View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12992_low_3 (Length: 444)
Name: NF12992_low_3
Description: NF12992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12992_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 144 - 426
Target Start/End: Original strand, 4637434 - 4637716
Alignment:
| Q |
144 |
ccaactaagatttcctcatgtttatcattgtgtttgtgggtcatgtgtgactgaacatagtgatggtgacagtggnnnnnnnggcacggtcagaaaaaga |
243 |
Q |
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| T |
4637434 |
ccaactaagatttcctcatgtttatcattgtgtttgtgggtcatgtgtgactgaacatagtgatggtgacagtggaaaaaaaggcacggtcagaaaaaga |
4637533 |
T |
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| Q |
244 |
ctcaactcaaactgatagtgaactacagtaaagtatatctgcttcagatgtgttttctaatcttctctgatactgacggtatattgagtaatccccctca |
343 |
Q |
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| T |
4637534 |
ctcaactcaaactgatagtgaactacagtaaagtatatctgcttcagatgtgttttctaatcttctctggtactgacggtatattgagtaatccccctca |
4637633 |
T |
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| Q |
344 |
tatggaaaagttcataaatatattgaaataacaactctcagtttcaattaagtctctatgtaatatgtatgttatatttgttt |
426 |
Q |
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| T |
4637634 |
tatggaaaagttcataaatatattgaaataacaactctcagtttcaattaagtctctatgtaatatgtatgttatatttgttt |
4637716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 4637308 - 4637364
Alignment:
| Q |
18 |
agatttatcttctataaaaaatgaataagatatttgaacaatttttatttagttaca |
74 |
Q |
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| T |
4637308 |
agatttatcttctataaaaaatgaataagatatttgaacaatttttatttagttaca |
4637364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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