View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12992_high_4 (Length: 396)
Name: NF12992_high_4
Description: NF12992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12992_high_4 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 125 - 396
Target Start/End: Complemental strand, 26495801 - 26495530
Alignment:
| Q |
125 |
ggaagaagaaaaaatatattttgaagaagggattgttgagagaattcaaaagggtgattgaatcaacaagaaaaaatggctaccgaggcgtttatgttaa |
224 |
Q |
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| T |
26495801 |
ggaagaagaaaaaatatattttgaagaagggattgttgagagaattcaaaagggtgattgaatcaacaagaaaaaatggctaccgaggcgtttatgttaa |
26495702 |
T |
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| Q |
225 |
aagaaagcgcctatttttcattaagagcattgaagagtctttttgtgttattatcagctattgttatggtacttttgttaccatttagagggagaagaag |
324 |
Q |
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| T |
26495701 |
aagaaagcgcctatttttcattaagagcattgaagagtctttttgtgttaatatcagctattgttatggtacttttgttaccatttagagggagaagaag |
26495602 |
T |
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| Q |
325 |
ggtatctcctgttgaaaaagaagagaagatacaaaatcatgagtgttgtcatcatcatcggaaaggcacggt |
396 |
Q |
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| T |
26495601 |
ggtatctcctgttgaaaaagaagagaagatacaaaatcatgagtgttgtcatcatcatcggaaaggcacggt |
26495530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 26495910 - 26495840
Alignment:
| Q |
18 |
atatttggcaaaaacatcaaaactatttttaccataataacaacctaagaccaacataaaaacatctgttg |
88 |
Q |
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| T |
26495910 |
atatttggcaaaaacatcaaaactatttttaccataataacaacctaagacgaacataaaaacatctgttg |
26495840 |
T |
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