View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12992_low_1 (Length: 568)
Name: NF12992_low_1
Description: NF12992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12992_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Complemental strand, 52170803 - 52170254
Alignment:
| Q |
1 |
gtaagtagctgaagaaggatcaacaagggtgtataaaactgatgaattatcactacagtcaacactgtgaaacgtattcggtagagtttcagttgtaaga |
100 |
Q |
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| T |
52170803 |
gtaagtagctgtagaaggatcaacaagggtgtataaaactgatgaattatcactacattcaacactgtgaaacgtattcggtagagtttcagttgtaaga |
52170704 |
T |
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| Q |
101 |
aggcaatagtaaaacaaagtcacgttagcgacatcatcataaagtttaaacaaactgctattgaatgtgatgttgtcgacaggaacacaaacatcatctc |
200 |
Q |
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| T |
52170703 |
aggcaatagtaaaacaaagtcacgttagcgacatcatcataaagtttaaacaaagtgctattgaatgtgatgttgtcgacaggaacacaaacatcatctc |
52170604 |
T |
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| Q |
201 |
tcgagtaatcttccctagtaactctgagtttctgtgttgaattgtcccattcaagaatactgtatttcaagaaagaatcatccattgttaacttggggac |
300 |
Q |
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| T |
52170603 |
tcgagtaatcttccctagtaactctgagcttctgtgttgaattgtcccattcaagaatactgtatttcaagaaagaatcatccgttgttaacttggggac |
52170504 |
T |
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| Q |
301 |
actgtcctcacatgtgagttccatattaggatcatcattcacaccgcaatactttcctctatttcctccccagaacggatacttgagatttgtgatgttg |
400 |
Q |
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| T |
52170503 |
actgtcctcacatgtgagttccatattaggatcatcattcacaccgcaatactttcctctatttcctcccctgaacggatacttgagatttgtgatgttg |
52170404 |
T |
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| Q |
401 |
ctactttcgcagataaaagcgtcgttgcagttcgtgtgttggatatcatcattctcacagagacatgatggaaaattggtgattgagatcatcaaaagtg |
500 |
Q |
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| T |
52170403 |
ctactttcgcagataaaagcgtcgttgcagttcgtgtgttggatatcatcattctcacagagacatgatggaaaattggtgattgagatcatcaaaagtg |
52170304 |
T |
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| Q |
501 |
ctagaacaaacaagttcattcttgtcctagaacaaagaagtgtgaataat |
550 |
Q |
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| T |
52170303 |
ctagaacaaacaagttcattcttgccctagaacaaagaagtgtgaataat |
52170254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 220 - 503
Target Start/End: Original strand, 31610369 - 31610646
Alignment:
| Q |
220 |
aactctgagtttctgtgttgaattgtcccattcaagaatactgtatttcaagaaagaatcatccattgttaacttggggacactgtcctcacatgtgagt |
319 |
Q |
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| T |
31610369 |
aactctgagtctctgtgttgtattgtcccattcaagaatacggtatttgaccaaatta------attgttatcttagggacacttccttcgcatacgagc |
31610462 |
T |
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| Q |
320 |
tccatattaggatcatcattcacaccgcaatactttcctctatttcctccccagaacggatacttgagatttgtgatgttgctactttcgcagataaaag |
419 |
Q |
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| T |
31610463 |
tccatcttaggatcaccagaaacaccacaatacttttctctgtttcctccccagtacggatacttgaggtttgagatgctgctactttcgcaggtaaaag |
31610562 |
T |
|
| Q |
420 |
cgtcgttgcagttcgtgtgttggatatcatcattctcacagagacatgatggaaaattggtgattgagatcatcaaaagtgcta |
503 |
Q |
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| T |
31610563 |
cgttgttgcagttagtgtgttggatattattgttgtcacaaagacatgttggaattttggtgattgagatcatcaaaactgcta |
31610646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 31621194 - 31621257
Alignment:
| Q |
204 |
agtaatcttccctagtaactctgagtttctgtgttgaattgtcccattcaagaatactgtattt |
267 |
Q |
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| T |
31621194 |
agtaatcgtctctagcgactgtgagtttctgtgttgtattgtcccattcaagaatacggtattt |
31621257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 31636189 - 31636252
Alignment:
| Q |
204 |
agtaatcttccctagtaactctgagtttctgtgttgaattgtcccattcaagaatactgtattt |
267 |
Q |
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| T |
31636189 |
agtaatcgtctctagcgactgtgagtttctgtgttgtattgtcccattcaagaatacggtattt |
31636252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 341 - 402
Target Start/End: Original strand, 31597456 - 31597517
Alignment:
| Q |
341 |
acaccgcaatactttcctctatttcctccccagaacggatacttgagatttgtgatgttgct |
402 |
Q |
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| T |
31597456 |
acaccacaataatttcctctattttctccccagaatggatattcaagatttgtgatgttgct |
31597517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 431
Target Start/End: Original strand, 31621351 - 31621415
Alignment:
| Q |
367 |
tccccagaacggatacttgagatttgtgatgttgctactttcgcagataaaagcgtcgttgcagt |
431 |
Q |
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| T |
31621351 |
tccccagaatggatacttgaggtttgtgatgctgctacttccgcattcaaaagcttcgttgcagt |
31621415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 431
Target Start/End: Original strand, 31636346 - 31636410
Alignment:
| Q |
367 |
tccccagaacggatacttgagatttgtgatgttgctactttcgcagataaaagcgtcgttgcagt |
431 |
Q |
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| T |
31636346 |
tccccagaatggatacttgaggtttgtgatgctgctacttccgcattcaaaagcttcgttgcagt |
31636410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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