View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12992_low_12 (Length: 214)

Name: NF12992_low_12
Description: NF12992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12992_low_12
NF12992_low_12
[»] chr7 (2 HSPs)
chr7 (17-214)||(24389188-24389385)
chr7 (186-214)||(10936197-10936225)
[»] chr2 (5 HSPs)
chr2 (17-188)||(26587421-26587591)
chr2 (186-214)||(3555247-3555275)
chr2 (186-214)||(36382530-36382558)
chr2 (186-214)||(36755491-36755519)
chr2 (186-214)||(37895344-37895372)
[»] chr5 (4 HSPs)
chr5 (58-188)||(43248947-43249077)
chr5 (177-214)||(6150442-6150479)
chr5 (186-214)||(16083346-16083374)
chr5 (19-51)||(43248799-43248831)
[»] chr1 (4 HSPs)
chr1 (71-157)||(11549177-11549264)
chr1 (183-214)||(17662253-17662284)
chr1 (186-214)||(7820951-7820979)
chr1 (186-214)||(40772862-40772890)
[»] scaffold0707 (1 HSPs)
scaffold0707 (186-214)||(6482-6510)
[»] chr8 (3 HSPs)
chr8 (186-214)||(4995059-4995087)
chr8 (186-214)||(13186057-13186085)
chr8 (186-214)||(40318367-40318395)
[»] chr6 (2 HSPs)
chr6 (186-214)||(3059659-3059687)
chr6 (186-214)||(33517937-33517965)
[»] chr4 (4 HSPs)
chr4 (185-213)||(1178053-1178081)
chr4 (186-214)||(46661317-46661345)
chr4 (186-214)||(53129909-53129937)
chr4 (186-214)||(54713613-54713641)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 24389385 - 24389188
Alignment:
Q  17 tgacttatcgactacaatcattttatgaattgtttctacctactcaaatccaatatttgatcccaatttcgtatatcccatgtttcttgccaccccaata 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24389385 tgacttatcgactacaatcattttatgaattgtttctacctactcaaatccaatatttgatcccaatttcatatatcccatgtttcttgccaccccaata 24389286  T
Q  117 aaacttggatttaactatttaattgaatcaaatggtggaatctcgggacaataataatagtaataatacaaaggcttaaatatgtatttcatccttgc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24389285 aaacttggatttaactatttaattgaatcaaatggtggaatctcgggacaataataatagtaataatacaaaggcttaaatatgtatttcatccttgc 24389188  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 10936225 - 10936197
Alignment:
Q  186 aaaggcttaaatatgtatttcatccttgc 214  Q
    |||||||||||||||||||||||||||||    
T  10936225 aaaggcttaaatatgtatttcatccttgc 10936197  T

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Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 26587421 - 26587591
Alignment:
Q  17 tgacttatcgactacaatcattttatgaattgtttctacctactcaaatccaatatttgatcccaatttcgtatatcccatgtttcttgccaccccaata 116  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  26587421 tgacttatcgactacaatcattt-atgaattgtttctacctactcaaatccaatatttgatcccaatttcatatatctcatgtttcttgccaccccaata 26587519  T
Q  117 aaacttggatttaactatttaattgaatcaaatggtggaatctcgggacaataataatagtaataatacaaa 188  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  26587520 aaacttggatttaactatttaattgaatcgaatggtggaatctccggacaataataatagtaataatacaaa 26587591  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 3555247 - 3555275
Alignment:
Q  186 aaaggcttaaatatgtatttcatccttgc 214  Q
    |||||||||||||||||||||||||||||    
T  3555247 aaaggcttaaatatgtatttcatccttgc 3555275  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 36382558 - 36382530
Alignment:
Q  186 aaaggcttaaatatgtatttcatccttgc 214  Q
    |||||||||||||||||||||||||||||    
T  36382558 aaaggcttaaatatgtatttcatccttgc 36382530  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 36755519 - 36755491
Alignment:
Q  186 aaaggcttaaatatgtatttcatccttgc 214  Q
    |||||||||||||||||||||||||||||    
T  36755519 aaaggcttaaatatgtatttcatccttgc 36755491  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 37895344 - 37895372
Alignment:
Q  186 aaaggcttaaatatgtatttcatccttgc 214  Q
    |||||||||||||||||||||||||||||    
T  37895344 aaaggcttaaatatgtatttcatccttgc 37895372  T

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Target: chr5 (Bit Score: 111; Significance: 3e-56; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 58 - 188
Target Start/End: Original strand, 43248947 - 43249077
Alignment:
Q  58 actcaaatccaatatttgatcccaatttcgtatatcccatgtttcttgccaccccaataaaacttggatttaactatttaattgaatcaaatggtggaat 157  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||  |||||||||||    
T  43248947 actcaaatccaatatttgatcccaatttcgtatatcccatatttcttgccaccccagtaaaacttagatttaactatttaattgaatagaatggtggaat 43249046  T
Q  158 ctcgggacaataataatagtaataatacaaa 188  Q
    |||||||||||||||||||||||||||||||    
T  43249047 ctcgggacaataataatagtaataatacaaa 43249077  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 6150442 - 6150479
Alignment:
Q  177 taataatacaaaggcttaaatatgtatttcatccttgc 214  Q
    |||||| | |||||||||||||||||||||||||||||    
T  6150442 taataaaataaaggcttaaatatgtatttcatccttgc 6150479  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 16083374 - 16083346
Alignment:
Q  186 aaaggcttaaatatgtatttcatccttgc 214  Q
    |||||||||||||||||||||||||||||    
T  16083374 aaaggcttaaatatgtatttcatccttgc 16083346  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 43248799 - 43248831
Alignment:
Q  19 acttatcgactacaatcattttatgaattgttt 51  Q
    ||||||||||||||||||||||||||| |||||    
T  43248799 acttatcgactacaatcattttatgaactgttt 43248831  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 71 - 157
Target Start/End: Complemental strand, 11549264 - 11549177
Alignment:
Q  71 atttgatcccaatttcgtatatcccatgtttcttgccaccccaataaaa-cttggatttaactatttaattgaatcaaatggtggaat 157  Q
    ||||||||||||||||||| ||| | ||||||| | ||||| ||||||| |||  ||||||| |||||||||||||||||||||||||    
T  11549264 atttgatcccaatttcgtagatctcttgtttctcgtcaccctaataaaaacttatatttaacaatttaattgaatcaaatggtggaat 11549177  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 214
Target Start/End: Complemental strand, 17662284 - 17662253
Alignment:
Q  183 tacaaaggcttaaatatgtatttcatccttgc 214  Q
    ||||||||||||||||||||||||||||||||    
T  17662284 tacaaaggcttaaatatgtatttcatccttgc 17662253  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 7820951 - 7820979
Alignment:
Q  186 aaaggcttaaatatgtatttcatccttgc 214  Q
    |||||||||||||||||||||||||||||    
T  7820951 aaaggcttaaatatgtatttcatccttgc 7820979  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 40772890 - 40772862
Alignment:
Q  186 aaaggcttaaatatgtatttcatccttgc 214  Q
    |||||||||||||||||||||||||||||    
T  40772890 aaaggcttaaatatgtatttcatccttgc 40772862  T

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Target: scaffold0707 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 6510 - 6482
Alignment:
Q  186 aaaggcttaaatatgtatttcatccttgc 214  Q
    |||||||||||||||||||||||||||||    
T  6510 aaaggcttaaatatgtatttcatccttgc 6482  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 4995087 - 4995059
Alignment:
Q  186 aaaggcttaaatatgtatttcatccttgc 214  Q
    |||||||||||||||||||||||||||||    
T  4995087 aaaggcttaaatatgtatttcatccttgc 4995059  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 13186057 - 13186085
Alignment:
Q  186 aaaggcttaaatatgtatttcatccttgc 214  Q
    |||||||||||||||||||||||||||||    
T  13186057 aaaggcttaaatatgtatttcatccttgc 13186085  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 40318395 - 40318367
Alignment:
Q  186 aaaggcttaaatatgtatttcatccttgc 214  Q
    |||||||||||||||||||||||||||||    
T  40318395 aaaggcttaaatatgtatttcatccttgc 40318367  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 3059687 - 3059659
Alignment:
Q  186 aaaggcttaaatatgtatttcatccttgc 214  Q
    |||||||||||||||||||||||||||||    
T  3059687 aaaggcttaaatatgtatttcatccttgc 3059659  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 33517965 - 33517937
Alignment:
Q  186 aaaggcttaaatatgtatttcatccttgc 214  Q
    |||||||||||||||||||||||||||||    
T  33517965 aaaggcttaaatatgtatttcatccttgc 33517937  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 1178053 - 1178081
Alignment:
Q  185 caaaggcttaaatatgtatttcatccttg 213  Q
    |||||||||||||||||||||||||||||    
T  1178053 caaaggcttaaatatgtatttcatccttg 1178081  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 46661345 - 46661317
Alignment:
Q  186 aaaggcttaaatatgtatttcatccttgc 214  Q
    |||||||||||||||||||||||||||||    
T  46661345 aaaggcttaaatatgtatttcatccttgc 46661317  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 53129937 - 53129909
Alignment:
Q  186 aaaggcttaaatatgtatttcatccttgc 214  Q
    |||||||||||||||||||||||||||||    
T  53129937 aaaggcttaaatatgtatttcatccttgc 53129909  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 54713613 - 54713641
Alignment:
Q  186 aaaggcttaaatatgtatttcatccttgc 214  Q
    |||||||||||||||||||||||||||||    
T  54713613 aaaggcttaaatatgtatttcatccttgc 54713641  T

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