattgaacattatgccgtaatttgatccatgtagc 311  Q
    || || ||| |||||| ||||||||||||||| ||||    
T  38135287 atgatagaatattatggcgtaatttgatccatctagc 38135251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 203 - 315
Target Start/End: Complemental strand, 44401271 - 44401161
Alignment:
Q  203 gacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgat 302  Q
    |||||||||||||||| | | ||||||||||||||||||| || |||||||||||  | | ||| ||  ||||| || |||||||||| |||||||||||    
T  44401271 gacctagaaaaattataagagaaactattaagaaagatttagagattaacgagtt--atcaaaatatgttttatgatagaacattatgacgtaatttgat 44401174  T
Q  303 ccatgtagccaac 315  Q
    |||||||||||||    
T  44401173 ccatgtagccaac 44401161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 178 - 312
Target Start/End: Complemental strand, 47796322 - 47796189
Alignment:
Q  178 gtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttatt 277  Q
    |||||||||||||  ||||||||| |||| ||||||||||| | | || |||||| ||||||||| ||||||||  |||| ||| |||| || ||||||     
T  47796322 gtcagatcactaggggcagatgaa-gaccgagaaaaattataagagaacctattaggaaagatttagaaattaataagttggactgaaatatggtttatg 47796224  T
Q  278 attgaacattatgccgtaatttgatccatgtagcc 312  Q
    || ||| |||||| |||||||||||||||| ||||    
T  47796223 atagaatattatggcgtaatttgatccatgcagcc 47796189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 201 - 329
Target Start/End: Complemental strand, 28628081 - 28627953
Alignment:
Q  201 aagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttg 300  Q
    |||||||||||||| ||| | | ||||||||| ||||||||| || ||||| ||||| ||   |||  | |||||| || |||||||||| |||||||||    
T  28628081 aagacctagaaaaactataagagaaactattaggaaagatttagagattaatgagttggatgcaaatgtggtttatgatagaacattatggcgtaatttg 28627982  T
Q  301 atccatgtagccaacaaaacttagtggga 329  Q
    |||||||||||| ||   |||||||||||    
T  28627981 atccatgtagccgactccacttagtggga 28627953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 207 - 312
Target Start/End: Complemental strand, 36239938 - 36239833
Alignment:
Q  207 tagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccat 306  Q
    |||||||| ||| | | ||||||||| |||| |||| || ||||||||||| || | ||| ||  ||||| || |||||||||| |||||||||||||||    
T  36239938 tagaaaaactataagagaaactattaggaaaaatttagagattaacgagttggatccaaatatgctttatgatagaacattatggcgtaatttgatccat 36239839  T
Q  307 gtagcc 312  Q
    ||||||    
T  36239838 gtagcc 36239833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 312
Target Start/End: Complemental strand, 27893688 - 27893600
Alignment:
Q  224 aaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagcc 312  Q
    ||||||||||||||||||| || ||||| ||| | |||||||| ||  ||||| || |||||||||| | ||||||||| |||||||||    
T  27893688 aaactattaagaaagatttagagattaatgagctggaccgaaatatgttttatgatagaacattatggcataatttgattcatgtagcc 27893600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 303
Target Start/End: Complemental strand, 2882863 - 2882782
Alignment:
Q  222 ataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatc 303  Q
    ||||||||||| ||||  ||| |||||||| ||||| || ||||| || |||||| || |||||||||| ||||||||||||    
T  2882863 ataaactattaggaaacctttggaaattaatgagttggatcgaaacatggtttatgatagaacattatggcgtaatttgatc 2882782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 271 - 339
Target Start/End: Original strand, 4604751 - 4604819
Alignment:
Q  271 gtttattattgaacattatgccgtaatttgatccatgtagccaacaaaacttagtgggaaacgacttgg 339  Q
    |||||| || |||||||||| |||| |||||||||||||||||||   ||||||||||| | |||||||    
T  4604751 gtttatgatagaacattatggcgtactttgatccatgtagccaaccccacttagtgggataagacttgg 4604819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 272 - 327
Target Start/End: Original strand, 44951360 - 44951415
Alignment:
Q  272 tttattattgaacattatgccgtaatttgatccatgtagccaacaaaacttagtgg 327  Q
    ||||| || ||||| |||| ||||||||||||||||||||| |||| |||||||||    
T  44951360 tttatgatagaacactatgacgtaatttgatccatgtagccgacaatacttagtgg 44951415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 281 - 315
Target Start/End: Complemental strand, 34029744 - 34029710
Alignment:
Q  281 gaacattatgccgtaatttgatccatgtagccaac 315  Q
    |||||||||| ||||||||||||||||||||||||    
T  34029744 gaacattatggcgtaatttgatccatgtagccaac 34029710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 228 - 310
Target Start/End: Complemental strand, 36101898 - 36101816
Alignment:
Q  228 tattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtag 310  Q
    ||||| |||||||||  | ||||| ||||| || | ||| || |||||| || |||||||||| |||||||||||||||||||    
T  36101898 tattatgaaagatttatagattaatgagttggatcaaaatatggtttatgatagaacattatgacgtaatttgatccatgtag 36101816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 201 - 315
Target Start/End: Original strand, 37976369 - 37976483
Alignment:
Q  201 aagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttg 300  Q
    |||||||||||||| ||| |   |||||| || ||||||||| || ||||| ||||| || | ||| || |||||| || |||||||||| |  |||| |    
T  37976369 aagacctagaaaaactataagtgaaactaatatgaaagatttagagattaatgagttggatccaaatatggtttatgatagaacattatggctaaattag 37976468  T
Q  301 atccatgtagccaac 315  Q
    |||||||||||||||    
T  37976469 atccatgtagccaac 37976483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 224 - 306
Target Start/End: Complemental strand, 40391948 - 40391866
Alignment:
Q  224 aaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccat 306  Q
    |||||| || ||| ||||| ||||||||  |||| |||||||| || | |||| || |||||||||| |||||||||||||||    
T  40391948 aaactagtaggaatgatttagaaattaataagttggaccgaaatatggcttatgatagaacattatggcgtaatttgatccat 40391866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 201 - 311
Target Start/End: Original strand, 45601610 - 45601720
Alignment:
Q  201 aagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttg 300  Q
    |||||||||||||| ||| | | |||| |||||||||||| | || ||||| ||||| || | ||| ||  ||||| || ||||| ||||  ||||||||    
T  45601610 aagacctagaaaaactataagagaaaccattaagaaagatctagagattaatgagttggatcaaaatatgatttatgatagaacactatggtgtaatttg 45601709  T
Q  301 atccatgtagc 311  Q
    |||||||||||    
T  45601710 atccatgtagc 45601720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 310
Target Start/End: Original strand, 1569174 - 1569259
Alignment:
Q  225 aactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtag 310  Q
    |||||||||||||||| | || ||||| ||||| || | ||| || |||||| || |||||||| | |||||||||||| ||||||    
T  1569174 aactattaagaaagatctagagattaatgagttggatcaaaatatggtttatgatagaacattacggcgtaatttgatcgatgtag 1569259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 24376101 - 24376060
Alignment:
Q  271 gtttattattgaacattatgccgtaatttgatccatgtagcc 312  Q
    |||||| || |||||||||| |||||||||||||||||||||    
T  24376101 gtttatgatggaacattatggcgtaatttgatccatgtagcc 24376060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 30814844 - 30814780
Alignment:
Q  175 atagtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagat 240  Q
    ||||||||||||||||| ||||| ||| |||||||||| | ||| | | |||||||||||||||||    
T  30814844 atagtcagatcactagaggcagaggaa-gacctagaaacactataagagaaactattaagaaagat 30814780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 350
Target Start/End: Complemental strand, 40980076 - 40979927
Alignment:
Q  201 aagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttg 300  Q
    ||||||||| |||| ||| | | |||||||||  |||||||| ||  | || ||||| || | ||| || |||||| || ||||| |||| |||||||||    
T  40980076 aagacctaggaaaactataagagaaactattagaaaagatttagaggtcaatgagttggatccaaatatggtttatgatagaacactatggcgtaatttg 40979977  T
Q  301 atccatgtagccaacaaaacttagtgggaaacgacttggatgttgatgta 350  Q
    |||||||||||| ||   ||||||||||| | | ||||| ||||| ||||    
T  40979976 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgta 40979927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 5e-21; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 201 - 345
Target Start/End: Original strand, 33287555 - 33287699
Alignment:
Q  201 aagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttg 300  Q
    |||||||||||||| ||| | | ||||||||||||||||| | |||||||| ||||| || ||||| || |||||| || |||||||||| | || ||||    
T  33287555 aagacctagaaaaactataagagaaactattaagaaagatctagaaattaatgagttagatcgaaatatggtttatgatagaacattatgacatagtttg 33287654  T
Q  301 atccatgtagccaacaaaacttagtgggaaacgacttggatgttg 345  Q
    |||| ||||||||||   ||||||||||| | ||||||| |||||    
T  33287655 atccttgtagccaactccacttagtgggacaagacttggttgttg 33287699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 202 - 314
Target Start/End: Complemental strand, 19337041 - 19336928
Alignment:
Q  202 agacctagaaaaattatcaa-ataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttg 300  Q
    ||||||||||||| |||||  | ||||||| ||||||||||| || ||||| ||||| || ||||| || |||||| || |||||||||| |||||||||    
T  19337041 agacctagaaaaactatcactagaaactataaagaaagatttagagattaatgagttggatcgaaatatggtttatgatagaacattatggcgtaatttg 19336942  T
Q  301 atccatgtagccaa 314  Q
    ||||||||||||||    
T  19336941 atccatgtagccaa 19336928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 175 - 312
Target Start/End: Original strand, 38435061 - 38435197
Alignment:
Q  175 atagtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagttt 274  Q
    ||||||||||||||||| ||||| | | |||||||||||| ||  | | ||||||||||||||||| | || ||||| | ||| || |||||  | ||||    
T  38435061 atagtcagatcactagaggcagaggta-gacctagaaaaactacaagagaaactattaagaaagatctagagattaatgtgttggatcgaaatttggttt 38435159  T
Q  275 attattgaacattatgccgtaatttgatccatgtagcc 312  Q
    || ||||||||||||| |||||||||||||||||||||    
T  38435160 atgattgaacattatggcgtaatttgatccatgtagcc 38435197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 177 - 311
Target Start/End: Original strand, 3481264 - 3481398
Alignment:
Q  177 agtcagatcactagaagcagatgaaagacctagaaaaatta-tcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagttta 275  Q
    ||||||||||||||| | ||| ||| ||||||||||||  | ||| | ||||||||| ||||||||| ||||||||| |||| ||| |||| || || ||    
T  3481264 agtcagatcactagaggaagaggaa-gacctagaaaaaaaaatcagagaaactattaggaaagatttggaaattaacaagttggacagaaatatggtcta 3481362  T
Q  276 ttattgaacattatgccgtaatttgatccatgtagc 311  Q
    | || |||||||||| ||||||||||||||||||||    
T  3481363 tgatagaacattatggcgtaatttgatccatgtagc 3481398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 201 - 308
Target Start/End: Complemental strand, 43752095 - 43751988
Alignment:
Q  201 aagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttg 300  Q
    |||||||||||||| ||||| | ||||||||| ||||||||| |||||||| ||||| |||||||| || || ||| || ||||| ||||  ||||||||    
T  43752095 aagacctagaaaaactatcagagaaactattaggaaagatttggaaattaatgagttggaccgaaagatggtgtatgatagaacactatgttgtaatttg 43751996  T
Q  301 atccatgt 308  Q
    ||||||||    
T  43751995 atccatgt 43751988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 224 - 355
Target Start/End: Original strand, 9496023 - 9496154
Alignment:
Q  224 aaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagccaacaaaactta 323  Q
    |||||||| |||||||||| ||  |||| ||||| || | ||| || |||||| || |||||||||| ||||||||||||||||||||||||   |||||    
T  9496023 aaactattcagaaagatttagaggttaatgagttggatccaaatatggtttatgatagaacattatggcgtaatttgatccatgtagccaaccccactta 9496122  T
Q  324 gtgggaaacgacttggatgttgatgtagtatt 355  Q
    |||||| | | ||||| ||||| ||| |||||    
T  9496123 gtgggacaaggcttggttgttgttgttgtatt 9496154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 201 - 339
Target Start/End: Original strand, 26670902 - 26671040
Alignment:
Q  201 aagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttg 300  Q
    |||||||| ||||| ||| ||| ||||||||||||||||||| || ||||| ||||| |||| ||| ||  ||||| || ||| || |||  ||||||||    
T  26670902 aagacctacaaaaactataaaagaaactattaagaaagatttagagattaatgagttggaccaaaatatgatttatgatagaatataatggtgtaatttg 26671001  T
Q  301 atccatgtagccaacaaaacttagtgggaaacgacttgg 339  Q
    |||||||||||| |||   |||||||||| | |||||||    
T  26671002 atccatgtagccgacactgcttagtgggataagacttgg 26671040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 176 - 346
Target Start/End: Original strand, 33504333 - 33504503
Alignment:
Q  176 tagtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttga-aattaacgagtttgaccgaaaaatagttt 274  Q
    |||||||||||||||| ||||| |||| ||||||||||| ||| | | ||||||||||||||||| | || | ||||  |||| ||  |||| || || |    
T  33504333 tagtcagatcactagaggcaga-gaaaaacctagaaaaactataagagaaactattaagaaagatctagagatttaataagttggattgaaatatggtat 33504431  T
Q  275 attattgaacattatgccgtaatttgatccatgtagccaacaaaacttagtgggaaacgacttggatgttga 346  Q
    || || |||||||||| ||||||||||||||| ||||| ||   ||||||||||| | | ||||| ||||||    
T  33504432 atgatagaacattatggcgtaatttgatccatctagccgaccccacttagtgggataaggcttggttgttga 33504503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 229 - 315
Target Start/End: Original strand, 6219127 - 6219213
Alignment:
Q  229 attaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagccaac 315  Q
    |||| ||||||||| || ||||  ||||| |||||||| || |||||| || ||||||||||  |||||||||||||||||||||||    
T  6219127 attaggaaagatttagagattagtgagttggaccgaaatatggtttatgatagaacattatggtgtaatttgatccatgtagccaac 6219213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 242 - 315
Target Start/End: Original strand, 36366811 - 36366884
Alignment:
Q  242 ttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagccaac 315  Q
    |||||||||| ||||| |||||||| || |||||| || ||||||||||  ||||||||||||||||| |||||    
T  36366811 ttgaaattaatgagttggaccgaaatatggtttataatagaacattatggtgtaatttgatccatgtatccaac 36366884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 314
Target Start/End: Complemental strand, 26784512 - 26784375
Alignment:
Q  176 tagtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagttta 275  Q
    |||||| ||||||||| ||||| |||||||||||||||| ||| | | ||||||||||||||||| | || ||||| |||||  |  |||| || || ||    
T  26784512 tagtcaaatcactagaggcaga-gaaagacctagaaaaactataagagaaactattaagaaagatatagagattaatgagttgaatagaaatatggtata 26784414  T
Q  276 ttattgaacattatgccgtaatttgatccatgtagccaa 314  Q
    | ||  |||||| ||   |||||||||||||||||||||    
T  26784413 tgataaaacattttggtttaatttgatccatgtagccaa 26784375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 224 - 309
Target Start/End: Original strand, 45077884 - 45077971
Alignment:
Q  224 aaactattaagaaagattttgaaattaacgag--tttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgta 309  Q
    ||||||||||||||||||| || ||||| |||  || || ||||| ||||||||| || |||||| ||| | ||||||||||||||||    
T  45077884 aaactattaagaaagatttagagattaatgagagttggatcgaaatatagtttatgatagaacataatggcataatttgatccatgta 45077971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 262 - 329
Target Start/End: Complemental strand, 3720502 - 3720435
Alignment:
Q  262 cgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagccaacaaaacttagtggga 329  Q
    |||||||| |||||| || ||||||||||  |||||||||||||||||||| ||   |||||||||||    
T  3720502 cgaaaaatggtttatgatagaacattatggtgtaatttgatccatgtagccgaccccacttagtggga 3720435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 290
Target Start/End: Complemental strand, 37452399 - 37452285
Alignment:
Q  175 atagtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagttt 274  Q
    ||||||||||||| ||| | ||| ||| |||||||||||||||| | |  | ||||||||||||| || || ||||| ||||| ||| |||| || ||||    
T  37452399 atagtcagatcacaagaggaagaggaa-gacctagaaaaattataagaggagctattaagaaagaattagagattaatgagttggacagaaatatggttt 37452301  T
Q  275 attattgaacattatg 290  Q
    || || ||||||||||    
T  37452300 atgatagaacattatg 37452285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 329
Target Start/End: Complemental strand, 9531678 - 9531620
Alignment:
Q  271 gtttattattgaacattatgccgtaatttgatccatgtagccaacaaaacttagtggga 329  Q
    |||||| || |||||||||| ||||||||||||||||||||| ||   |||||||||||    
T  9531678 gtttatgatggaacattatggcgtaatttgatccatgtagccgaccccacttagtggga 9531620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 275 - 329
Target Start/End: Original strand, 25384677 - 25384731
Alignment:
Q  275 attattgaacattatgccgtaatttgatccatgtagccaacaaaacttagtggga 329  Q
    ||||| ||||| |||| ||||||||||||||||||||||||   |||||||||||    
T  25384677 attatagaacactatggcgtaatttgatccatgtagccaacctcacttagtggga 25384731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 329
Target Start/End: Complemental strand, 39709279 - 39709221
Alignment:
Q  271 gtttattattgaacattatgccgtaatttgatccatgtagccaacaaaacttagtggga 329  Q
    |||||| |||||||| |||| ||||||||||||||||||||| ||   |||||||||||    
T  39709279 gtttatgattgaacactatggcgtaatttgatccatgtagccgaccccacttagtggga 39709221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 178 - 329
Target Start/End: Complemental strand, 13805435 - 13805285
Alignment:
Q  178 gtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttatt 277  Q
    |||||||||||||| ||||| |||| ||||||||||| ||| | | ||||||| |||||||||||||| | |||  |||| ||| |||| || ||||||     
T  13805435 gtcagatcactagaggcagaggaaa-acctagaaaaactataagagaaactatgaagaaagattttgagagtaataagttggacggaaatatggtttatg 13805337  T
Q  278 attgaacattatgccgtaatttgatccatgtagccaacaaaacttagtggga 329  Q
    || ||||||||||   ||||||||||||||||||||||   |||||||||||    
T  13805336 atagaacattatgggataatttgatccatgtagccaaccccacttagtggga 13805285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 177 - 344
Target Start/End: Original strand, 53540401 - 53540567
Alignment:
Q  177 agtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttat 276  Q
    ||||||||||||||| ||||| ||| |||||||||||| ||| | ||||||||||| |||||| || || ||||| ||||| |||  ||| || ||||||    
T  53540401 agtcagatcactagaggcagaggaa-gacctagaaaaactataagataaactattaggaaagacttggagattaatgagttggacaaaaatatggtttat 53540499  T
Q  277 tattgaacattatgccgtaatttgatccatgtagccaacaaaacttagtgggaaacgacttggatgtt 344  Q
     || |||||||||| | ||||||||||||| ||||||||   ||| ||||||| | ||||||| ||||    
T  53540500 gatagaacattatggcataatttgatccatatagccaaccccactgagtgggataagacttggttgtt 53540567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 137 - 315
Target Start/End: Complemental strand, 21945845 - 21945675
Alignment:
Q  137 gattccgtagtaaggagaatagatgagattgaagatatatagtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaa 236  Q
    ||||| |||||||||||| ||||| |||| || |    ||||||| ||||||||| || || | |||||||||||||| ||||| | ||||||||| |||    
T  21945845 gattctgtagtaaggagagtagatcagatggagg----atagtcacatcactagaggctga-ggaagacctagaaaaactatcatagaaactattaggaa 21945751  T
Q  237 agattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagccaac 315  Q
    |||||| |||||||| ||||| ||| |||| || |||||| || ||||   ||| |||| |||||||||||||||||||    
T  21945750 agatttggaaattaatgagttggactgaaatatggtttatgatagaac---atggcgtattttgatccatgtagccaac 21945675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 228 - 329
Target Start/End: Original strand, 55007907 - 55008008
Alignment:
Q  228 tattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagccaacaaaacttagtgg 327  Q
    ||||||||||||||| || ||||| ||||| |||||||| || |||||| || || ||||||| ||||||||||||||||||||| ||   |||||||||    
T  55007907 tattaagaaagatttagagattaatgagttggaccgaaatatggtttatgatagatcattatgacgtaatttgatccatgtagccgaccccacttagtgg 55008006  T
Q  328 ga 329  Q
    ||    
T  55008007 ga 55008008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 202 - 329
Target Start/End: Original strand, 37488226 - 37488353
Alignment:
Q  202 agacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttga 301  Q
    ||||||||||||| ||| | | ||||||||||||||||| | ||||||||  ||||||| | ||| || ||| || || || ||||||| ||||||||||    
T  37488226 agacctagaaaaactataagagaaactattaagaaagatctagaaattaataagtttgatcaaaatatggttaatgatagagcattatggcgtaatttga 37488325  T
Q  302 tccatgtagccaacaaaacttagtggga 329  Q
    |||||||||||| |   |||||||||||    
T  37488326 tccatgtagccagccccacttagtggga 37488353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 207 - 314
Target Start/End: Original strand, 51421870 - 51421977
Alignment:
Q  207 tagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccat 306  Q
    |||||||| ||| | | ||||||||| ||||||||| ||  |||| || || || | |||||| |||||| || |||||||||| |||||||||||||||    
T  51421870 tagaaaaactataagagaaactattaggaaagatttagaggttaatgaattggatccaaaaatggtttatgatagaacattatgacgtaatttgatccat 51421969  T
Q  307 gtagccaa 314  Q
    ||||||||    
T  51421970 gtagccaa 51421977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 339
Target Start/End: Original strand, 35690405 - 35690543
Alignment:
Q  201 aagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttg 300  Q
    |||||||||||||| ||| | | ||||||||| |||| |||| ||  |||| |||||||| | ||  |  |||||| || |||||||||| |||||||||    
T  35690405 aagacctagaaaaactataagagaaactattacgaaaaatttagaggttaatgagtttgatccaatcagggtttatgatagaacattatggcgtaatttg 35690504  T
Q  301 atccatgtagccaacaaaacttagtgggaaacgacttgg 339  Q
    |||||||||||| ||   ||||||||||| | |||||||    
T  35690505 atccatgtagccgaccccacttagtgggataagacttgg 35690543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 240 - 345
Target Start/End: Original strand, 29398977 - 29399082
Alignment:
Q  240 ttttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagccaacaaaacttagtgggaaacgacttgg 339  Q
    |||||||||||||||||| || ||||| |  |||||| || |||||||||| ||||||||||| ||||||||  ||   ||||||||||||| | |||||    
T  29398977 ttttgaaattaacgagttggaacgaaataaggtttatgatagaacattatggcgtaatttgattcatgtagctgaccccacttagtgggaaaaggcttgg 29399076  T
Q  340 atgttg 345  Q
     |||||    
T  29399077 ttgttg 29399082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 224 - 309
Target Start/End: Complemental strand, 30621326 - 30621241
Alignment:
Q  224 aaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgta 309  Q
    ||||||||||||||||||| || ||||| | ||| |||||||| || |||||| || |||||||||| | ||| ||||||||||||    
T  30621326 aaactattaagaaagatttagagattaatgtgttggaccgaaatatggtttatgatagaacattatggcttaacttgatccatgta 30621241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 203 - 311
Target Start/End: Complemental strand, 33225979 - 33225873
Alignment:
Q  203 gacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgat 302  Q
    |||||||||||||||| | | ||||||||||||||||||| || |||||||||||  | | ||| ||  ||||| || |||||||||| ||| |||||||    
T  33225979 gacctagaaaaattataagagaaactattaagaaagatttagagattaacgagtt--atcaaaatatgttttatgatagaacattatgacgtgatttgat 33225882  T
Q  303 ccatgtagc 311  Q
    | |||||||    
T  33225881 caatgtagc 33225873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 312
Target Start/End: Complemental strand, 34233225 - 34233061
Alignment:
Q  143 gtagtaaggagaatagatgagattgaagatatatagtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattt 242  Q
    |||||||||||| |||||||||| || |||     |||||||||||||| ||||| |||| ||||||||||| ||||| | |||||||| | |||||  |    
T  34233225 gtagtaaggagagtagatgagatggaggatc----gtcagatcactagaggcagaggaaa-acctagaaaaactatcagagaaactattcataaagacct 34233131  T
Q  243 tgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagcc 312  Q
     || ||||| ||||| || | ||| |  |||||| || ||||||| |  |||||||||||||||||||||    
T  34233130 agagattaatgagttagatcaaaataaggtttatgatagaacattgtagcgtaatttgatccatgtagcc 34233061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 314
Target Start/End: Complemental strand, 20105690 - 20105553
Alignment:
Q  176 tagtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagttta 275  Q
    |||||||||||||||| ||||||| | || | ||||||| ||| ||| |||| | |||||||||| | || ||| | ||||| ||| |||| || || ||    
T  20105690 tagtcagatcactagaggcagatgta-gatccagaaaaactataaaagaaacgactaagaaagatctagagattgatgagttggactgaaatatggtata 20105592  T
Q  276 ttattgaacattatgccgtaatttgatccatgtagccaa 314  Q
    | || | |||||||| ||| |||||||||||||||||||    
T  20105591 tgataggacattatggcgtcatttgatccatgtagccaa 20105553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 311
Target Start/End: Original strand, 25574982 - 25575068
Alignment:
Q  225 aactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagc 311  Q
    |||||||||||||||| | || ||||| ||||| || ||||| || |||||| || ||||||| ||  |||||||||||||||||||    
T  25574982 aactattaagaaagatctagagattaatgagttggatcgaaatatggtttatgatagaacattgtggtgtaatttgatccatgtagc 25575068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 3979120 - 3979165
Alignment:
Q  267 aatagtttattattgaacattatgccgtaatttgatccatgtagcc 312  Q
    |||||||||| || |||||||||| |||||||||||||||||||||    
T  3979120 aatagtttatgatagaacattatgacgtaatttgatccatgtagcc 3979165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 224 - 329
Target Start/End: Complemental strand, 26024975 - 26024870
Alignment:
Q  224 aaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagccaacaaaactta 323  Q
    ||||||||||||||||| | || ||||| ||||| || ||| | || |||||| || ||||||||||  ||||||| |||||||||||| ||   |||||    
T  26024975 aaactattaagaaagatctagagattaatgagttggatcgagacatggtttatgatagaacattatggtgtaattttatccatgtagccgacctcactta 26024876  T
Q  324 gtggga 329  Q
    ||||||    
T  26024875 gtggga 26024870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 224 - 315
Target Start/End: Complemental strand, 2557797 - 2557705
Alignment:
Q  224 aaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattat-gccgtaatttgatccatgtagccaac 315  Q
    ||||||||||||| ||| |  | ||||||||||| || ||||| || |||||| || ||||||||| |  |||||||||||||||||||||||    
T  2557797 aaactattaagaaggatctgaagattaacgagttggatcgaaatatggtttatgatagaacattattggtgtaatttgatccatgtagccaac 2557705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 201 - 329
Target Start/End: Complemental strand, 45204987 - 45204860
Alignment:
Q  201 aagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttg 300  Q
    |||||||||||||| ||| | | ||||||||| ||||||||| ||  ||||  |||| || | ||| || |||||| || |||||||| || ||||||||    
T  45204987 aagacctagaaaaactataagagaaactattaggaaagatttagagtttaataagttggatccaaatatggtttatgatagaacattaggc-gtaatttg 45204889  T
Q  301 atccatgtagccaacaaaacttagtggga 329  Q
    ||| |||||||| ||  ||||||||||||    
T  45204888 atctatgtagcccacccaacttagtggga 45204860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 311
Target Start/End: Original strand, 51438562 - 51438689
Alignment:
Q  175 atagtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagttt 274  Q
    ||||| ||||||||||| ||| || ||||||||||||||| |||  || |||||||||||||||        ||||| ||||| ||  |||| || ||||    
T  51438562 atagttagatcactagaggca-attaaagacctagaaaaactatagaagaaactattaagaaag--------attaatgagttggaatgaaatatggttt 51438652  T
Q  275 attattgaacattatgccgtaatttgatccatgtagc 311  Q
    || ||  ||||||||| ||||||||||||||||||||    
T  51438653 ataatataacattatggcgtaatttgatccatgtagc 51438689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 329
Target Start/End: Original strand, 4548226 - 4548284
Alignment:
Q  271 gtttattattgaacattatgccgtaatttgatccatgtagccaacaaaacttagtggga 329  Q
    |||||| || ||||| || | ||||||||||||||||||||||||  ||||||||||||    
T  4548226 gtttatgatagaacactaaggcgtaatttgatccatgtagccaacccaacttagtggga 4548284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 312
Target Start/End: Original strand, 28351691 - 28351804
Alignment:
Q  199 gaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatt 298  Q
    |||||||||||||||| ||| | | ||||||||| ||||||||| || ||||  ||||| || | ||| |||||||||  | |||| |||||   | |||    
T  28351691 gaaagacctagaaaaactataagagaaactattacgaaagatttagagattattgagttggatccaaatatagtttatagtagaaccttatggaattatt 28351790  T
Q  299 tgatccatgtagcc 312  Q
    ||||||||||||||    
T  28351791 tgatccatgtagcc 28351804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 257
Target Start/End: Original strand, 47147483 - 47147563
Alignment:
Q  176 tagtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtt 257  Q
    ||||| |||||||||| ||||| ||| |||||||||||| |||  || ||||||||||||||||| | || ||||| |||||    
T  47147483 tagtcggatcactagaggcagaggaa-gacctagaaaaactatagaagaaactattaagaaagatctagagattaatgagtt 47147563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 227 - 308
Target Start/End: Complemental strand, 55388333 - 55388252
Alignment:
Q  227 ctattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgt 308  Q
    |||||||||||||||| || ||||| ||||| || ||||| ||  ||||| || ||||||| ||  ||||||||||||||||    
T  55388333 ctattaagaaagatttggagattaatgagttagatcgaaatatgatttatgatagaacattgtggtgtaatttgatccatgt 55388252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 8e-20; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 178 - 312
Target Start/End: Original strand, 6788179 - 6788312
Alignment:
Q  178 gtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttatt 277  Q
    |||||||||||||| ||||| ||| |||||||||||| |||||||  |||||||| |||||| || |||||||| ||||| ||| |||| ||  |||||     
T  6788179 gtcagatcactagaggcagaggaa-gacctagaaaaactatcaaaggaactattaggaaagacttggaaattaatgagttggactgaaatatgatttatg 6788277  T
Q  278 attgaacattatgccgtaatttgatccatgtagcc 312  Q
    || |||||||||  ||||||||||| |||||||||    
T  6788278 atagaacattatagcgtaatttgattcatgtagcc 6788312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 201 - 315
Target Start/End: Original strand, 29922418 - 29922532
Alignment:
Q  201 aagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttg 300  Q
    |||| ||||||||| ||| | | ||||||||||||||||||| || |||||| |||| ||| ||||  | |||||  || |||||||||| |||||||||    
T  29922418 aagatctagaaaaactataagagaaactattaagaaagatttagagattaacaagttggactgaaacctggtttacgatagaacattatggcgtaatttg 29922517  T
Q  301 atccatgtagccaac 315  Q
    |||||||||||||||    
T  29922518 atccatgtagccaac 29922532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 179 - 312
Target Start/End: Original strand, 9235162 - 9235292
Alignment:
Q  179 tcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttatta 278  Q
    ||||||||||||| ||||| ||| |||||||||||| ||  | | ||||||||||||||||| | || ||||| ||| | || ||||| || |||||| |    
T  9235162 tcagatcactagaggcagaggaa-gacctagaaaaacta--agagaaactattaagaaagatatagagattaatgagctggatcgaaatatggtttatga 9235258  T
Q  279 ttgaacattatgccgtaatttgatccatgtagcc 312  Q
    | |||||||||| | |||||||||||||||||||    
T  9235259 tagaacattatggcataatttgatccatgtagcc 9235292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 311
Target Start/End: Original strand, 79647 - 79757
Alignment:
Q  201 aagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttg 300  Q
    |||||||||||||| ||||| ||||||||||| ||| ||||| |||||||| ||| | |||||||| || ||  || || || ||||||| ||| ||||     
T  79647 aagacctagaaaaactatcagataaactattaggaatgatttggaaattaatgagctggaccgaaatatggtgcatgatagaccattatggcgtgatttc 79746  T
Q  301 atccatgtagc 311  Q
    |||||||||||    
T  79747 atccatgtagc 79757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 311
Target Start/End: Original strand, 6889131 - 6889237
Alignment:
Q  205 cctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatcc 304  Q
    |||||||||| ||| | | ||||||||| ||||||||| || |||||  |||| | || ||| || |||||| || |||||||||| |||||||| ||||    
T  6889131 cctagaaaaactataagagaaactattaggaaagatttagagattaattagttgggccaaaatatggtttatgatagaacattatggcgtaatttaatcc 6889230  T
Q  305 atgtagc 311  Q
    |||||||    
T  6889231 atgtagc 6889237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 43423566 - 43423529
Alignment:
Q  278 attgaacattatgccgtaatttgatccatgtagccaac 315  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  43423566 attgaacattatggcgtaatttgatccatgtagccaac 43423529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 201 - 329
Target Start/End: Original strand, 30588581 - 30588709
Alignment:
Q  201 aagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttg 300  Q
    |||||||||||||| ||| | | ||| | ||||||||||| | || || || ||||| || ||||| || |||||| || |||||||||| ||| || ||    
T  30588581 aagacctagaaaaactataagagaaattgttaagaaagatctagagatgaatgagttggatcgaaatatggtttataatagaacattatgacgtgatatg 30588680  T
Q  301 atccatgtagccaacaaaacttagtggga 329  Q
    |||||||||||| ||   |||||||||||    
T  30588681 atccatgtagccgactccacttagtggga 30588709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 418158 - 418071
Alignment:
Q  225 aactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagcc 312  Q
    |||| ||| ||||||||| || ||||| ||||| || | |||  | |||||| || |||||||||| |||||||||||||||||||||    
T  418158 aacttttaggaaagatttagagattaatgagttggatccaaatgtggtttatgatagaacattatggcgtaatttgatccatgtagcc 418071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 32759713 - 32759751
Alignment:
Q  204 acctagaaaaattatcaaataaactattaagaaagattt 242  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  32759713 acctagaaaaattataaaagaaactattaagaaagattt 32759751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 228 - 309
Target Start/End: Original strand, 2090574 - 2090655
Alignment:
Q  228 tattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgta 309  Q
    ||||| ||||||||| ||  |||| ||| |||| | ||| ||||||||| ||  ||||||||| ||||||||||||||||||    
T  2090574 tattaggaaagatttagaggttaatgagcttgatccaaatatagtttatgatccaacattatggcgtaatttgatccatgta 2090655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 3775239 - 3775179
Alignment:
Q  176 tagtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaa 237  Q
    |||||| ||||||||| ||||| ||| |||||||||||| ||| | ||||||||||||||||    
T  3775239 tagtcaaatcactagaggcagaagaa-gacctagaaaaactataagataaactattaagaaa 3775179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 27386553 - 27386602
Alignment:
Q  280 tgaacattatgccgtaatttgatccatgtagccaacaaaacttagtggga 329  Q
    ||||||||||| ||||||||||||||||||||| ||   |||||||||||    
T  27386553 tgaacattatggcgtaatttgatccatgtagccgaccccacttagtggga 27386602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 224 - 345
Target Start/End: Complemental strand, 160449 - 160328
Alignment:
Q  224 aaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagccaacaaaactta 323  Q
    ||||||||| ||||||||  |||||||| ||||| |||||||| || |||||| || |||||||||| ||||||||||  ||||||||||||   |||||    
T  160449 aaactattaggaaagattaagaaattaatgagttcgaccgaaatatggtttatgatagaacattatggcgtaatttgaatcatgtagccaaccccactta 160350  T
Q  324 gtgggaaacgacttggatgttg 345  Q
    |||||||| | ||||| |||||    
T  160349 gtgggaaaaggcttggttgttg 160328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 176 - 329
Target Start/End: Complemental strand, 28511973 - 28511821
Alignment:
Q  176 tagtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagttta 275  Q
    |||||||||||||||| ||||| |||||||||||||||| ||| | | ||| || || |||||| || || ||||| ||||| |||| ||| || |||||    
T  28511973 tagtcagatcactagaggcaga-gaaagacctagaaaaactattagagaaattactaggaaagacttggagattaatgagttggaccaaaacatggttta 28511875  T
Q  276 ttattgaacattatgccgtaatttgatccatgtagccaacaaaacttagtggga 329  Q
    | || |||||||||| |||||||||||| |||||||| ||   |||||||||||    
T  28511874 tgatagaacattatggcgtaatttgatcaatgtagccgaccccacttagtggga 28511821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 229 - 345
Target Start/End: Complemental strand, 27072607 - 27072491
Alignment:
Q  229 attaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagccaacaaaacttagtggg 328  Q
    |||| ||||||||| |||||||| ||||| ||| |||| || |||||| || |||||||||| ||||||||||||||||||||| || |  |||||||||    
T  27072607 attaggaaagatttagaaattaaagagttggacagaaatatggtttatgatagaacattatggcgtaatttgatccatgtagccgaccatgcttagtggg 27072508  T
Q  329 aaacgacttggatgttg 345  Q
    ||| | ||||| |||||    
T  27072507 aaaaggcttggttgttg 27072491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 224 - 331
Target Start/End: Original strand, 50846719 - 50846826
Alignment:
Q  224 aaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagccaacaaaactta 323  Q
    ||||||||  ||||||||| ||||||||||||||  ||| ||| ||||||||| || |||||||||| | |||||||||| |||||||| |||  |||||    
T  50846719 aaactatttggaaagatttggaaattaacgagttgaaccaaaatatagtttatgatagaacattatggcataatttgatctatgtagccgacaccactta 50846818  T
Q  324 gtgggaaa 331  Q
    ||||||||    
T  50846819 gtgggaaa 50846826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 225 - 314
Target Start/End: Complemental strand, 43375722 - 43375633
Alignment:
Q  225 aactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagccaa 314  Q
    |||||||||||||||||| || ||||| ||||| |||||||| || ||| || || |||||||||| | |||||||||||||||||||||    
T  43375722 aactattaagaaagatttagagattaatgagttggaccgaaatatggttcatgatagaacattatgacataatttgatccatgtagccaa 43375633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 224 - 345
Target Start/End: Complemental strand, 52532741 - 52532620
Alignment:
Q  224 aaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagccaacaaaactta 323  Q
    ||||||||| ||||||||| |||||||| ||||| || | ||| || |||||| || |||||||||| ||||||||||| ||||||||| ||   |||||    
T  52532741 aaactattaggaaagatttagaaattaatgagttggaacaaaatatggtttatgatagaacattatggcgtaatttgattcatgtagccgaccccactta 52532642  T
Q  324 gtgggaaacgacttggatgttg 345  Q
    |||||||| | ||||| |||||    
T  52532641 gtgggaaaaggcttggttgttg 52532620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 201 - 311
Target Start/End: Complemental strand, 36339951 - 36339842
Alignment:
Q  201 aagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttg 300  Q
    |||||||||||||| ||||| | ||||||||| ||||||||| |||||||| ||||| ||| |||| || ||| || ||  |||||||||  ||||||||    
T  36339951 aagacctagaaaaactatcagagaaactattaggaaagattt-gaaattaatgagttggacagaaacatggttaatgataaaacattatgaagtaatttg 36339853  T
Q  301 atccatgtagc 311  Q
    |||||||||||    
T  36339852 atccatgtagc 36339842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 201 - 312
Target Start/End: Original strand, 9509452 - 9509563
Alignment:
Q  201 aagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttg 300  Q
    |||||||||||||| ||| | ||||||||||| |||||||||  |   ||| ||||| || | ||| || |||||| ||||||||||||| ||||||| |    
T  9509452 aagacctagaaaaactataagataaactattaggaaagatttacagcctaatgagttagagccaaatatggtttatgattgaacattatggcgtaattcg 9509551  T
Q  301 atccatgtagcc 312  Q
    ||||||||||||    
T  9509552 atccatgtagcc 9509563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 329
Target Start/End: Original strand, 8796318 - 8796471
Alignment:
Q  175 atagtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagttt 274  Q
    ||||||||||||||||| ||||| ||| |||| | ||||| | | | | ||||||||||||||||| | || ||||| || || ||  |||| || ||||    
T  8796318 atagtcagatcactagaggcagaggaa-gaccaataaaaactttaagagaaactattaagaaagatctagatattaatgacttggattgaaatatggttt 8796416  T
Q  275 attattgaacattatgccgtaatttgatccatgtagccaacaaaacttagtggga 329  Q
    || || |||||||||| |||||||| |||||||||||| ||   |||||||||||    
T  8796417 atgatagaacattatggcgtaatttaatccatgtagccgaccccacttagtggga 8796471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 201 - 350
Target Start/End: Original strand, 2544732 - 2544876
Alignment:
Q  201 aagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttg 300  Q
    |||||||||||||| ||||| | |||||||     ||||||| ||||| || ||||| || ||||| || |||||| || |||||||||| | |||||||    
T  2544732 aagacctagaaaaactatcagagaaactat-----aagatttggaaatcaatgagttggagcgaaatatggtttataatagaacattatggcataatttg 2544826  T
Q  301 atccatgtagccaacaaaacttagtgggaaacgacttggatgttgatgta 350  Q
    |||||||||||| ||   ||||||||| ||| | ||||| ||||| ||||    
T  2544827 atccatgtagccgaccccacttagtggtaaaaggcttggttgttgttgta 2544876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 329
Target Start/End: Complemental strand, 3819004 - 3818876
Alignment:
Q  201 aagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttg 300  Q
    ||||||| |||||| ||| | | ||||||||||||||||||| || ||||| |||||  |  |||| || |||||| || |||||||||| ||  |||||    
T  3819004 aagaccttgaaaaactataagagaaactattaagaaagatttagagattaatgagttgaatagaaatatggtttatgatggaacattatgtcgccatttg 3818905  T
Q  301 atccatgtagccaacaaaacttagtggga 329  Q
    |||||||||||| ||   |||||||||||    
T  3818904 atccatgtagccgactgcacttagtggga 3818876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 5338918 - 5338961
Alignment:
Q  272 tttattattgaacattatgccgtaatttgatccatgtagccaac 315  Q
    |||||||| |||||||||| ||||||||||||||||||||||||    
T  5338918 tttattatagaacattatggcgtaatttgatccatgtagccaac 5338961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 271 - 345
Target Start/End: Complemental strand, 28090772 - 28090698
Alignment:
Q  271 gtttattattgaacattatgccgtaatttgatccatgtagccaacaaaacttagtgggaaacgacttggatgttg 345  Q
    |||||| || |||||||||| ||||||||||||||||||||| ||   ||||||||||| | ||||||| |||||    
T  28090772 gtttatgatagaacattatggcgtaatttgatccatgtagccgaccccacttagtgggataagacttggttgttg 28090698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 201 - 329
Target Start/End: Complemental strand, 32404674 - 32404546
Alignment:
Q  201 aagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttg 300  Q
    |||||||| ||||| ||| | | ||||||||| ||||||||| || ||||| |||||  | | ||| || |||||| ||  ||||| ||| |||||||||    
T  32404674 aagacctacaaaaactataagagaaactattaggaaagatttagagattaatgagttaaatccaaacatggtttatgatataacataatggcgtaatttg 32404575  T
Q  301 atccatgtagccaacaaaacttagtggga 329  Q
    |||||||||||| ||   |||||||||||    
T  32404574 atccatgtagccgaccccacttagtggga 32404546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 201 - 329
Target Start/End: Original strand, 41560363 - 41560491
Alignment:
Q  201 aagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttg 300  Q
    |||||||||||||  ||| | | ||||||||| || | |||| || ||||| ||||| || | ||| || | |||| || |||||||||| |||||||||    
T  41560363 aagacctagaaaagctataagagaaactattaggatacatttagagattaatgagttggatccaaatatgggttatgatagaacattatggcgtaatttg 41560462  T
Q  301 atccatgtagccaacaaaacttagtggga 329  Q
    |||||||||||| ||   |||||||||||    
T  41560463 atccatgtagccgaccccacttagtggga 41560491  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 303
Target Start/End: Original strand, 1661576 - 1661655
Alignment:
Q  224 aaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatc 303  Q
    ||||||||| ||||||||| |||||||||||||| ||||||||  | |||| | || ||||||| || ||||| ||||||    
T  1661576 aaactattaggaaagatttagaaattaacgagttggaccgaaatgtggtttgtgatagaacattttggcgtaaattgatc 1661655  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 247 - 350
Target Start/End: Complemental strand, 25715428 - 25715325
Alignment:
Q  247 attaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagccaacaaaacttagtgggaaacgacttggatgttga 346  Q
    ||||| |||||  ||||||| || |||||| || ||| |||||| ||||||||||||||||||||| ||   ||||||||||| | | ||||| |||||     
T  25715428 attaatgagttgaaccgaaatatggtttatgatagaatattatggcgtaatttgatccatgtagccgacctcacttagtgggataaggcttggttgttgt 25715329  T
Q  347 tgta 350  Q
    ||||    
T  25715328 tgta 25715325  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 304
Target Start/End: Original strand, 40416505 - 40416608
Alignment:
Q  201 aagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttg 300  Q
    |||||||||||||| ||| | | ||||||||||||||||| |  | ||||| ||||| || ||||| || |||||| || ||||||||||  ||||| ||    
T  40416505 aagacctagaaaaactataagacaaactattaagaaagatctatagattaatgagttggatcgaaatatggtttatgatagaacattatggtgtaatgtg 40416604  T
Q  301 atcc 304  Q
    ||||    
T  40416605 atcc 40416608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 201 - 311
Target Start/End: Complemental strand, 9599542 - 9599432
Alignment:
Q  201 aagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccgaaaaatagtttattattgaacattatgccgtaatttg 300  Q
    |||||||||||||| ||  | | ||||||||| |||| |||| ||  |||| |||||||| | | | || |||||| || |||| ||||| |||||||||    
T  9599542 aagacctagaaaaactacaagagaaactattaggaaatatttagagtttaatgagtttgatccagatatggtttatgatagaacgttatggcgtaatttg 9599443  T
Q  301 atccatgtagc 311  Q
    |||||||||||    
T  9599442 atccatgtagc 9599432  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 329
Target Start/End: Complemental strand, 37462954 - 37462896
Alignment:
Q  271 gtttattattgaacattatgccgtaatttgatccatgtagccaacaaaacttagtggga 329  Q
    |||||| || |||||||||| ||||||||||||||||||||| ||   |||||||||||    
T  37462954 gtttatcatagaacattatggcgtaatttgatccatgtagccgaccccacttagtggga 37462896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 253 - 351
Target Start/End: Complemental strand, 40568506 - 40568408
Alignment:
Q  253 gagtttgaccgaaaaatagtttattattgaacattatgccgtaatttgatccatgtagccaacaaaacttagtgggaaacgacttggatgttgatgtag 351  Q
    ||||| |||| ||| || |||||| || ||| | |||| ||||||||||||||||||||||||   ||||||||||| | | ||||| ||||| |||||    
T  40568506 gagttggaccaaaatatggtttatgatagaaaactatggcgtaatttgatccatgtagccaaccccacttagtgggataaggcttggttgttgttgtag 40568408  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 17269067 - 17269026
Alignment:
Q  271 gtttattattgaacattatgccgtaatttgatccatgtagcc 312  Q
    |||||| || |||||||||| |||||||||||||||||||||    
T  17269067 gtttatgatagaacattatggcgtaatttgatccatgtagcc 17269026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 27847878 - 27847837
Alignment:
Q  271 gtttattattgaacattatgccgtaatttgatccatgtagcc 312  Q
    |||||| || ||||||||||||||||||| ||||||||||||    
T  27847878 gtttatgatggaacattatgccgtaattttatccatgtagcc 27847837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 271 - 329
Target Start/End: Complemental strand, 58304 - 58246
Alignment:
Q  271 gtttattattgaacattatgccgtaatttgatccatgtagccaacaaaacttagtggga 329  Q
    |||||| || |||||||||| ||||||||||||||||||||| ||  ||||||||||||    
T  58304 gtttatgatagaacattatgtcgtaatttgatccatgtagccgacccaacttagtggga 58246  T

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Target: scaffold0199 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 14787 - 14831
Alignment:
Q  271 gtttattattgaacattatgccgtaatttgatccatgtagccaac 315  Q
    |||||| |||||||| |||| ||||||||||||||||||||||||    
T  14787 gtttatgattgaacactatggcgtaatttgatccatgtagccaac 14831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 264
Target Start/End: Complemental strand, 178593 - 178505
Alignment:
Q  175 atagtcagatcactagaagcagatgaaagacctagaaaaattatcaaataaactattaagaaagattttgaaattaacgagtttgaccga 264  Q
    ||||||| ||||||||| || || | |||||||||||||| ||| | | ||||||||||||||||| | || ||||| ||||| ||||||    
T  178593 atagtcatatcactagaggcgga-gtaagacctagaaaaactataagagaaactattaagaaagatatagagattaatgagttggaccga 178505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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