View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12992_low_13 (Length: 214)
Name: NF12992_low_13
Description: NF12992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12992_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 12245552 - 12245368
Alignment:
| Q |
18 |
ctctattgttaggaaccttgcatgtaatggcacatccattaccaacttctcgttccatgtagggtaacttcctccttcggaatcaagtttcgtggtgatc |
117 |
Q |
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| T |
12245552 |
ctctattgttaggaaccttgcatgtaatggcacatccattaccaacttctcgttccatgtagggtaacttcctccttcggaatcaagtttcgtggtgctc |
12245453 |
T |
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| Q |
118 |
acttccttgttgcttccgtcacattgaaccgtaacgaatgtgttcccttttatggcttttttgttctcttgaagattctctgctg |
202 |
Q |
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| T |
12245452 |
acttccctgttgcttccgtcacattgaaccgtaacgaatgtgttcccttttatggcttttttgttctcttgaagattctctgctg |
12245368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 12235526 - 12235342
Alignment:
| Q |
18 |
ctctattgttaggaaccttgcatgtaatggcacatccattaccaacttctcgttccatgtagggtaacttcctccttcggaatcaagtttcgtggtgatc |
117 |
Q |
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| T |
12235526 |
ctctattgttacgaaccttgcatgtaatggcacgtcgatcactaccttctcgttccatgtaggataacttccgccttcagaatcaagtttcgtggtgctc |
12235427 |
T |
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| Q |
118 |
acttccttgttgcttccgtcacattgaaccgtaacgaatgtgttcccttttatggcttttttgttctcttgaagattctctgctg |
202 |
Q |
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| T |
12235426 |
acttcattattgcttccgtcacattgaaccatgacaaatgtgtttccttttatggcttttttgttctcttgaagattctccgctg |
12235342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 12239011 - 12238827
Alignment:
| Q |
18 |
ctctattgttaggaaccttgcatgtaatggcacatccattaccaacttctcgttccatgtagggtaacttcctccttcggaatcaagtttcgtggtgatc |
117 |
Q |
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| T |
12239011 |
ctctattgtaacgaaccttgcatgtaatggcacgtcgatcactaccttctcgttccatgtaggataacttccgccttcagaatcaagtttcgtggtgctc |
12238912 |
T |
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| Q |
118 |
acttccttgttgcttccgtcacattgaaccgtaacgaatgtgttcccttttatggcttttttgttctcttgaagattctctgctg |
202 |
Q |
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| T |
12238911 |
acttcattattgcttccgtcacattgaaccgtgacaaatgtgtttccttttatggcttttttgttctcttgaagattctccgctg |
12238827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 12229476 - 12229292
Alignment:
| Q |
18 |
ctctattgttaggaaccttgcatgtaatggcacatccattaccaacttctcgttccatgtagggtaacttcctccttcggaatcaagtttcgtggtgatc |
117 |
Q |
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| T |
12229476 |
ctctattgtaacgaaccttgcatgtaatggcatgtcgatcactaccttctcgttccatgtaggataacttccgccttcagaatcaagtttcgtggtgctc |
12229377 |
T |
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| Q |
118 |
acttccttgttgcttccgtcacattgaaccgtaacgaatgtgttcccttttatggcttttttgttctcttgaagattctctgctg |
202 |
Q |
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| T |
12229376 |
acttcattattgcttccgtcacattgaaccgtgacaaatgtgtttccttttatggcttttttgttttcttggagattctccgctg |
12229292 |
T |
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