View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12992_low_11 (Length: 250)

Name: NF12992_low_11
Description: NF12992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12992_low_11
NF12992_low_11
[»] chr4 (17 HSPs)
chr4 (1-246)||(3242277-3242522)
chr4 (1-246)||(54689902-54690148)
chr4 (1-246)||(54699333-54699579)
chr4 (1-246)||(26812461-26812706)
chr4 (1-246)||(26821928-26822173)
chr4 (1-246)||(3918019-3918265)
chr4 (1-246)||(37059039-37059284)
chr4 (1-246)||(15842888-15843133)
chr4 (48-238)||(20884447-20884636)
chr4 (48-246)||(50516488-50516685)
chr4 (48-246)||(11482315-11482512)
chr4 (51-221)||(23622919-23623088)
chr4 (50-239)||(18125409-18125595)
chr4 (51-128)||(16489947-16490025)
chr4 (180-238)||(28256097-28256155)
chr4 (159-223)||(112634-112698)
chr4 (159-223)||(14917028-14917092)
[»] chr3 (20 HSPs)
chr3 (1-246)||(24794536-24794781)
chr3 (1-246)||(28367643-28367888)
chr3 (1-246)||(28375461-28375706)
chr3 (1-246)||(28383283-28383528)
chr3 (1-246)||(28351710-28351955)
chr3 (1-246)||(38529167-38529412)
chr3 (1-246)||(4951547-4951791)
chr3 (48-233)||(5385690-5385874)
chr3 (48-246)||(13328268-13328465)
chr3 (48-246)||(23487041-23487240)
chr3 (48-246)||(46305563-46305760)
chr3 (51-221)||(17529877-17530046)
chr3 (51-221)||(32877870-32878039)
chr3 (51-221)||(54624655-54624824)
chr3 (51-221)||(48978670-48978835)
chr3 (51-221)||(48988210-48988375)
chr3 (50-241)||(7783984-7784194)
chr3 (95-221)||(19388809-19388936)
chr3 (50-239)||(4361513-4361699)
chr3 (155-199)||(24285493-24285537)
[»] chr5 (29 HSPs)
chr5 (1-246)||(24422230-24422475)
chr5 (1-246)||(24412781-24413026)
chr5 (1-246)||(18568991-18569238)
chr5 (1-243)||(30454194-30454436)
chr5 (1-246)||(30459249-30459494)
chr5 (1-246)||(30444819-30445064)
chr5 (1-246)||(22489138-22489383)
chr5 (1-246)||(4635898-4636143)
chr5 (51-246)||(42732567-42732761)
chr5 (10-229)||(24244050-24244267)
chr5 (10-229)||(24290674-24290891)
chr5 (1-238)||(13815371-13815605)
chr5 (48-246)||(33955489-33955687)
chr5 (48-242)||(11223376-11223568)
chr5 (48-246)||(20035999-20036197)
chr5 (48-232)||(20834431-20834614)
chr5 (51-221)||(5600580-5600749)
chr5 (51-221)||(5610226-5610395)
chr5 (48-204)||(22118134-22118291)
chr5 (71-246)||(26652642-26652816)
chr5 (71-246)||(26924227-26924401)
chr5 (51-221)||(31150651-31150820)
chr5 (155-246)||(22448320-22448411)
chr5 (155-239)||(37514856-37514940)
chr5 (180-246)||(22457656-22457722)
chr5 (48-221)||(16110881-16111058)
chr5 (159-223)||(718954-719018)
chr5 (159-223)||(727934-727998)
chr5 (159-223)||(6331671-6331735)
[»] scaffold0028 (3 HSPs)
scaffold0028 (1-246)||(94420-94666)
scaffold0028 (1-246)||(103861-104107)
scaffold0028 (159-223)||(82272-82336)
[»] chr6 (12 HSPs)
chr6 (1-246)||(23895606-23895851)
chr6 (1-246)||(18420504-18420749)
chr6 (48-246)||(22066293-22066491)
chr6 (50-241)||(14102308-14102500)
chr6 (48-234)||(23884492-23884677)
chr6 (49-246)||(17512213-17512408)
chr6 (70-236)||(10259779-10259945)
chr6 (96-241)||(12173469-12173613)
chr6 (95-241)||(11421446-11421591)
chr6 (95-213)||(23110242-23110359)
chr6 (51-177)||(12415064-12415190)
chr6 (55-149)||(13218359-13218453)
[»] scaffold0482 (1 HSPs)
scaffold0482 (1-241)||(3486-3726)
[»] chr8 (25 HSPs)
chr8 (1-241)||(7789073-7789313)
chr8 (1-246)||(20714022-20714267)
chr8 (10-233)||(18883163-18883384)
chr8 (1-236)||(25051063-25051295)
chr8 (48-246)||(42712168-42712365)
chr8 (1-236)||(25037026-25037258)
chr8 (10-229)||(18232890-18233107)
chr8 (10-229)||(18242341-18242558)
chr8 (1-238)||(18143427-18143661)
chr8 (10-229)||(18251792-18252009)
chr8 (49-246)||(12925355-12925552)
chr8 (48-246)||(20030179-20030376)
chr8 (48-246)||(20044818-20045015)
chr8 (51-236)||(31575411-31575595)
chr8 (48-246)||(12767631-12767830)
chr8 (1-238)||(4843720-4843956)
chr8 (94-246)||(33601763-33601914)
chr8 (88-246)||(12915499-12915657)
chr8 (94-246)||(33592124-33592275)
chr8 (49-234)||(24096077-24096262)
chr8 (48-235)||(15833950-15834137)
chr8 (89-226)||(24634009-24634145)
chr8 (171-238)||(20714417-20714484)
chr8 (94-211)||(42896174-42896290)
chr8 (175-233)||(26194048-26194106)
[»] scaffold0040 (2 HSPs)
scaffold0040 (1-246)||(30813-31058)
scaffold0040 (1-246)||(9998-10239)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-246)||(408281-408526)
[»] chr7 (17 HSPs)
chr7 (1-246)||(7592959-7593204)
chr7 (1-246)||(15174493-15174738)
chr7 (10-229)||(11634337-11634554)
chr7 (48-238)||(14634776-14634965)
chr7 (48-246)||(14644467-14644665)
chr7 (48-238)||(33292175-33292364)
chr7 (48-246)||(15947362-15947560)
chr7 (49-246)||(32817997-32818193)
chr7 (48-246)||(9736946-9737143)
chr7 (50-236)||(19352589-19352775)
chr7 (94-246)||(13874432-13874582)
chr7 (122-239)||(48710004-48710121)
chr7 (54-221)||(4306573-4306739)
chr7 (48-116)||(48711401-48711469)
chr7 (159-223)||(607218-607282)
chr7 (159-223)||(616313-616377)
chr7 (159-246)||(13951987-13952074)
[»] chr2 (13 HSPs)
chr2 (1-246)||(31710456-31710701)
chr2 (2-246)||(24022732-24022976)
chr2 (1-241)||(14273158-14273397)
chr2 (48-239)||(35877516-35877706)
chr2 (48-239)||(35885005-35885195)
chr2 (48-239)||(36724718-36724908)
chr2 (48-246)||(3396923-3397121)
chr2 (51-221)||(1800493-1800662)
chr2 (51-221)||(22632402-22632571)
chr2 (51-221)||(1790999-1791164)
chr2 (70-240)||(18578707-18578877)
chr2 (166-241)||(29911278-29911353)
chr2 (155-224)||(16446670-16446739)
[»] chr1 (11 HSPs)
chr1 (48-241)||(5378419-5378613)
chr1 (1-246)||(15809966-15810216)
chr1 (48-238)||(14272016-14272205)
chr1 (48-232)||(14281888-14282071)
chr1 (51-241)||(26906241-26906431)
chr1 (48-246)||(40999025-40999224)
chr1 (48-224)||(3470949-3471124)
chr1 (62-241)||(21633594-21633772)
chr1 (94-246)||(21919421-21919572)
chr1 (48-235)||(30676788-30676976)
chr1 (92-233)||(28310018-28310155)
[»] scaffold0010 (1 HSPs)
scaffold0010 (10-233)||(256921-257142)
[»] scaffold0206 (1 HSPs)
scaffold0206 (48-246)||(2109-2306)
[»] scaffold0021 (3 HSPs)
scaffold0021 (48-246)||(124047-124244)
scaffold0021 (70-221)||(100002-100152)
scaffold0021 (48-116)||(143169-143237)
[»] scaffold0269 (1 HSPs)
scaffold0269 (51-221)||(14830-14999)
[»] scaffold0247 (1 HSPs)
scaffold0247 (51-221)||(24593-24762)
[»] scaffold0053 (1 HSPs)
scaffold0053 (94-246)||(2251-2402)
[»] scaffold0334 (1 HSPs)
scaffold0334 (94-246)||(12538-12689)
[»] scaffold0223 (1 HSPs)
scaffold0223 (48-211)||(27078-27246)
[»] scaffold0233 (1 HSPs)
scaffold0233 (1-48)||(26309-26356)
[»] scaffold0096 (1 HSPs)
scaffold0096 (159-223)||(49501-49565)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 3242522 - 3242277
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3242522 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 3242423  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3242422 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 3242323  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3242322 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 3242277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 54690148 - 54689902
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54690148 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 54690049  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54690048 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 54689949  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct-tctctctc 246  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  54689948 gggtttggtgaaccaggataactctcctgtgttattctctctctctc 54689902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 54699579 - 54699333
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54699579 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 54699480  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54699479 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 54699380  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct-tctctctc 246  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  54699379 gggtttggtgaaccaggataactctcctgtgttattctctctctctc 54699333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 26812461 - 26812706
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  26812461 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacaggtgttacggactga 26812560  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26812561 tctggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 26812660  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  26812661 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 26812706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 26821928 - 26822173
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  26821928 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacaggtgttacggactga 26822027  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26822028 tctggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 26822127  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  26822128 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 26822173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 3918019 - 3918265
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3918019 cttaatagttttgagaaagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 3918118  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3918119 tctggtgtgatcaagaaattgtaatgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 3918218  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct-tctctctc 246  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  3918219 gggtttggtgaaccaggataactctcctgtgttattctctctctctc 3918265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 37059039 - 37059284
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||    
T  37059039 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacaggtgtaacggactga 37059138  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37059139 tctggtgtgatcaagatcttgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 37059238  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  37059239 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 37059284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 15843133 - 15842888
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||  || || ||||||    
T  15843133 cttaatagttttgagatagaaaatttcaacctttcttttgctagtgtgcaaagaattgtagaagcctgcttaggttgataatacaggtgtaacagactga 15843034  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||| |||||||||||  || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15843033 tctgatgtgatcaagatcttatagtgctagtcagaagtttctgttagcaagacaactatagtggataatctcacacgaggtgtggggactggaagtagcc 15842934  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    | ||||||||||||| ||||||||||||||||||||| ||||||||    
T  15842933 gagtttggtgaaccaagataactctcctgtgttattcctctctctc 15842888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 48 - 238
Target Start/End: Complemental strand, 20884636 - 20884447
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |  || ||||| | || ||||||||||   |     
T  20884636 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacggactgatctggtgtgatcaaaaccttatagtgttggttagaagtttct---ac 20884540  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||  | | |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20884539 caactgcatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggggaaccaggataactctcctgtgttattct 20884447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 246
Target Start/End: Complemental strand, 50516685 - 50516488
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||||||  |||||||||||||||||||||||  |||||||||||||||||||||||||||||  || ||||| | || |||| |||||   |     
T  50516685 gcaaagaattgtaacagcctgctgaggttgataatacaagggttacggactgatctggtgtgatcaagaccttatagtgttggttagaaatttct---ac 50516589  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttctctct 245  Q
    |||  ||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||    
T  50516588 caacggaatactatagtggataatctcacacgaagtgtggggactggaagtagtcgggtttggggaaccaggataactctcctgtgttattcttctttct 50516489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 48 - 246
Target Start/End: Original strand, 11482315 - 11482512
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||||| ||||| ||||||||||||||||||| |||||||||||||| ||||||||| ||||  || ||||| | || ||||||||||   |     
T  11482315 gcaaagaattgtagaagccggctgaggttgataatacaggggttacggactgatatggtgtgataaagaccttatagtgttggttagaagtttct---ac 11482411  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttctctct 245  Q
    |||  | | |||||||||||||||||||||||| ||||||||||| |||||||||||||||||  ||||||||||||||||||  ||||||||||| |||    
T  11482412 caactgtatactatagtggataatctcacacgaagtgtggggactagaagtagccgggtttggacaaccaggataactctcctacgttattcttctttct 11482511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 51 - 221
Target Start/End: Original strand, 23622919 - 23623088
Alignment:
Q  51 aagaattgtataagcctgctgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagca 149  Q
    |||||| ||| ||||||||||||||||||||||||||| || || |||||||||||||||||||| | ||| |||||||| ||||||||||||| |||||    
T  23622919 aagaatcgtagaagcctgctgaggttgataatacagagtgtaacagactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagca 23623018  T
Q  150 agaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
     || | ||||||||||||||||||||||  |||||||||||||| |||||| |||| || ||||||||||||    
T  23623019 ggata-ctatagtggataatctcacacgtagtgtggggactggacgtagcc-ggttaggcgaaccaggataa 23623088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 239
Target Start/End: Complemental strand, 18125595 - 18125409
Alignment:
Q  50 aaagaattgtataagcctgctgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagc 148  Q
    ||||||||| | ||| ||||||||||||||||||||  | || || || ||||||| |||||||||    ||  | |||| || |||||||| |||||||    
T  18125595 aaagaattgaagaagtctgctgaggttgataatacaaggtgtaacagaatgatctgttgtgatcaat---tttcaatgctggtaagaagtttttgttagc 18125499  T
Q  149 aagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattctt 239  Q
    | || | ||||| |||||||||||||||||||||||| ||| | || || |||| |||  ||||||||||||| |||| ||||| ||||||    
T  18125498 aggata-ctataatggataatctcacacgaggtgtggagaccgaaaataaccggatttaatgaaccaggataaatctcttgtgtcattctt 18125409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 16490025 - 16489947
Alignment:
Q  51 aagaattgtataagcctgctgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgct 128  Q
    |||||| ||| ||| ||||||||||||||||||| ||| || || ||||||| |||||||||||| ||||| |||||||    
T  16490025 aagaatcgtagaagtctgctgaggttgataatactgagtgtaacagactgatatggtgtgatcaacaaattatagtgct 16489947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 28256155 - 28256097
Alignment:
Q  180 gtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||||||||||| ||||||||   |||| ||||||| ||||| ||||||||||||||||    
T  28256155 gtgtggggactgaaagtagccaactttgatgaaccacgataaatctcctgtgttattct 28256097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 112634 - 112698
Alignment:
Q  159 tagtggataatctcacacgaggtgtggggactggaagtagccgg-gtttggtgaaccaggataact 223  Q
    ||||||||||||||||||  | |||||||| ||||||||||||| |||||| |||||| |||||||    
T  112634 tagtggataatctcacacttg-tgtggggagtggaagtagccggcgtttggcgaaccacgataact 112698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 14917028 - 14917092
Alignment:
Q  159 tagtggataatctcacacgaggtgtggggactggaagtagccgg-gtttggtgaaccaggataact 223  Q
    ||||||||||||||||||  | |||||||| ||||||||||||| |||||| |||||| |||||||    
T  14917028 tagtggataatctcacacttg-tgtggggagtggaagtagccggcgtttggcgaaccacgataact 14917092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 24794781 - 24794536
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24794781 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 24794682  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24794681 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 24794582  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  24794581 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 24794536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 28367888 - 28367643
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28367888 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 28367789  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28367788 tctggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 28367689  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  28367688 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 28367643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 28375706 - 28375461
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28375706 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 28375607  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28375606 tctggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 28375507  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  28375506 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 28375461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 28383528 - 28383283
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28383528 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 28383429  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28383428 tctggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 28383329  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  28383328 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 28383283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 28351955 - 28351710
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28351955 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctaaggttgataatacagaggttacggactga 28351856  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28351855 tctggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 28351756  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  28351755 gggtttggtgaaccagcataactctcctgtgttattcttctctctc 28351710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 38529412 - 38529167
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||   || || |||| |    
T  38529412 cttaatcgttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtagaagcctactgaggttgataatacaagtgtaacagactca 38529313  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||  || ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  38529312 tctggtgtgatcaagatcttatagtgctagtcagaaatttctgttagcaagacaactatagtggataatctcacacgaggtgtgggcactggaagtagcc 38529213  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    ||||||||||||| | |||||||||||||| |||||| ||||||||    
T  38529212 gggtttggtgaactatgataactctcctgtattattcctctctctc 38529167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 4951547 - 4951791
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||| ||| ||| |||||||||||||||||  || || ||||||    
T  4951547 cttaatagttt-gagatagaaaatttcaacctttcttttgctagtgtgtaaagaattgtagaaggctgttgaggttgataatacaggtgtaacagactga 4951645  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||| ||| |  |||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||| ||||| ||||||| |    
T  4951646 tctggtgtgaccaataccttgtagtgctagtcagaaatttctgttagcaagacaaatatagtggataatctcacacgaggtgtgaggacttgaagtagtc 4951745  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    | ||||||||||||| |||||||||| |||||||||||| ||||||    
T  4951746 gagtttggtgaaccaagataactctcatgtgttattcttatctctc 4951791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 48 - 233
Target Start/End: Original strand, 5385690 - 5385874
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||||| |||||||||||||||||| |||||| ||||||  |||||||||||||||||||||  || ||||| | || |||||||||| | ||    
T  5385690 gcaaagaattgtagaagcctgctgaggttgatgatacagtggttacatactgatctggtgtgatcaagaccttatagtgttggttagaagtttctatcag 5385789  T
Q  148 caagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgtt 233  Q
    |  | | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5385790 ct-gtatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgtt 5385874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 48 - 246
Target Start/End: Complemental strand, 13328465 - 13328268
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||||| |||| |||||||||||||||||||  |||||||||||||||||||||||||||||  |  ||||| | || ||||||||||   |     
T  13328465 gcaaagaattgtagaagcttgctgaggttgataatacaagggttacggactgatctggtgtgatcaagacctaatagtgttggttagaagtttct---ac 13328369  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttctctct 245  Q
    |||  | | |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||| |||    
T  13328368 caactgtatactatagtggataatctcacacgaagtgtggggactggaagtagtcgggtttggtgaaccaagataactctcctgtgttattattctttct 13328269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 48 - 246
Target Start/End: Original strand, 23487041 - 23487240
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||||| ||||||||||||||||||||||||  |||||| ||||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  23487041 gcaaagaattgtagaagcctgctgaggttgataatacaagggttacagactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 23487137  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactg--gaagtagccgggtttggtgaaccaggataactctcctgtgttattcttctct 243  Q
    |||  ||| ||||||||||||||||||||||||  |||||||||||  |||||| ||||| ||||||||||||||||||||||||||||||||||||| |    
T  23487138 caactgaatactatagtggataatctcacacgaaatgtggggactgtggaagtaaccgggattggtgaaccaggataactctcctgtgttattcttcttt 23487237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 48 - 246
Target Start/End: Complemental strand, 46305760 - 46305563
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  46305760 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacagactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 46305664  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct-tctctc 244  Q
    |||  | | |||| |||||||||||||| |||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||    
T  46305663 caactgtatactaaagtggataatctca-acgaagtgtggggactggaagtagccgggtttgatgaaccaagataactctcctgtgttattctctctctc 46305565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 51 - 221
Target Start/End: Complemental strand, 17530046 - 17529877
Alignment:
Q  51 aagaattgtataagcctgctgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagca 149  Q
    |||||| ||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||| | ||| |||||||| ||||||||||||| ||||     
T  17530046 aagaatcgtagaagcctgctgaggttgataatacagagtgtaacggactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagc- 17529948  T
Q  150 agaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
    || | |||||||||||||||||||||||  |||||||||||||| |||||| |||| || ||||||||||||    
T  17529947 aggatactatagtggataatctcacacgtagtgtggggactggacgtagcc-ggttaggcgaaccaggataa 17529877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 51 - 221
Target Start/End: Original strand, 32877870 - 32878039
Alignment:
Q  51 aagaattgtataagcctgctgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagca 149  Q
    |||||| ||| ||||||||||||||||||||||||||| || || |||||||||||||||||||| ||||| ||||| || |||||||||| || |||||    
T  32877870 aagaatcgtagaagcctgctgaggttgataatacagagtgtaacagactgatctggtgtgatcaacaaattatagtgttattcagaagtttatgatagca 32877969  T
Q  150 agaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
     || | ||||||||||||||||||||||  |||||||||||||| |||||| |||| || ||||||||||||    
T  32877970 tgata-ctatagtggataatctcacacgtagtgtggggactggacgtagcc-ggttaggcgaaccaggataa 32878039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 51 - 221
Target Start/End: Original strand, 54624655 - 54624824
Alignment:
Q  51 aagaattgtataagcctgctgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagca 149  Q
    |||||| ||| ||||||||||||||||||||||||||| || || |||||||||||| ||||||| | ||| |||||||| ||||||||||||| |||||    
T  54624655 aagaatcgtagaagcctgctgaggttgataatacagagtgtaacagactgatctggtatgatcaacatattatagtgctattcagaagtttctgatagca 54624754  T
Q  150 agaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
     || | ||||||||||||||||||||||  |||||||||||||| |||||| |||| || ||||||||||||    
T  54624755 ggata-ctatagtggataatctcacacgtagtgtggggactggacgtagcc-ggttaggcgaaccaggataa 54624824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 51 - 221
Target Start/End: Original strand, 48978670 - 48978835
Alignment:
Q  51 aagaattgtataagcctgctgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagca 149  Q
    |||||| ||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||| | ||| |||||||| |||||||||||||     |    
T  48978670 aagaatcgtagaagcctgctgaggttgataatacagagtgtaacggactgatctggtgtgatcaacatattatagtgctattcagaagtttctg-----a 48978764  T
Q  150 agaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
     | | |||||||||||||||||||||||  |||||||||||||| |||||| |||| || ||||||||||||    
T  48978765 tggatactatagtggataatctcacacgtagtgtggggactggacgtagcc-ggttaggcgaaccaggataa 48978835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 51 - 221
Target Start/End: Original strand, 48988210 - 48988375
Alignment:
Q  51 aagaattgtataagcctgctgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagca 149  Q
    |||||| ||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||| | ||| |||||||| |||||||||||||     |    
T  48988210 aagaatcgtagaagcctgctgaggttgataatacagagtgtaacggactgatctggtgtgatcaacatattatagtgctattcagaagtttctg-----a 48988304  T
Q  150 agaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
     | | |||||||||||||||||||||||  |||||||||||||| |||||| |||| || ||||||||||||    
T  48988305 tggatactatagtggataatctcacacgtagtgtggggactggacgtagcc-ggttaggcgaaccaggataa 48988375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 241
Target Start/End: Complemental strand, 7784194 - 7783984
Alignment:
Q  50 aaagaattgtataagcctgctgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagc 148  Q
    ||||||||||| ||||||||||||||||||||||||| | || || ||||||||||||||||||||||  || ||||| |||||| ||||||||||||||    
T  7784194 aaagaattgtagaagcctgctgaggttgataatacagggtgtaacagactgatctggtgtgatcaagaccttatagtgttagtcataagtttctgttagc 7784095  T
Q  149 aagaaa------------------actatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgt 230  Q
    |||| |                  ||| ||||||||||||||||| | |||||||| ||||||||||| | ||||||||||||||| | |  ||||||||    
T  7784094 aagacagtttctgttagcaagacaactgtagtggataatctcacatgtggtgtgggaactggaagtagtcaggtttggtgaaccagaacagttctcctgt 7783995  T
Q  231 gttattcttct 241  Q
    |||||||||||    
T  7783994 gttattcttct 7783984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 221
Target Start/End: Original strand, 19388809 - 19388936
Alignment:
Q  95 gactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgtta--gcaagaaaactatagtggataatctcacacgaggtgtggggactgg 192  Q
    ||||||| |||||| ||||| || || |||||||| |||||||||| || ||  ||  ||| |||||||| ||||||||||||||| ||||||||||| |    
T  19388809 gactgatatggtgtcatcaacaacttatagtgctattcagaagtttatgatatagct-gaatactatagtcgataatctcacacgaagtgtggggacttg 19388907  T
Q  193 aagtagccgggtttggtgaaccaggataa 221  Q
    |||||||||  ||||||||||||||||||    
T  19388908 aagtagccgattttggtgaaccaggataa 19388936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 239
Target Start/End: Complemental strand, 4361699 - 4361513
Alignment:
Q  50 aaagaattgtataagcctgctgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagc 148  Q
    ||||||||| | ||| ||||||||||||||||||||  | || || || ||||||| |||||||||    ||  | |||| || |||||||| |||||||    
T  4361699 aaagaattgaagaagtctgctgaggttgataatacaaggtgtaacagaatgatctgttgtgatcaat---tttcaatgctggtaagaagtttttgttagc 4361603  T
Q  149 aagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattctt 239  Q
    | || | ||||| |||||||||||||||||||||||| ||| | || || |||| |||  ||||||||||||| |||| ||||| ||||||    
T  4361602 aggata-ctataatggataatctcacacgaggtgtggagaccgaaaataaccggatttaatgaaccaggataaatctcttgtgtcattctt 4361513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 24285493 - 24285537
Alignment:
Q  155 actatagtggataatctcacacgaggtgtggggactggaagtagc 199  Q
    |||||||||||||||||||||||| |||| |||| ||||||||||    
T  24285493 actatagtggataatctcacacgaagtgtagggagtggaagtagc 24285537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 24422230 - 24422475
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24422230 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 24422329  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24422330 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 24422429  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    || |||||||||||||||||||||||||||||||||||||||||||    
T  24422430 ggatttggtgaaccaggataactctcctgtgttattcttctctctc 24422475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 24412781 - 24413026
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24412781 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacagactga 24412880  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24412881 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 24412980  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    || |||||||||||||||||||||||||||||||||||||||||||    
T  24412981 ggatttggtgaaccaggataactctcctgtgttattcttctctctc 24413026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 18568991 - 18569238
Alignment:
Q  1 cttaatagtttt-gagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactg 99  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18568991 cttaatagtttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactg 18569090  T
Q  100 atctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18569091 atctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagc 18569190  T
Q  200 cgggtttggtgaaccaggataactctcctgtgttattct-tctctctc 246  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18569191 cgggtttggtgaaccaggataactctcctgtgttattctctctctctc 18569238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 30454436 - 30454194
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  30454436 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacaggtgttacggactga 30454337  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30454336 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 30454237  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttctct 243  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  30454236 gggtttggtgaaccaggataactctcctgtgttatttttctct 30454194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 30459494 - 30459249
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||    
T  30459494 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgccgaggttgataatacaggtgttacggactga 30459395  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30459394 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 30459295  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  30459294 gggtttggtgaaccaggataactctcctgtgttatttttctctctc 30459249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 30445064 - 30444819
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  30445064 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacaggtgttatggactga 30444965  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30444964 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 30444865  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||    
T  30444864 gggtttggtgaatcaggataactctcctgtgttatttctctctctc 30444819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 22489138 - 22489383
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||  || |||||||||    
T  22489138 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtagaagtctgctgaggttgataatacaggtgtaacggactga 22489237  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||  || |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22489238 tctggtgtgatcaagatcttatagtgctagtcataagtttctgttagcaagacaactatagtggataatctcacacgaggtgtggggactggaagtagcc 22489337  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  22489338 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 22489383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 4635898 - 4636143
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||  || |||||||||    
T  4635898 cttaatagttttgagatagaaaattccaacatttcttttgctagtgtgcaaagaattgtagaagcctgctgaggttgataaaacaggtgtaacggactga 4635997  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    | ||||||||||||||  || ||||||| ||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||| || |||||    
T  4635998 tatggtgtgatcaagatcttatagtgctggtcagaagtttctgttagcaagacaactatagtggataatctcacgtgaggtgtggggactgaaaatagcc 4636097  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||    
T  4636098 gggtttggtgaaccaggataactctcatgtgttattcctctctctc 4636143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 51 - 246
Target Start/End: Complemental strand, 42732761 - 42732567
Alignment:
Q  51 aagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa 150  Q
    |||||||||| ||||||| ||||||||||||||||| ||||  |||||||||||||||||||||||  || |||||||||| ||||||||||  ||||      
T  42732761 aagaattgtagaagcctgttgaggttgataatacaggggttctggactgatctggtgtgatcaagaccttatagtgctagttagaagtttctactagct- 42732663  T
Q  151 gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  42732662 gaatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcttgtgttattcttctttctc 42732567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 24244267 - 24244050
Alignment:
Q  10 tttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtat-aagcctgctgaggttgataatacagaggttacggactgatctggtgt 108  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||  || |||||||||||||||||||||||||||||  ||||||| |||||    
T  24244267 tttgagatagaaaattccaacctttcttttgctagtg--caaagaattgtaagaatcctgctgaggttgataatacagaggttacaaactgatcgggtgt 24244170  T
Q  109 gatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttgg 208  Q
    ||||||||  |||||||| |  | |||||||||||  | |  ||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  24244169 gatcaagacgttgtagtgttgattagaagtttctgccaac-tgaatactatagtggataatctcacacgaagtgtggggactggaagtagccggatttgg 24244071  T
Q  209 tgaaccaggataactctcctg 229  Q
    |||||||||||||||||||||    
T  24244070 tgaaccaggataactctcctg 24244050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 24290891 - 24290674
Alignment:
Q  10 tttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtat-aagcctgctgaggttgataatacagaggttacggactgatctggtgt 108  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||  || |||||||||||||||||||||||||||||  ||||||| |||||    
T  24290891 tttgagatagaaaattccaacctttcttttgctagtg--caaagaattgtaagaatcctgctgaggttgataatacagaggttacaaactgatcgggtgt 24290794  T
Q  109 gatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttgg 208  Q
    ||||||||  |||||||| |  | |||||||||||  | |  ||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  24290793 gatcaagacgttgtagtgttgattagaagtttctgccaac-tgaatactatagtggataatctcacacgaagtgtggggactggaagtagccggatttgg 24290695  T
Q  209 tgaaccaggataactctcctg 229  Q
    |||||||||||||||||||||    
T  24290694 tgaaccaggataactctcctg 24290674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 13815605 - 13815371
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtat-aagcctgctgaggttgataatacagaggttacggactg 99  Q
    |||||||||||  |||||||||||||||||||||||||||||||||  ||||||||||||  ||||||| ||||||||||||||||  |||||| || ||    
T  13815605 cttaatagttta-agatagaaaattccaacctttcttttgctagtg--caaagaattgtaagaagcctgttgaggttgataatacaagggttacagaatg 13815509  T
Q  100 atctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactggaagta 197  Q
    |||||||||||||||||  || ||||| | || ||||||||||   | |||  ||| ||||||||||||||||||||| || ||||||||||||||||||    
T  13815508 atctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgaatactatagtggataatctcacatgaagtgtggggactggaagta 13815412  T
Q  198 gccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  13815411 gccggatttggtgaaccaggataactctcctgtgttattct 13815371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 48 - 246
Target Start/End: Complemental strand, 33955687 - 33955489
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  33955687 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacgtactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 33955591  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct-tctctc 244  Q
    |||  | | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33955590 caactgcatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattctctctctc 33955491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 48 - 242
Target Start/End: Original strand, 11223376 - 11223568
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  11223376 gcaaagaattgtagaagcctgctgaggttgataatacaggggttacagactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 11223472  T
Q  148 caa-gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttctc 242  Q
    ||  | | |||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||    
T  11223473 cactgtatactataatggataatctcacacgaagtgtggggactggaagtagccgagtttggtgaaccaggataactcttttgtgttattcttctc 11223568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 48 - 246
Target Start/End: Original strand, 20035999 - 20036197
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||||| ||||||||| |||||||||||| || ||||| |||||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  20035999 gcaaagaattgtagaagcctgctaaggttgataatatagtggttatggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 20036095  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct-tctctc 244  Q
    |||  | | ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  20036096 caactgtatactatagtggataatctcacatgatgtgtggggactggaagtagccgggtttggtgaaccaggataactctcctatgttattctctctctc 20036195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 48 - 232
Target Start/End: Original strand, 20834431 - 20834614
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||| | |||||||||||||||||| |||||| ||||||| ||||||||||| |||||||||  || ||||| | || ||||||||||   |     
T  20834431 gcaaagaattggagaagcctgctgaggttgattatacagtggttacgaactgatctggtatgatcaagaccttatagtgttggttagaagtttct---ac 20834527  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgt 232  Q
    |||  | | |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20834528 caactgcatactatagtggataatctcacacggagtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgt 20834614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 51 - 221
Target Start/End: Original strand, 5600580 - 5600749
Alignment:
Q  51 aagaattgtataagcctgctgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagca 149  Q
    |||||| ||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||| | ||| |||||||| ||||||||||||| |||||    
T  5600580 aagaatcgtagaagcctgctgaggttgataatacagagtgtaacggactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagca 5600679  T
Q  150 agaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
     || | |||||||||||||||||||||| ||||||||||||||| |||||| |||| || ||||||||||||    
T  5600680 ggata-ctatagtggataatctcacacgtggtgtggggactggacgtagcc-ggttaggcgaaccaggataa 5600749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 51 - 221
Target Start/End: Original strand, 5610226 - 5610395
Alignment:
Q  51 aagaattgtataagcctgctgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagca 149  Q
    |||||| ||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||| | ||| |||||||| ||||||||||||| |||||    
T  5610226 aagaatcgtagaagcctgctgaggttgataatacagagtgtaacggactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagca 5610325  T
Q  150 agaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
     || | |||||||||||||||||||||| ||||||||||||||| |||||| |||| || ||||||||||||    
T  5610326 ggata-ctatagtggataatctcacacgtggtgtggggactggacgtagcc-ggttaggcgaaccaggataa 5610395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 48 - 204
Target Start/End: Complemental strand, 22118291 - 22118134
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacag-aggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgtta 146  Q
    ||||| ||||||| |||| |||||| ||||||||||||| | || || ||||||||||||||||||||||  || ||||| || ||||||||||||||||    
T  22118291 gcaaataattgtagaagcatgctgatgttgataatacaggatgtaacagactgatctggtgtgatcaagaccttatagtgttattcagaagtttctgtta 22118192  T
Q  147 gcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggt 204  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  22118191 gcaagacaactataatggataatctcacacgaggtgtggggactggaagtagtcgggt 22118134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 71 - 246
Target Start/End: Original strand, 26652642 - 26652816
Alignment:
Q  71 gaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatc 170  Q
    |||||||||||||||  ||||  | |||||| ||||||||||||||  |  |||||||||| |||||||||| |||||  ||| |||||||||||| |||    
T  26652642 gaggttgataatacaagggttctgaactgatatggtgtgatcaagacctaatagtgctagttagaagtttctattagct-gaatactatagtggattatc 26652740  T
Q  171 tcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    |||||||| ||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||| ||||    
T  26652741 tcacacgaagtgtggggactggaagtagtcaggtttggtgaaccagcataactctcctgtgttattcttctttctc 26652816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 71 - 246
Target Start/End: Original strand, 26924227 - 26924401
Alignment:
Q  71 gaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatc 170  Q
    |||||||||||||||  ||||  | |||||| ||||||||||||||  |  |||||||||| |||||||||| |||||  ||| |||||||||||| |||    
T  26924227 gaggttgataatacaagggttctgaactgatatggtgtgatcaagacctaatagtgctagttagaagtttctattagct-gaatactatagtggattatc 26924325  T
Q  171 tcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    |||||||| ||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||| ||||    
T  26924326 tcacacgaagtgtggggactggaagtagtcaggtttggtgaaccagcataactctcctgtgttattcttctttctc 26924401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 51 - 221
Target Start/End: Complemental strand, 31150820 - 31150651
Alignment:
Q  51 aagaattgtataagcctgctgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagca 149  Q
    |||||| ||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||| | ||| |||||||| ||||||||||||| ||||     
T  31150820 aagaatcgtagaagcctgctgaggttgataatacagagtgtaacggactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagc- 31150722  T
Q  150 agaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
    || | |||||||||||||||||||||||  |||||||||||||| |||||| |||| || ||||||||||||    
T  31150721 aggatactatagtggataatctcacacgtagtgtggggactggacgtagcc-ggttaggcgaaccaggataa 31150651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 155 - 246
Target Start/End: Complemental strand, 22448411 - 22448320
Alignment:
Q  155 actatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| |||||||||  ||||||||    
T  22448411 actatagtggataatctcacacgaagtgtggggactggaagtagccggattgggtgaaccaggataactctcttgtgttatttctctctctc 22448320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 155 - 239
Target Start/End: Complemental strand, 37514940 - 37514856
Alignment:
Q  155 actatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattctt 239  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||| |||| |||||||| |||| |||| ||||||||||||    
T  37514940 actatagtggataatctcacacaaggtgtggggactagaagtagccggctttgatgaaccagtataaatctcatgtgttattctt 37514856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 22457722 - 22457656
Alignment:
Q  180 gtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    ||||||||||||||||||||||| || ||||||| ||||||||||| ||||||||||  ||||||||    
T  22457722 gtgtggggactggaagtagccggattgggtgaacaaggataactcttctgtgttatttctctctctc 22457656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 221
Target Start/End: Original strand, 16110881 - 16111058
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgtta 146  Q
    ||||| |||||||||| |||| ||| ||||||||||||||  || || || || |||||||||||||||||  | ||||| || ||  |||||| || ||    
T  16110881 gcaaataattgtataaacctgttgatgttgataatacagaatgtaacagattggtctggtgtgatcaagaacatatagtgttattccaaagtttttgata 16110980  T
Q  147 gcaagaaaactatagtggat---aatctcacacgaggtgtggggactggaagtagccgg-gtttggtgaaccaggataa 221  Q
    | | || | ||||| |||||   |||||||||||| |||| ||||||||||||||||||  |||||||||||| |||||    
T  16110981 gtaggata-ctataatggatggtaatctcacacgaagtgtcgggactggaagtagccggcttttggtgaaccatgataa 16111058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 719018 - 718954
Alignment:
Q  159 tagtggataatctcacacgaggtgtggggactggaagtagccgg-gtttggtgaaccaggataact 223  Q
    ||||||||||||||||||  | |||||||| ||||||||||||| |||||| |||||| |||||||    
T  719018 tagtggataatctcacacttg-tgtggggagtggaagtagccggcgtttggcgaaccacgataact 718954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 727998 - 727934
Alignment:
Q  159 tagtggataatctcacacgaggtgtggggactggaagtagccgg-gtttggtgaaccaggataact 223  Q
    ||||||||||||||||||  | |||||||| ||||||||||||| |||||| |||||| |||||||    
T  727998 tagtggataatctcacacttg-tgtggggagtggaagtagccggcgtttggcgaaccacgataact 727934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 6331735 - 6331671
Alignment:
Q  159 tagtggataatctcacacgaggtgtggggactggaagtagccgg-gtttggtgaaccaggataact 223  Q
    ||||||||||||||||||  | |||||||| ||||||||||||| |||||| |||||| |||||||    
T  6331735 tagtggataatctcacacttg-tgtggggagtggaagtagccggcgtttggcgaaccacgataact 6331671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 94666 - 94420
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  94666 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 94567  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  94566 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 94467  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct-tctctctc 246  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||    
T  94466 gggtttagtgaaccaggataactctcctgtgttattctctctctctc 94420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 104107 - 103861
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  104107 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 104008  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  104007 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaattagcc 103908  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct-tctctctc 246  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  103907 gggtttggtgaaccaggataactctcctgtgttattctctctctctc 103861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 82272 - 82336
Alignment:
Q  159 tagtggataatctcacacgaggtgtggggactggaagtagccgg-gtttggtgaaccaggataact 223  Q
    ||||||||||||||||||  | |||||||| ||||||||||||| |||||| |||||| |||||||    
T  82272 tagtggataatctcacacttg-tgtggggagtggaagtagccggcgtttggcgaaccacgataact 82336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 23895851 - 23895606
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||    
T  23895851 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacaggtgtaacggactga 23895752  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23895751 tctggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 23895652  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  23895651 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 23895606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 18420504 - 18420749
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  || |||||||||    
T  18420504 cttaatagtttggagatagaaaattccaacctttcttttgctattgtgcaaagaattgtataagcctgctgaggttgataatacaggtgtaacggactga 18420603  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||  |  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  18420604 tctggtgtgatcaagatttgttagtgctagtcagaagtttctgttagcaagaaaactatagtgtataatctcacacgaggtgtcgggactggaagtagcc 18420703  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||    
T  18420704 gggttttgtgaaccaggataactatcctgtgttattcttctctctc 18420749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 48 - 246
Target Start/End: Original strand, 22066293 - 22066491
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||  || ||||| | || ||||||||||   |     
T  22066293 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacggactgatctagtgtgatcaagaccttatagtgttggttagaagtttct---ac 22066389  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct-tctctc 244  Q
    |||  | | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22066390 caactgcatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattctctctctc 22066489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 50 - 241
Target Start/End: Original strand, 14102308 - 14102500
Alignment:
Q  50 aaagaattgtataagcctgctgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagc 148  Q
    ||||||||||| ||| ||||||||||| ||||||||| | || || | |||||||| |||||||||||  ||  ||||||||||| ||||||||||||||    
T  14102308 aaagaattgtagaagtctgctgaggttaataatacagggtgtaacaggctgatctgttgtgatcaagaccttacagtgctagtcaaaagtttctgttagc 14102407  T
Q  149 aagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttct 241  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||    
T  14102408 aagacaactatagtggataatctcacaagaggtgtggggactggaagtagccgggtttggtgaaccaggataattcttcagtgttattcttct 14102500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 48 - 234
Target Start/End: Original strand, 23884492 - 23884677
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  23884492 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 23884588  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgtta 234  Q
    |||  | | ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23884589 caactgcatactatagtggacaatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgtta 23884677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 49 - 246
Target Start/End: Complemental strand, 17512408 - 17512213
Alignment:
Q  49 caaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagc 148  Q
    |||||||||||| ||||||||| ||||||||||||||| |||||| ||||||||| ||||||||||||  || ||||| | || ||||||||||   | |    
T  17512408 caaagaattgtagaagcctgctaaggttgataatacag-ggttacagactgatctagtgtgatcaagactttatagtgttggttagaagtttct---acc 17512313  T
Q  149 aa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    ||  | | ||||||||||||||||||||| || |||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||    
T  17512312 aactgtatactatagtggataatctcacaagaagtgtggggactgaaagtagccgagtttggtgaaccaggataactcttctgtgttattcttctttctc 17512213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 70 - 236
Target Start/End: Complemental strand, 10259945 - 10259779
Alignment:
Q  70 tgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataa 168  Q
    ||||||| ||||||||| | || |||||||||||||||||||||||||| || ||||||||||||||||||||| |||||| || | |||||||||| ||    
T  10259945 tgaggtttataatacagggtgtaacggactgatctggtgtgatcaagaatttatagtgctagtcagaagtttctcttagcaggata-ctatagtggagaa 10259847  T
Q  169 tctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttatt 236  Q
    || ||||||| ||||| |||||||||||||| || ||||||||||||| |||| ||||||||||||||    
T  10259846 tcccacacgaagtgtgaggactggaagtagctggatttggtgaaccagaataattctcctgtgttatt 10259779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 96 - 241
Target Start/End: Original strand, 12173469 - 12173613
Alignment:
Q  96 actgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaag 195  Q
    |||||||||||||||||||||| || | |||||||||| ||||||||||||||| || | |||||||||||||||| |||| |||||||||||||| |||    
T  12173469 actgatctggtgtgatcaagaatttatggtgctagtcataagtttctgttagcatgata-ctatagtggataatcttacacaaggtgtggggactgaaag 12173567  T
Q  196 tagccgggtttggtgaaccaggataactctcctgtgttattcttct 241  Q
    |||||| ||||||||||| | ||||| ||||  |||||||||||||    
T  12173568 tagccgagtttggtgaactatgataaatctcaggtgttattcttct 12173613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 95 - 241
Target Start/End: Complemental strand, 11421591 - 11421446
Alignment:
Q  95 gactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaa 194  Q
    ||||||||||||||||||||||  || ||||| ||||||||| ||| ||||| || || | |||||||||||||||||||||||||||||||||||||||    
T  11421591 gactgatctggtgtgatcaagatcttatagtgttagtcagaattttttgttaacatgata-ctatagtggataatctcacacgaggtgtggggactggaa 11421493  T
Q  195 gtagccgggtttggtgaaccaggataactctcctgtgttattcttct 241  Q
    |||||||| |||| ||||| ||||||| | || ||||||||| ||||    
T  11421492 gtagccggatttgatgaactaggataattatcttgtgttattgttct 11421446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 95 - 213
Target Start/End: Complemental strand, 23110359 - 23110242
Alignment:
Q  95 gactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaa 194  Q
    |||| ||||||||||||||||||  | |||||||||||||||||||||||||||  ||| ||||||||||||||||| ||||| ||||||||||||||||    
T  23110359 gacttatctggtgtgatcaagaacatatagtgctagtcagaagtttctgttagcc-gaatactatagtggataatctaacacggggtgtggggactggaa 23110261  T
Q  195 gtagccgggtttggtgaac 213  Q
    ||||| || ||| ||||||    
T  23110260 gtagctggttttcgtgaac 23110242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 177
Target Start/End: Original strand, 12415064 - 12415190
Alignment:
Q  51 aagaattgtataagcctgctgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagca 149  Q
    |||||| ||| |||||||||  |||| ||||||||||| || |||||||||||||||||||||||   ||| |||||||| | ||||||||||| ||       
T  12415064 aagaatcgtagaagcctgctatggttaataatacagagtgtaacggactgatctggtgtgatcaacttattatagtgctattaagaagtttctgata-ag 12415162  T
Q  150 agaaaactatagtggataatctcacacg 177  Q
    || | |||||| ||||||||||||||||    
T  12415163 aggatactataatggataatctcacacg 12415190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 13218359 - 13218453
Alignment:
Q  55 attgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagca 149  Q
    ||||||||||| || |||||||||||||| || | || || |||| |||||||||||||| |  || |||| ||||||| |||||||||||||||    
T  13218359 attgtataagcttgttgaggttgataatatagtgattccgaactggtctggtgtgatcaataccttatagttctagtcaaaagtttctgttagca 13218453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 3486 - 3726
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3486 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacagactga 3585  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3586 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagacaactatagtggataatctcacacgaggtgtggggactggaagtagcc 3685  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttct 241  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  3686 gggtttggtgaaccagaataattctcctgtgttattcttct 3726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 7789313 - 7789073
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7789313 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacagactga 7789214  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7789213 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagacaactatagtggataatctcacacgaggtgtggggactggaagtagcc 7789114  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttct 241  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  7789113 gggtttggtgaaccagaataattctcctgtgttattcttct 7789073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 20714022 - 20714267
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  || || ||||||    
T  20714022 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtagaagcctgctgaggttgataatacaggtgtaacagactga 20714121  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||  || ||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  20714122 tctggtgtgatcaagatcttatagtgctagtcagaagtttctgttagcaagacaactataatggataatgtcacacgaggtgtggggactggaagtagcc 20714221  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  20714222 gggtttggtgaaccaggataactctcatgtgttattcttctctctc 20714267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 18883384 - 18883163
Alignment:
Q  10 tttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtat-aagcctgctgaggttgataatacagaggttacggactgatctggtgt 108  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||  |||||||||||||||||||||||||||| |||| |||||||||||||    
T  18883384 tttgagatagaaaattccaacctttcttttgctagtg--caaagaattgtaagaagcctgctgaggttgataatacagagggtacgaactgatctggtgt 18883287  T
Q  109 gatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggttt 206  Q
    ||||||||  || ||||| | || |||| ||||   || |||  ||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  18883286 gatcaagactttatagtgttggttagaattttc---taccaactgaatactatagtggataatctcacacgaagtgtggggactggaagtagccggattt 18883190  T
Q  207 ggtgaaccaggataactctcctgtgtt 233  Q
    |||||||||||||||||||||||||||    
T  18883189 ggtgaaccaggataactctcctgtgtt 18883163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 25051295 - 25051063
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtat-aagcctgctgaggttgataatacagaggttacggactg 99  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||  |||||||||||||||||||||||||||||||| |||||    
T  25051295 cttaatagttt-gagatagaaaattccaacctttcttttgctagtg--caaagaattgtaagaagcctgctgaggttgataatacagaggttacagactg 25051199  T
Q  100 atctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactggaagta 197  Q
    ||||||||||||||||| ||| ||||| | || |||||||||   || |||  ||| |||||||||||||||||||||||| ||||||||||||||||||    
T  25051198 atctggtgtgatcaagacattatagtgttggttagaagtttc---taccaactgaatactatagtggataatctcacacgaagtgtggggactggaagta 25051102  T
Q  198 gccgggtttggtgaaccaggataactctcctgtgttatt 236  Q
    ||| | || ||||||||| |||||||||| |||||||||    
T  25051101 gccagattgggtgaaccaagataactctcttgtgttatt 25051063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 48 - 246
Target Start/End: Complemental strand, 42712365 - 42712168
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  42712365 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 42712269  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttctctct 245  Q
    |||  | | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  42712268 caactgcatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttctttct 42712169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 25037258 - 25037026
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtat-aagcctgctgaggttgataatacagaggttacggactg 99  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||  |||||||||||||||||||||||||||||||| |||||    
T  25037258 cttaatagttt-gagatagaaaattccaacctttcttttgctagtg--caaagaattgtaagaagcctgctgaggttgataatacagaggttacagactg 25037162  T
Q  100 atctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactggaagta 197  Q
    |||||||||||||||||  || ||||| | || |||||||||   || |||  ||| |||||||||||||||||||||||| ||||||||||||||||||    
T  25037161 atctggtgtgatcaagactttatagtgttggttagaagtttc---taccaactgaatactatagtggataatctcacacgaagtgtggggactggaagta 25037065  T
Q  198 gccgggtttggtgaaccaggataactctcctgtgttatt 236  Q
    ||| | || ||||||||| |||||||||| |||||||||    
T  25037064 gccagattgggtgaaccaagataactctcttgtgttatt 25037026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 18232890 - 18233107
Alignment:
Q  10 tttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtat-aagcctgctgaggttgataatacagaggttacggactgatctggtgt 108  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||  || |||||||||||||||||||||||||||||  ||||||| |||||    
T  18232890 tttgagatagaaaattccaacctttcttttgctagtg--caaagaattgtaagaatcctgctgaggttgataatacagaggttacaaactgatcgggtgt 18232987  T
Q  109 gatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttgg 208  Q
    ||||||||  |||||||| |  | |||||||||||  | |  ||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  18232988 gatcaagacgttgtagtgttgattagaagtttctgccaac-tgaatactatagtggataatctcacacgaagtgtggggactggaagtagccggatttgg 18233086  T
Q  209 tgaaccaggataactctcctg 229  Q
    |||||||||||||||||||||    
T  18233087 tgaaccaggataactctcctg 18233107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 18242341 - 18242558
Alignment:
Q  10 tttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtat-aagcctgctgaggttgataatacagaggttacggactgatctggtgt 108  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||  || |||||||||||||||||||||||||||||  ||||||| |||||    
T  18242341 tttgagatagaaaattccaacctttcttttgctagtg--caaagaattgtaagaatcctgctgaggttgataatacagaggttacaaactgatcgggtgt 18242438  T
Q  109 gatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttgg 208  Q
    ||||||||  |||||||| |  | |||||||||||  | |  ||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  18242439 gatcaagacgttgtagtgttgattagaagtttctgccaac-tgaatactatagtggataatctcacacgaagtgtggggactggaagtagccggatttgg 18242537  T
Q  209 tgaaccaggataactctcctg 229  Q
    |||||||||||||||||||||    
T  18242538 tgaaccaggataactctcctg 18242558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 18143661 - 18143427
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtat-aagcctgctgaggttgataatacagaggttacggactg 99  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||  |||||| |||||||||||||||||  |||||| |||||    
T  18143661 cttaatagttt-gagatagaaaattccaacctttcttttgctagtg--caaagaattgtaagaagcctactgaggttgataatacaagggttacagactg 18143565  T
Q  100 atctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactggaagta 197  Q
    |||||||||||||||||  || ||||| | || ||||||||   ||| |||  |||  ||||||||||||||||||||||| ||||||||||||||||||    
T  18143564 atctggtgtgatcaagaccttatagtgttggttagaagttt---ttaccaactgaatgctatagtggataatctcacacgaagtgtggggactggaagta 18143468  T
Q  198 gccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||| |||||||||||| ||||||||||||||||||||||    
T  18143467 gccggatttggtgaaccaagataactctcctgtgttattct 18143427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 18251792 - 18252009
Alignment:
Q  10 tttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtat-aagcctgctgaggttgataatacagaggttacggactgatctggtgt 108  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||  || |||||||||||||||||||||||||||||  ||||||| |||||    
T  18251792 tttgagatagaaaattccaacctttcttttgctagtg--caaagaattgtaagaatcctgctgaggttgataatacagaggttacaaactgatcgggtgt 18251889  T
Q  109 gatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttgg 208  Q
    ||||||||  || ||||| | || |||||||||||  | |  ||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  18251890 gatcaagacgttatagtgttggttagaagtttctgccaac-tgaatactatagtggataatctcacacgaagtgtggggactggaagtagccggatttgg 18251988  T
Q  209 tgaaccaggataactctcctg 229  Q
    |||| ||||||||||||||||    
T  18251989 tgaatcaggataactctcctg 18252009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 49 - 246
Target Start/End: Original strand, 12925355 - 12925552
Alignment:
Q  49 caaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagc 148  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||  || ||||| | || ||||||||||   | |    
T  12925355 caaagaattgtagaagcctgctgaggttgataatacagtggttacggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---acc 12925451  T
Q  149 aa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct-tctctct 245  Q
    ||  | | |||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||    
T  12925452 aactgcatactatagtggataatctcacacgaagtgtggggactggaagtagtcgggtttcgtgaaccaggataactctcctgtgttattctctctctct 12925551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 48 - 246
Target Start/End: Original strand, 20030179 - 20030376
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||  || ||||| | || |||||||| |   |     
T  20030179 gcaaagaattgtagaagcctgctgaggttgataatacagggattacggactgatctggtgtgatcaagaccttatagtgttggttagaagtttat---ac 20030275  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttctctct 245  Q
    |||  | | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  20030276 caactgtatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcttgtgttattcttctttct 20030375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 48 - 246
Target Start/End: Original strand, 20044818 - 20045015
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  20044818 gcaaagaattgtagaagcctgctgaggttgataatacaggggttacggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 20044914  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttctctct 245  Q
    |||  | | ||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  20044915 caactgtatactatcgtggataatctcacacgaagtgtggggactggatgtagccgggtttggtgaaccaggataactctcatgtgttattcttctttct 20045014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 51 - 236
Target Start/End: Complemental strand, 31575595 - 31575411
Alignment:
Q  51 aagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa 150  Q
    |||||||||| |||| |||||||||||||||||||| ||||  |||||||| ||||||||||||||  || |||||||||| ||||||||||  ||||      
T  31575595 aagaattgtagaagcttgctgaggttgataatacaggggttctggactgatttggtgtgatcaagaccttatagtgctagttagaagtttctactagct- 31575497  T
Q  151 gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttatt 236  Q
    ||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  31575496 gaatactatagtggataatctcacacgaagtgtggggactggaagtagccggatttggtgaaccaggataactctcttgtgttatt 31575411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 48 - 246
Target Start/End: Original strand, 12767631 - 12767830
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||  || ||||| | || |||||||||   ||     
T  12767631 gcaaagaattgtagaagcctgctgaggttgataatacaggggttacggactgatctggtgtgatcaagaccttatagtgttggttagaagtttc---tac 12767727  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggac--tggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttctct 243  Q
    |||  ||| ||||||||||||||||||||||||  |||||||||  |||||||| ||||| ||||||||||||||||||||||||||||||||||||| |    
T  12767728 caactgaatactatagtggataatctcacacgaaatgtggggactgtggaagtaaccgggattggtgaaccaggataactctcctgtgttattcttcttt 12767827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 4843956 - 4843720
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtat-aagcctgctgaggttgataatacaga--ggttacggac 97  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||  ||||||| |||||||||||||| | |  |||||| |||    
T  4843956 cttaatagttt-gagatagaaaattccaacctttcttttgctagtg--caaagaattgtaagaagcctgatgaggttgataatatacaagggttacagac 4843860  T
Q  98 tgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactggaag 195  Q
    |||||||||||||||||||  || ||||  | || |||| |||||   | |||  ||| |||||||||||||||||||||||| ||||||||||||||||    
T  4843859 tgatctggtgtgatcaagaccttatagtcttggttagaaatttct---accaactgaatactatagtggataatctcacacgaagtgtggggactggaag 4843763  T
Q  196 tagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||||| ||| ||||||||||||||||||||| |||||||||    
T  4843762 tagccggatttagtgaaccaggataactctcctttgttattct 4843720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 94 - 246
Target Start/End: Complemental strand, 33601914 - 33601763
Alignment:
Q  94 ggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactgga 193  Q
    |||||||||| ||||||||||||  || ||||| | ||||||||||||||| | |  |||||||||||||||||||||||||||| ||||||||||||||    
T  33601914 ggactgatctagtgtgatcaagaccttatagtgttggtcagaagtttctgtcaact-gaaaactatagtggataatctcacacgaagtgtggggactgga 33601816  T
Q  194 agtagccgggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    ||||||||| || |||||||||||||||||||||||||||||| |||||||||    
T  33601815 agtagccggattgggtgaaccaggataactctcctgtgttatttttctctctc 33601763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 88 - 246
Target Start/End: Original strand, 12915499 - 12915657
Alignment:
Q  88 ggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtgg 185  Q
    |||||||||||||||||||||||||||||  || ||||| | || ||||||||||   | |||  | | |||||||||||||||||||||||| ||||||    
T  12915499 ggttacggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgcatactatagtggataatctcacacgaagtgtgg 12915595  T
Q  186 ggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct-tctctctc 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12915596 ggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattctctctctctc 12915657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 94 - 246
Target Start/End: Complemental strand, 33592275 - 33592124
Alignment:
Q  94 ggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactgga 193  Q
    |||||||||| ||||||||||||  || ||||| | ||||||||||||||| | |  |||||||||||||||||||||||||||| ||||||||||||||    
T  33592275 ggactgatctagtgtgatcaagaccttatagtgttggtcagaagtttctgtcaact-gaaaactatagtggataatctcacacgaagtgtggggactgga 33592177  T
Q  194 agtagccgggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    ||||||||| || ||||||||||||||||||||||||||||||  ||||||||    
T  33592176 agtagccggattgggtgaaccaggataactctcctgtgttatttctctctctc 33592124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 49 - 234
Target Start/End: Complemental strand, 24096262 - 24096077
Alignment:
Q  49 caaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagc 148  Q
    |||||||||| | |||  || ||||||||||||||||  |   | |||||||| |||||| |||||||| ||||||||||||||| |||||| |||||||    
T  24096262 caaagaattgaagaagtttgttgaggttgataatacaaggaaaatggactgatatggtgtaatcaagaacttgtagtgctagtcaaaagtttatgttagc 24096163  T
Q  149 aagaaaactatagtggataatctcacacgaggtgt-ggggactggaagtagccgggtttggtgaaccaggataactctcctgtgtta 234  Q
    ||| | ||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||| |||| ||||||||||||    
T  24096162 aag-atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttggtgaaccagaataaatctcctgtgtta 24096077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 48 - 235
Target Start/End: Original strand, 15833950 - 15834137
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgtta 146  Q
    ||||||||||||| || ||| |||| ||||||||||||| | || ||| ||| ||||||| || ||||||| || |||||||||||||||||||| ||||    
T  15833950 gcaaagaattgtagaaacctactgatgttgataatacagggagtaacgaacttatctggtatggtcaagaacttatagtgctagtcagaagtttcagtta 15834049  T
Q  147 gcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttat 235  Q
    ||| || | ||||| ||||||||||||||||||||||| |||||| |||||||||| |||||||||||| ||||| |||| ||||||||    
T  15834050 gcatgata-ctataatggataatctcacacgaggtgtgtggactgaaagtagccggatttggtgaaccaagataaatctcttgtgttat 15834137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 89 - 226
Target Start/End: Original strand, 24634009 - 24634145
Alignment:
Q  89 gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtgggga 188  Q
    |||| |||||||||||||||||||||||  || |||||||||| ||||||||||  ||||  ||| ||||||||||||||| |||||||| |||||||||    
T  24634009 gttatggactgatctggtgtgatcaagaccttatagtgctagttagaagtttctactagct-gaatactatagtggataatatcacacgaagtgtgggga 24634107  T
Q  189 ctggaagtagccgggtttggtgaaccaggataactctc 226  Q
    |||||||||| ||||||||  |||||||||||||||||    
T  24634108 ctggaagtagtcgggtttgaggaaccaggataactctc 24634145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 20714417 - 20714484
Alignment:
Q  171 tcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20714417 tcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcatgtgttattct 20714484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 211
Target Start/End: Complemental strand, 42896290 - 42896174
Alignment:
Q  94 ggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactgga 193  Q
    |||||||||||||||||||||||  || ||||| | || |||||||||| | | |  |||| ||||||||||||||||||||||| |||||| |||||||    
T  42896290 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctatcaact-gaaatctatagtggataatctcacacgaagtgtggagactgga 42896192  T
Q  194 agtagccgggtttggtga 211  Q
    ||||||||| || |||||    
T  42896191 agtagccggattgggtga 42896174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 26194106 - 26194048
Alignment:
Q  175 acgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgtt 233  Q
    |||| ||||||||||| |||||||  ||||||| |||||||||||||||||| ||||||    
T  26194106 acgaagtgtggggactagaagtagttgggtttgatgaaccaggataactctcatgtgtt 26194048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 31058 - 30813
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||    
T  31058 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacaggtgttactgactga 30959  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30958 tctggtgtgatcaaaatattgtagtgttagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 30859  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  30858 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 30813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 9998 - 10239
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    ||||||||||| |||||||||||||| ||| ||| |||| ||||||  |||||||||||| ||||||  |||||||||||||||||  || || ||||||    
T  9998 cttaatagttt-gagatagaaaattctaacatttatttttctagtg--caaagaattgtagaagcctattgaggttgataatacaggtgtaacagactga 10094  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||||| |||  || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||    
T  10095 tctggtgtgatctagaccttatagtgctagtcagaagtttctgttagcaagacaactatagtggataatctcacacggggtgtggggactggaa-tagcc 10193  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    | ||||||||||||| |||||||||| ||||||||||  |||||||    
T  10194 gtgtttggtgaaccaagataactctcatgtgttattcccctctctc 10239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 408281 - 408526
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  |||||||||| |    
T  408281 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgaagaggttgataatacaggtgttacggactaa 408380  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  408381 tctggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagac 408480  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  408481 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 408526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 7592959 - 7593204
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||    
T  7592959 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgatgaggttgataatacaggtgttacggactga 7593058  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7593059 tctggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaagaaaactataatggataatctcacacgaggtgtggggactggaagtagcc 7593158  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
     ||||||||||||||||||||||||| |||||||||||||||||||    
T  7593159 aggtttggtgaaccaggataactctcttgtgttattcttctctctc 7593204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 15174493 - 15174738
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  || |||||||||    
T  15174493 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgtaacggactga 15174592  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15174593 tctggtgtgatcaagatcttgtagtgctagtcagaagtttttgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 15174692  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  15174693 gggtttggtgaaccaggataaatctcctgtgttattcttctctctc 15174738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 11634554 - 11634337
Alignment:
Q  10 tttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtat-aagcctgctgaggttgataatacagaggttacggactgatctggtgt 108  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||||||||||||||||||  ||||||| |||||    
T  11634554 tttgagatagaaaattccaacctttcttttgctagtg--caaagaattgtaagaagcctgctgaggttgataatacagaggttacaaactgatcgggtgt 11634457  T
Q  109 gatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttgg 208  Q
    ||||||||  || ||||| | || |||||||||||  | |  ||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  11634456 gatcaagacgttatagtgttggttagaagtttctgccaac-tgaatactatagtggataatctcacacgaagtgtggggactggaagtagccggatttgg 11634358  T
Q  209 tgaaccaggataactctcctg 229  Q
    |||||||||||||||||||||    
T  11634357 tgaaccaggataactctcctg 11634337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 48 - 238
Target Start/End: Complemental strand, 14634965 - 14634776
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||  || ||||| | || ||||||||||   ||    
T  14634965 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccag 14634866  T
Q  148 caagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |  | | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14634865 ct-gcatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 14634776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 48 - 246
Target Start/End: Complemental strand, 14644665 - 14644467
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  14644665 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 14644569  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct-tctctc 244  Q
    |||  | | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14644568 caactgcatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattctctctctc 14644469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 48 - 238
Target Start/End: Complemental strand, 33292364 - 33292175
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  33292364 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 33292268  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||  | | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33292267 caactgcatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 33292175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 48 - 246
Target Start/End: Complemental strand, 15947560 - 15947362
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  15947560 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 15947464  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct-tctctc 244  Q
    |||  | | |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15947463 caactgcatactatagtggataatctcacacgaagtgtggtgactggaagtagccgggtttggtgaaccaggataactctcctgtgttattctctctctc 15947364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 49 - 246
Target Start/End: Original strand, 32817997 - 32818193
Alignment:
Q  49 caaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagc 148  Q
    |||| ||||||| |||||||| |||||||||||||||| |||||| ||||||||||||||||||||||  || ||||| | || ||||||||||   | |    
T  32817997 caaaaaattgtagaagcctgcggaggttgataatacaggggttacagactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---acc 32818093  T
Q  149 aa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    ||  ||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32818094 aactgaatactatagtggataatctcacacgaagtgtggggaccggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttctttctc 32818193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 48 - 246
Target Start/End: Original strand, 9736946 - 9737143
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||||| ||||||||||||||||||||||||| || ||| |||||||||||||||||||||   || ||||| | || ||||||||||   |     
T  9736946 gcaaagaattgtagaagcctgctgaggttgataatacaggggctacagactgatctggtgtgatcaaggccttatagtgttggttagaagtttctacaaa 9737045  T
Q  148 caagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    |  ||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  9737046 ct-gaatactataatggataatctcacacgaagtgtggggactggaagtagccgggtttagtgaaccaggataactctcctgtgttattcttctttctc 9737143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 50 - 236
Target Start/End: Complemental strand, 19352775 - 19352589
Alignment:
Q  50 aaagaattgtataagcctgctgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagc 148  Q
    |||||| |||| ||||||| ||||||| ||||||||| | || |||||  ||||||||||||||| ||| || |||| | ||||||||||||||||||||    
T  19352775 aaagaagtgtagaagcctgatgaggttcataatacagggtgtaacggaaagatctggtgtgatcaggaatttatagtacaagtcagaagtttctgttagc 19352676  T
Q  149 aagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttatt 236  Q
    | || | ||||||||||||||||||||||| ||||| ||||||||||||||||  ||||||||||||| ||||||||||||| |||||    
T  19352675 aggaga-ctatagtggataatctcacacgaagtgtgaggactggaagtagccgaatttggtgaaccagtataactctcctgtattatt 19352589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 94 - 246
Target Start/End: Original strand, 13874432 - 13874582
Alignment:
Q  94 ggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactg 191  Q
    |||||||||||||||||||||||  || ||||| | || ||||||||||   | |||  |||||||||||||||||||||||||||| ||||||||||||    
T  13874432 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgaaaactatagtggataatctcacacgaagtgtggggactg 13874528  T
Q  192 gaagtagccgggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    ||||||| ||| || ||||||||||||||||||||||||||||||  ||||||||    
T  13874529 gaagtag-cggattgggtgaaccaggataactctcctgtgttatttctctctctc 13874582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 48710121 - 48710004
Alignment:
Q  122 tagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtgggg-actggaagtagccgggtttggtgaaccaggata 220  Q
    |||||||||| ||||||||||  ||||  ||| |||||||||||||||||||||||| |||||||| |||||||||| ||| |||||||||||||| |||    
T  48710121 tagtgctagttagaagtttctactagct-gaatactatagtggataatctcacacgaagtgtgggggactggaagtatccgagtttggtgaaccagaata 48710023  T
Q  221 actctcctgtgttattctt 239  Q
     ||||||||||||||||||    
T  48710022 tctctcctgtgttattctt 48710004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 54 - 221
Target Start/End: Complemental strand, 4306739 - 4306573
Alignment:
Q  54 aattgtataagcctgctgaggttgataatacagaggtta--cggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaag 151  Q
    ||||||| ||| |||||||||||||||||||||||  ||  |||||||||||||||||||||| ||    |||||||| ||| ||||||||| |||   |    
T  4306739 aattgtagaagtctgctgaggttgataatacagagtgtaatcggactgatctggtgtgatcaacaa--catagtgctattcataagtttctgatag-ttg 4306643  T
Q  152 aaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
     | |||||||| || |||||||| ||| ||||||| |||||||||||| || |||||||||| |||||||    
T  4306642 gatactatagtagaaaatctcactcgaagtgtgggaactggaagtagctggctttggtgaactaggataa 4306573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 48711469 - 48711401
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaaga 116  Q
    |||||||||| || ||||||| ||||||||||||||||   ||| || |||||| ||||||||||||||    
T  48711469 gcaaagaattatagaagcctgttgaggttgataatacatgtgttccgaactgatatggtgtgatcaaga 48711401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 607218 - 607282
Alignment:
Q  159 tagtggataatctcacacgaggtgtggggactggaagtagccgg-gtttggtgaaccaggataact 223  Q
    ||||||||||||||||||  | |||||||| ||||||||||||| |||||| |||||| |||||||    
T  607218 tagtggataatctcacacttg-tgtggggagtggaagtagccggcgtttggcgaaccacgataact 607282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 616313 - 616377
Alignment:
Q  159 tagtggataatctcacacgaggtgtggggactggaagtagccgg-gtttggtgaaccaggataact 223  Q
    ||||||||||||||||||  | |||||||| ||||||||||||| |||||| |||||| |||||||    
T  616313 tagtggataatctcacacttg-tgtggggagtggaagtagccggcgtttggcgaaccacgataact 616377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 246
Target Start/End: Original strand, 13951987 - 13952074
Alignment:
Q  159 tagtggataatctcacacgaggtgtggggactggaagtagccgg-gtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    ||||||||||||||||||  | |||||||| ||||||||||||| |||||  |||| | ||||||| || ||||| ||| |||||||||    
T  13951987 tagtggataatctcacacttg-tgtggggagtggaagtagccggcgtttgacgaacaacgataactttcgtgtgtcatttttctctctc 13952074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 31710701 - 31710456
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||  || |||||||||    
T  31710701 cttactagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtagaagtctgctgaggttgataatacaggtgtaacggactga 31710602  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||  || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31710601 tctggtgtgatcaagatcttatagtgctagtcagaagtttctgttagcaagacaactatagtggataatctcacacgaggtgtggggactggaagtagcc 31710502  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||    
T  31710501 gggtttggtgaacaaggataactctcatgtgttattcttctctctc 31710456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 2 - 246
Target Start/End: Complemental strand, 24022976 - 24022732
Alignment:
Q  2 ttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgat 101  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||  || ||||||||||    
T  24022976 ttaatagttttgagatagaaaatttcaaccttccttttgctagtgtgcaaagaattgtagaagcctgttgaggttgataatacaggtgtaacggactgat 24022877  T
Q  102 ctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccg 201  Q
    |||||||||||||||  || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||    
T  24022876 ctggtgtgatcaagatcttatagtgctagtcagaagtttctgttagcaagacaactatagtggataatctcacacgaggtgtgggaattggaagtagccg 24022777  T
Q  202 ggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    |||||||||||| |||||||||||||  |||||||||||||||||    
T  24022776 ggtttggtgaacgaggataactctccaatgttattcttctctctc 24022732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 14273158 - 14273397
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    |||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||  || || ||||||    
T  14273158 cttaatagttta-agatagaaaattccaacatttcttttgctagtgtgcaaagaattgtagaagcctgctgaggttgataatataggtgtaacagactga 14273256  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    | ||||||||| ||||  || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||    
T  14273257 tatggtgtgattaagatcttatagtgctagtcagaagtttctgttagcaagacaactatagtggataatctcacacgaggtgtggagactgaaagtagcc 14273356  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattcttct 241  Q
    ||||||||||||||||||||| |||| ||||||||||||||    
T  14273357 gggtttggtgaaccaggataattctcgtgtgttattcttct 14273397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 48 - 239
Target Start/End: Original strand, 35877516 - 35877706
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  35877516 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacgaactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 35877612  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattctt 239  Q
    |||  | | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35877613 caactgcatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcctatgttattctt 35877706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 48 - 239
Target Start/End: Original strand, 35885005 - 35885195
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  35885005 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacgaactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 35885101  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattctt 239  Q
    |||  | | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35885102 caactgcatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcctatgttattctt 35885195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 48 - 239
Target Start/End: Original strand, 36724718 - 36724908
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  36724718 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacgaactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 36724814  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattctt 239  Q
    |||  | | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36724815 caactgcatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcctatgttattctt 36724908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 48 - 246
Target Start/End: Original strand, 3396923 - 3397121
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || ||| ||||||||||||||||||||  |||||||||||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  3396923 gcaaagaattttagaagtctgctgaggttgataatacaatggttacggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 3397019  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct-tctctc 244  Q
    |||  | | |||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||| |||||||||||||||||| ||| ||||||    
T  3397020 caactgtatactatagtggataatctcacacgaagtgtggggactagaagtagctgggtttggtgaaccatgataactctcctgtgttactctctctctc 3397119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 51 - 221
Target Start/End: Original strand, 1800493 - 1800662
Alignment:
Q  51 aagaattgtataagcctgctgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagca 149  Q
    |||||| ||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||| | ||| |||||||| ||||||||||||| ||||     
T  1800493 aagaatcgtagaagcctgctgaggttgataatacagagtgtaacggactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagc- 1800591  T
Q  150 agaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
    || | |||||||||||||||||||||||  |||||||||||||| |||||| |||| || ||||||||||||    
T  1800592 aggatactatagtggataatctcacacgtagtgtggggactggacgtagcc-ggttaggcgaaccaggataa 1800662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 51 - 221
Target Start/End: Original strand, 22632402 - 22632571
Alignment:
Q  51 aagaattgtataagcctgctgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagca 149  Q
    |||||| ||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||| | ||| ||||| |||||||||||||||| ||||     
T  22632402 aagaatcgtagaagcctgctgaggttgataatacagagtgtaacggactgatctggtgtgatcaacatattatagtgttagtcagaagtttctgatagc- 22632500  T
Q  150 agaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
    || | |||||||||||||||||||||||  |||||||||||||| |||||| |||| || ||||||||||||    
T  22632501 aggatactatagtggataatctcacacgtagtgtggggactggacgtagcc-ggttaggcgaaccaggataa 22632571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 51 - 221
Target Start/End: Original strand, 1790999 - 1791164
Alignment:
Q  51 aagaattgtataagcctgctgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagca 149  Q
    |||||| ||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||| | ||| |||||||| |||||||||||||     |    
T  1790999 aagaatcgtagaagcctgctgaggttgataatacagagtgtaacggactgatctggtgtgatcaacatattatagtgctattcagaagtttctg-----a 1791093  T
Q  150 agaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
     | | |||||||||||||||||||||||  |||||||||||||| |||||| |||| || ||||||||||||    
T  1791094 tggatactatagtggataatctcacacgtagtgtggggactggacgtagcc-ggttaggcgaaccaggataa 1791164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 240
Target Start/End: Original strand, 18578707 - 18578877
Alignment:
Q  70 tgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataa 168  Q
    ||||||||||||||||| | || || || || |||||||| |||||||| || |||| ||||||| ||||||||||||| | || |  ||  ||| ||||    
T  18578707 tgaggttgataatacagggtgtaacagattggtctggtgttatcaagaacttatagtcctagtcaaaagtttctgttaggaggatat-tactgtgaataa 18578805  T
Q  169 tctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttc 240  Q
    |||||||| |||||||||||||| |||||| |||||||| |||||  |||||| |||| |||||||||||||    
T  18578806 tctcacacaaggtgtggggactgaaagtagtcgggtttgatgaacatggataaatctcatgtgttattcttc 18578877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 29911278 - 29911353
Alignment:
Q  166 taatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttct 241  Q
    ||||||||||||||||| |||||||||||| ||| || |||||| ||||| ||||| |||| ||||||||||||||    
T  29911278 taatctcacacgaggtgaggggactggaagcagctggatttggttaaccatgataaatctcatgtgttattcttct 29911353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 16446670 - 16446739
Alignment:
Q  155 actatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactc 224  Q
    ||||||||||||||||||||||||  ||||||||||| |||||| ||| ||| |||| ||||||||||||    
T  16446670 actatagtggataatctcacacgaaatgtggggactgaaagtagtcggatttagtgatccaggataactc 16446739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 48 - 241
Target Start/End: Complemental strand, 5378613 - 5378419
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgtta 146  Q
    ||||||||||||| ||| ||||||||||| |||||| || | || || ||||||||||||||||||||||  || |||||||||| ||||||||||||||    
T  5378613 gcaaagaattgtagaagtctgctgaggtttataatatagggtgtaacagactgatctggtgtgatcaagaccttatagtgctagttagaagtttctgtta 5378514  T
Q  147 gcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttct 241  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5378513 gcaagacaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataattctcctgtgttattcttct 5378419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 15810216 - 15809966
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 100  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||   |||||||||||| |||| ||| || |||||||||||||  || |||||||||    
T  15810216 cttaatagttt-gagatagaaaattccaacctttcttttgctggtt--caaagaattgtagaagcatgccgaagttgataatacaggtgtaacggactga 15810120  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtgggga--------ctgg 192  Q
    ||||||||||||||||  || |||||||| |||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||        ||||    
T  15810119 tctggtgtgatcaagaccttatagtgctactcagaagtttctgttaccaagataattatagtggataatctcacacgaggtgtggggactcgaactctgg 15810020  T
Q  193 aagtagccgggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    |||||| ||| |||||||||||||||||| |||| ||||||||| |||||||||    
T  15810019 aagtagtcggatttggtgaaccaggataattctcttgtgttattattctctctc 15809966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 48 - 238
Target Start/End: Complemental strand, 14272205 - 14272016
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  14272205 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacggactgatctggtgtgatcaagaccttatagtgtttgttagaagtttct---ac 14272109  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||  | | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14272108 caactgcatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 14272016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 48 - 232
Target Start/End: Complemental strand, 14282071 - 14281888
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  14282071 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacggactgatctggtgtgatcaagaccttatagtgtttgttagaagtttct---ac 14281975  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgt 232  Q
    |||  | | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14281974 caactgcatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgt 14281888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 51 - 241
Target Start/End: Complemental strand, 26906431 - 26906241
Alignment:
Q  51 aagaattgtataagcctgctgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagca 149  Q
    |||||||||| ||| ||||||||||||||||||||||| || || |||||||||||||||| |||||| || ||||||||||||||||||||||||| ||    
T  26906431 aagaattgtaaaagtctgctgaggttgataatacagagtgtaacagactgatctggtgtgaccaagaacttatagtgctagtcagaagtttctgttaaca 26906332  T
Q  150 agaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttct 241  Q
    ||| |  |||| |||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| |||| ||||||||||||||    
T  26906331 agatat-tataatggataatctcacacgaggtatggggactagaagtagcctggtttggtgaaccaggataaatctcgtgtgttattcttct 26906241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 48 - 246
Target Start/End: Complemental strand, 40999224 - 40999025
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgtta 146  Q
    ||||||||||||| ||| ||| ||||||||||||||||  | || ||  ||||||||||||||||||| |  || |||||||||||| ||||||| ||||    
T  40999224 gcaaagaattgtagaagtctgttgaggttgataatacatggtgtaacaaactgatctggtgtgatcaaaaccttatagtgctagtcataagtttccgtta 40999125  T
Q  147 gcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||  |||||||||| ||||||||    
T  40999124 gcaagacaactatagtggataatctcacacgaggtgtggggactggaagttgtcgggtttggtgaaccaggataactcttatgtgttattcctctctctc 40999025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 48 - 224
Target Start/End: Complemental strand, 3471124 - 3470949
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||  || || || | || |||||||||   ||     
T  3471124 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacggactgatctggtgtgatcaagaccttataatgttggttagaagtttc---tac 3471028  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactc 224  Q
    |||  | | |||| |||||||||||||||| || |||||||| ||||||||| ||||||||||||||||||||||||||    
T  3471027 caattgtatactacagtggataatctcacatgaagtgtgggggctggaagtaaccgggtttggtgaaccaggataactc 3470949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 62 - 241
Target Start/End: Original strand, 21633594 - 21633772
Alignment:
Q  62 aagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatag 161  Q
    |||||||||||||||||||||||||  ||| |||||||||||||||||| |||||  || || ||||||||||||||||||  |||  |||| |||||||    
T  21633594 aagcctgctgaggttgataatacagttgttccggactgatctggtgtgaccaagaccttataatgctagtcagaagtttctactag-tagaatactatag 21633692  T
Q  162 tggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttct 241  Q
    ||||||||||||||  | ||||||||||| || |||||||||||||||||||||| |||  | || ||||||||||||||    
T  21633693 tggataatctcacaaaaagtgtggggactagacgtagccgggtttggtgaaccagaatatttatcttgtgttattcttct 21633772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 94 - 246
Target Start/End: Complemental strand, 21919572 - 21919421
Alignment:
Q  94 ggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactg 191  Q
    |||||||||||||||||||||||  || ||||| | || ||||||||||   | |||  |||||||||||||||||||||||||||| ||||||||||||    
T  21919572 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgaaaactatagtggataatctcacacgaagtgtggggactg 21919476  T
Q  192 gaagtagccgggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    ||||||||||| || |||||| |||||||||||||||||||||||  ||||||||    
T  21919475 gaagtagccggattgggtgaatcaggataactctcctgtgttatttctctctctc 21919421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 235
Target Start/End: Original strand, 30676788 - 30676976
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgtta 146  Q
    |||||||||| ||||||  || |||| |||||||||||||| || || ||||||||| |||||||||||||  | |||||||| ||| ||||||||  ||    
T  30676788 gcaaagaattatataagtatgttgagattgataatacagagtgtaacagactgatcttgtgtgatcaagaacatatagtgctattcataagtttcttata 30676887  T
Q  147 gcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttg-gtgaaccaggataactctcctgtgttat 235  Q
    ||  ||| | | || ||||||||||||||||| |||||||||||| |||||| | | |||| |||||||| ||||| |||  ||||||||    
T  30676888 gc-tgaatattgtaatggataatctcacacgaagtgtggggactgaaagtagtctgctttgtgtgaaccatgataaatcttgtgtgttat 30676976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 233
Target Start/End: Complemental strand, 28310155 - 28310018
Alignment:
Q  92 acggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactg 191  Q
    ||||||||||||||||||||||| || || ||||| || || ||||||| || |||| || | ||||||||||||||   ||||||  ||||||  || |    
T  28310155 acggactgatctggtgtgatcaacaacttatagtgttattcggaagtttttgatagc-aggatactatagtggataa--ccacacgtagtgtggaaaccg 28310059  T
Q  192 gaagtagccgggtttggtgaaccaggataactctcctgtgtt 233  Q
    ||||||||| |||| |||||| |||||||| |||| ||||||    
T  28310058 gaagtagcc-ggttaggtgaatcaggataaatctcttgtgtt 28310018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 10 - 233
Target Start/End: Original strand, 256921 - 257142
Alignment:
Q  10 tttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtat-aagcctgctgaggttgataatacagaggttacggactgatctggtgt 108  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||  |||| |||||||||||||||||||||||||||| |||||||||||||    
T  256921 tttgagatagaaaattccaacctttcttttgctagtg--caaagaattgtaagaagcttgctgaggttgataatacagaggttacgaactgatctggtgt 257018  T
Q  109 gatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggttt 206  Q
    ||||||||  || ||||| | || |||||||||   || |||  ||| ||||||||||||||| |||||||| ||||||||||||||||||||||| |||    
T  257019 gatcaagactttatagtgttggttagaagtttc---taccaactgaatactatagtggataatttcacacgaagtgtggggactggaagtagccggattt 257115  T
Q  207 ggtgaaccaggataactctcctgtgtt 233  Q
    |||||||||||||||||||||||||||    
T  257116 ggtgaaccaggataactctcctgtgtt 257142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 48 - 246
Target Start/End: Original strand, 2109 - 2306
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||  || ||||| | || |||||||| |   |     
T  2109 gcaaagaattgtagaagcctgctgaggttgataatacagggattacggactgatctggtgtgatcaagaccttatagtgttggttagaagtttat---ac 2205  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttctctct 245  Q
    |||  | | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  2206 caactgtatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcttgtgttattcttctttct 2305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 246
Target Start/End: Original strand, 124047 - 124244
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  124047 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 124143  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttctctct 245  Q
    |||  | | |||||||||||||||||||||||| |||||||||||||||||| | || |||| ||||||||||||||||||||||||||||||||| |||    
T  124144 caactgcatactatagtggataatctcacacgaagtgtggggactggaagtaacaggatttgatgaaccaggataactctcctgtgttattcttctttct 124243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 70 - 221
Target Start/End: Original strand, 100002 - 100152
Alignment:
Q  70 tgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataa 168  Q
    ||||||||||||||||||| || || ||||||| |||||||||||| | ||| |||||||| ||||||||||||| |||| || | |||||| |||||||    
T  100002 tgaggttgataatacagagtgtaacagactgatttggtgtgatcaacatattatagtgctattcagaagtttctgatagc-aggatactataatggataa 100100  T
Q  169 tctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
    |||||||||  ||||||||||||||  ||||| |||| || ||||||||||||    
T  100101 tctcacacgtagtgtggggactggacatagcc-ggttaggcgaaccaggataa 100152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 143169 - 143237
Alignment:
Q  48 gcaaagaattgtataagcctgctgaggttgataatacagaggttacggactgatctggtgtgatcaaga 116  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  143169 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacggactgatctggtgtgatcaaga 143237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 51 - 221
Target Start/End: Complemental strand, 14999 - 14830
Alignment:
Q  51 aagaattgtataagcctgctgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagca 149  Q
    |||||| ||| ||||||||||||||||||||||||||| || || |||||||||||||||||||| | ||| |||||||| ||||||||||||| |||||    
T  14999 aagaatcgtagaagcctgctgaggttgataatacagagtgtaacagactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagca 14900  T
Q  150 agaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
     || | ||||||||||||||||||||||  |||||||||||||| |||||| |||| || ||||||||||||    
T  14899 ggata-ctatagtggataatctcacacgtagtgtggggactggacgtagcc-ggttaggcgaaccaggataa 14830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 51 - 221
Target Start/End: Original strand, 24593 - 24762
Alignment:
Q  51 aagaattgtataagcctgctgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagca 149  Q
    |||||| ||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||| | ||| |||||||| ||||||||||||| ||||     
T  24593 aagaatcgtagaagcctgctgaggttgataatacagagtgtaacggactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagc- 24691  T
Q  150 agaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
    || | |||||||||||||||||||||||  |||||||||||||| |||| | |||| || ||||||||||||    
T  24692 aggatactatagtggataatctcacacgtagtgtggggactggacgtag-ctggttaggcgaaccaggataa 24762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 94 - 246
Target Start/End: Complemental strand, 2402 - 2251
Alignment:
Q  94 ggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactg 191  Q
    |||||||||||||||||||||||  || ||||| | || ||||||||||   | |||  | | ||||||||||||||||||||| || |||||||||||     
T  2402 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactatagtggataatctcacaagaagtgtggggacta 2306  T
Q  192 gaagtagccgggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  2305 gaagtagccggattgggtgaaccaggataactctcctgtgttattcttctctctc 2251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 94 - 246
Target Start/End: Complemental strand, 12689 - 12538
Alignment:
Q  94 ggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactgga 193  Q
    ||||| |||||||||||||||||  || ||||| | || ||||||||||   | | | ||||||||||||||||||||||||||| |||| |||||||||    
T  12689 ggactaatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaacta-aaaactatagtggataatctcacacgaagtgtagggactgga 12591  T
Q  194 agtagccgggtttggtgaaccaggataactctcctgtgttattcttctctctc 246  Q
    ||||||||| || |||||||||||||||||||||| |||||||  ||||||||    
T  12590 agtagccggattgggtgaaccaggataactctcctatgttatttctctctctc 12538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 211
Target Start/End: Complemental strand, 27246 - 27078
Alignment:
Q  48 gcaaagaattgta-taagcctgctgaggttgataatacagag-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgtt 145  Q
    ||||||||||||| |||||||||||||||||||||||||||| || ||| | |||||| |||||||||||||  | ||||| || | ||||||||||| |    
T  27246 gcaaagaattgtaataagcctgctgaggttgataatacagagtgtaacgaattgatctagtgtgatcaagaacatatagtgttattaagaagtttctgat 27147  T
Q  146 agcaagaaaactatag----tggataatctcacacgaggtgtggggactggaagtagccgggtttggtga 211  Q
    ||   | | |||||||    ||||||||||||||||| || |||||||||||||||||||  ||||||||    
T  27146 ag-ttggatactatagtggatggataatctcacacgaagtatggggactggaagtagccgactttggtga 27078  T

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Target: scaffold0233 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 26356 - 26309
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtg 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26356 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtg 26309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 49501 - 49565
Alignment:
Q  159 tagtggataatctcacacgaggtgtggggactggaagtagccgg-gtttggtgaaccaggataact 223  Q
    ||||||||||||||||||  | |||||||| ||||||||||||| |||||| |||||| |||||||    
T  49501 tagtggataatctcacacttg-tgtggggagtggaagtagccggcgtttggcgaaccacgataact 49565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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