View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12991_low_8 (Length: 709)
Name: NF12991_low_8
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12991_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 9 - 422
Target Start/End: Original strand, 43610285 - 43610696
Alignment:
| Q |
9 |
tcgaagaaaatggttggatattcgaatcaacttcaactttaaatttctcgcctaagcccaaatcctcattaggcttcaccacaaattagatgccgaaata |
108 |
Q |
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| T |
43610285 |
tcgaacaatatggttggatatccaaatcaactttaacttcaaatttctcgcctaagcccaaatcctcattaggcttcaccacaaattagatgttgaaata |
43610384 |
T |
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| Q |
109 |
cgcatgtaacctcatcggcaagtaatcatatgcatcaggagaaacatgtacacactctataataaaatcctctcactcatctcattcataagctaatttg |
208 |
Q |
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| T |
43610385 |
cacatgtaacctcatcggcaagtaatcatatgcatcaggagaaacatgtacacactcta--ataaaatcctctctctcatctcattcataagctaatttg |
43610482 |
T |
|
| Q |
209 |
agtgtctaagttattgcacgttccactctctccaatcattgtcctactcacaccgatgagctcagcttaactatcgccctacgccgtgcactgcatcaac |
308 |
Q |
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| T |
43610483 |
agtgtctaagtgattgcacattccactctctccaatcgttgtcctactcacaccgatgagctcagcttaactgtcgtcctacgccgtgcaccgcatcaac |
43610582 |
T |
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| Q |
309 |
tctgatcatcgatgttgatctacttcagatcatgagctcgagaacttcccatccaacacctaaagaaaaactcaaccttctcgaacagtagcaaggttaa |
408 |
Q |
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| T |
43610583 |
tctgatcatcgatattgatctacttcagatcatgagctcgagaacttcccatccaacacctaaagaaaaactcgaccttctcgaacagtagcaaggttaa |
43610682 |
T |
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| Q |
409 |
aagaagaagtccta |
422 |
Q |
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| T |
43610683 |
aagaagaagtccta |
43610696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 419 - 709
Target Start/End: Original strand, 43610804 - 43611095
Alignment:
| Q |
419 |
cctacatccttaaaaccttcattagcaagtcaatccctcaaacctggagtgcaacaaaacataagaagtactataaagttagccgaaaatggctactata |
518 |
Q |
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| T |
43610804 |
cctacatccttaaaaccttcctcagcaagtcaatccctcaaacctggattgcaacaaaacttaagaagtactataaagttagccgaaaatggctactata |
43610903 |
T |
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| Q |
519 |
tttagagaannnnnnnattcattgacttgttaaccattcctatttagagatagatggagtgatttttctttcaacataccgaatctatttaagctaaatc |
618 |
Q |
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| T |
43610904 |
tttagagagtttttttattcattgacttgttaaccattcctatttagagatagatggagtgatttttctttcaacataccgaatctatttaagctaaatc |
43611003 |
T |
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| Q |
619 |
ttactcgaggctgcctaattccattttccacggttatctactatcta-ccataaatttgtgttggtttgaaggccatttacatagggctgaa |
709 |
Q |
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| T |
43611004 |
ttactcgaggctgcctaattccattttccacggttatctactatctacccataaatttgtgttggtttgaaggccatttacataggactgaa |
43611095 |
T |
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