View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12992_low_2 (Length: 480)
Name: NF12992_low_2
Description: NF12992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12992_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 25 - 463
Target Start/End: Complemental strand, 19796762 - 19796314
Alignment:
| Q |
25 |
taacgatgtcttcgtcgatcaaatggtcgccaacttcaattctcttgcaactaaccgaaacccaccaatggggtttaccgaaaacatgtcaccaacattt |
124 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||| || || |||||||||||||| ||| |
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| T |
19796762 |
taacgatgtcttcctcgatcaaatggtcgccaacttcaattctcttggtagaaaccgaaacccaccgatggggttgacagagaacatgtcaccaacgttt |
19796663 |
T |
|
| Q |
125 |
ctctacaccggtaacccttgcctcgatttcttcttccacgttgttcccgatactccctctgaagcactcgttgagaggctcaaactagcttggtcacaca |
224 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||| ||||||||||||| |||||||| |||||||| || | |
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| T |
19796662 |
ctctccaccggtaacccttgcctcgatttcttcttccatgttgttcctgatactccttctgaaacactcgttgagagactcaaacttgcttggtcccaaa |
19796563 |
T |
|
| Q |
225 |
acccactcaccactctcaaactcgtctgtaacctccgtggtgttcgcg----------gtccgacaaagaaggcttctacgccgctgctctatggtttca |
314 |
Q |
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|||| |||||| | |||||||||||||||||||||||||| || |||| |||| |||||||||||||||||||||| ||||| |||||||| |
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| T |
19796562 |
accctctcaccgccctcaaactcgtctgtaacctccgtggcgtccgcggtaccggaaagtccaacaaagaaggcttctacgccgccgctctctggtttca |
19796463 |
T |
|
| Q |
315 |
tgaaaatcaccctaaaaccctagctaccaatgttcctacacttgctcactttggttacttcaaagatctccctgaaattctataccgtattctccaaggt |
414 |
Q |
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||||||||||||||||||||||||||||||||||||| | || ||| ||||||| |||||||||||||||||||| || || |||||| ||||| ||||| |
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| T |
19796462 |
tgaaaatcaccctaaaaccctagctaccaatgttccttctctcgctgactttggctacttcaaagatctccctgagatcctctaccgtcttctcgaaggt |
19796363 |
T |
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| Q |
415 |
tctggaattcgtgaaatccagaaagaagagtggaatgaaaggaaatctg |
463 |
Q |
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| T |
19796362 |
tctgaagttcgcaaaacacagaaagaagagtggagggaaaggaaatctg |
19796314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 332 - 463
Target Start/End: Original strand, 19785157 - 19785288
Alignment:
| Q |
332 |
ccctagctaccaatgttcctacacttgctcactttggttacttcaaagatctccctgaaattctataccgtattctccaaggttctggaattcgtgaaat |
431 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19785157 |
ccctaactaccaatgttcctacacttgctgactttggttacttcaaagatctccctgaaattctataccgtattctccaaggttctggaattcgtgaaat |
19785256 |
T |
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| Q |
432 |
ccagaaagaagagtggaatgaaaggaaatctg |
463 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
19785257 |
ccagaaagaagagtggaatgaaaggaaatctg |
19785288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 25 - 447
Target Start/End: Complemental strand, 15836000 - 15835568
Alignment:
| Q |
25 |
taacgatgtcttcgtcgatcaaatggtcgccaacttcaattctcttgcaactaaccgaaacccaccaatggggtttaccgaaaacatgtcaccaacattt |
124 |
Q |
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|||| ||||||| |||||||||||||| | ||||||||||||||| |||| |||||||||||||| |||||||| ||||| ||||||||||| |||||| |
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| T |
15836000 |
taacaatgtctttgtcgatcaaatggtggacaacttcaattctctggcaagtaaccgaaacccactgatggggttcaccgagaacatgtcaccgacattt |
15835901 |
T |
|
| Q |
125 |
ctctacaccggtaacccttgcctcgatttcttcttccacgttgttcccgatactccctctgaagcactcgttgagaggctcaaactagcttggtcacaca |
224 |
Q |
| |
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|||| |||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||| |||| || ||||| ||||||||||| ||||| || | |
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| T |
15835900 |
ctctccaccggtaacccatgccttgatttcttcttccatgttgtccccgatactccctctgaaacacttgtcgagagactcaaactagcatggtcccata |
15835801 |
T |
|
| Q |
225 |
acccactcaccactctcaaactcgtctgtaacctccgtggtgttcgcg----------gtccgacaaagaaggcttctacgccgctgctctatggtttca |
314 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||| | |||| | ||||||||||||||||| |||||||| ||||| || |
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| T |
15835800 |
acccactcaccaccctcaaactcgtctgtaacctccgtggtgttcgtggtaccggcaagtccaataaagaaggcttctacgctgctgctctctggttgca |
15835701 |
T |
|
| Q |
315 |
tgaaaatcaccctaaaaccctagctaccaatgttcctacacttgctcactttggttacttcaaagatctccctgaaattctataccgtattctccaaggt |
414 |
Q |
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|||||||||||||||||||||||||||||||||| || || | ||| ||||||||||||||||||||||||||| || || |||||| ||||| ||||| |
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| T |
15835700 |
tgaaaatcaccctaaaaccctagctaccaatgtttcttcattcgctgcctttggttacttcaaagatctccctgagatcctctaccgtcttctcgaaggt |
15835601 |
T |
|
| Q |
415 |
tctggaattcgtgaaatccagaaagaagagtgg |
447 |
Q |
| |
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| || | |||| |||| ||||||||||||||| |
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| T |
15835600 |
tttgaagttcgcgaaaagcagaaagaagagtgg |
15835568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 224 - 460
Target Start/End: Complemental strand, 47713615 - 47713369
Alignment:
| Q |
224 |
aacccactcaccactctcaaactcgtctgtaacctccgtggtgttcgcggt-ccgacaaa---------gaaggcttctacgccgctgctctatggtttc |
313 |
Q |
| |
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|||||||||||||| || |||||||||||||||||||| || ||||||||| ||| ||| ||||| ||||||||||||||||| ||||||| |
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| T |
47713615 |
aacccactcaccacccttaaactcgtctgtaacctccgcggcgttcgcggtaccggcaagtccgatcgtgaaggtttctacgccgctgctctttggtttc |
47713516 |
T |
|
| Q |
314 |
atgaaaatcaccctaaaaccctagctaccaatgttcctacacttgctcactttggttacttcaaagatctccctgaaattctataccgtattctccaagg |
413 |
Q |
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| | | |||||||||||||||||| | || || ||| | |||||| ||||||||||||||||||||||||| ||||| || |||||| |||| ||||| |
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| T |
47713515 |
accactaccaccctaaaaccctagcttctaacgtcccttcccttgctgactttggttacttcaaagatctcccagaaatcctttaccgtcttctgcaagg |
47713416 |
T |
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| Q |
414 |
ttctggaattcgtgaaatccagaaagaagagtggaatgaaaggaaat |
460 |
Q |
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| | || ||| |||||||||||||||| |||||| ||| ||||| |
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| T |
47713415 |
taccaatatacgtaaaatccagaaagaagaatggaatcaaaagaaat |
47713369 |
T |
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