View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12992_low_4 (Length: 427)
Name: NF12992_low_4
Description: NF12992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12992_low_4 |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 12095396 - 12095025
Alignment:
| Q |
18 |
cagactagagtggaaaggtattcaaagttgcagctagtttctgcaataaccaatggctctcttggtttgttgcatttgttcttaggcatttcgattttgg |
117 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
12095396 |
cagaatagagtggaaagttattcaaagttgcagctagtttctgcaataaccaatggctctcttggtttgttgcatttgttcttaggcatttggattttag |
12095297 |
T |
|
| Q |
118 |
aagaaaagttaaggaaaaacctcactgtttctcctcttacttggtggccactagaacttcttcacggattcacatggatcttagtttctttaactataag |
217 |
Q |
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| || ||||||||||||||||||||||||| |||||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||| |
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| T |
12095296 |
aggagaagttaaggaaaaacctcactgtttttcctcttacttggtggccgctagagttttttcacggattcacatggatcttagttggtttaactataaa |
12095197 |
T |
|
| Q |
218 |
tcttgtgccgaaacaacttccaagaacatggttgagaatgttttctattcttacattctttgtttctagtattttctgtgctttgtcattatcttatgca |
317 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
12095196 |
tcttgtgccgaaacaacttccaagaacatggtggcgaatgttttctattcttatattctttgtttctggtattttctgtgcattgtcattatcttatgca |
12095097 |
T |
|
| Q |
318 |
tttagcagcaaggaaacatcccttaaagttgctttagatgttctatcttttttgggagtaattttgctgctc |
389 |
Q |
| |
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||||| ||||| |||| |||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
12095096 |
tttagtagcaaagaaatgtcccttaaggtagctttagatgttctatcttttttgggagtaattttgctgctc |
12095025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 11754539 - 11754910
Alignment:
| Q |
18 |
cagactagagtggaaaggtattcaaagttgcagctagtttctgcaataaccaatggctctcttggtttgttgcatttgttcttaggcatttcgattttgg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| | |
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| T |
11754539 |
cagactagagtggaaaggtattcaaagttgcagctagtttctgcaataaccaatggctctcttggtttgttgcattttttcttaggcatttggattttag |
11754638 |
T |
|
| Q |
118 |
aagaaaagttaaggaaaaacctcactgtttctcctcttacttggtggccactagaacttcttcacggattcacatggatcttagtttctttaactataag |
217 |
Q |
| |
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| || ||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
11754639 |
aggagaagttaaggaaaaacctcactgtttttcctcatacttggtggccactacaacttcttcacggatttacatggatcttagttgctttaactataag |
11754738 |
T |
|
| Q |
218 |
tcttgtgccgaaacaacttccaagaacatggttgagaatgttttctattcttacattctttgtttctagtattttctgtgctttgtcattatcttatgca |
317 |
Q |
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|||| ||||||||||||||||||||||||| |||||| ||||| |||| |||| ||| ||||||||| ||||||| ||||||||||| ||||||| |||| |
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| T |
11754739 |
tcttctgccgaaacaacttccaagaacatgcttgagactgtttactatgcttatattttttgtttctggtattttatgtgctttgtccttatcttttgca |
11754838 |
T |
|
| Q |
318 |
tttagcagcaaggaaacatcccttaaagttgctttagatgttctatcttttttgggagtaattttgctgctc |
389 |
Q |
| |
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|||||||||||||| |||||||| | |||||||||||||||||||||||||||||| |||| |||||| |
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| T |
11754839 |
cttagcagcaaggaactgtcccttaagatagctttagatgttctatcttttttgggagtacttttactgctc |
11754910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 37 - 320
Target Start/End: Complemental strand, 11741152 - 11740869
Alignment:
| Q |
37 |
attcaaagttgcagctagtttctgcaataaccaatggctctcttggtttgttgcatttgttcttaggcatttcgattttggaagaaaagttaaggaaaaa |
136 |
Q |
| |
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||||||||||||| | |||||| | ||||||||||| | |||||||||||||||||| | |||| |||| |||||| || || || ||| ||||| |
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| T |
11741152 |
attcaaagttgcaattggtttcttccataaccaatggttgcattggtttgttgcatttgtgcctaggaatttggattttagaggagaacctaaagaaaag |
11741053 |
T |
|
| Q |
137 |
cctcactgtttctcctcttacttggtggccactagaacttcttcacggattcacatggatcttagtttctttaactataagtcttgtgccgaaacaactt |
236 |
Q |
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|| || ||| |||||||| |||||||| |||||||||||||| ||| || ||||||| ||| || |||||||| |||| || ||| |||| ||||| |
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| T |
11741052 |
tttctctatttttcctcttagttggtggctgctagaacttcttcaaggaatctcatggatgttaattggtttaactacaagttttctgctgaaaaaactt |
11740953 |
T |
|
| Q |
237 |
ccaagaacatggttgagaatgttttctattcttacattctttgtttctagtattttctgtgctttgtcattatcttatgcattt |
320 |
Q |
| |
|
|||||||||||||||||| | |||||| |||||| ||| ||||||||||||||||| |||||||| || ||||||||||||||| |
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| T |
11740952 |
ccaagaacatggttgagactattttcttttcttatattttttgtttctagtattttttgtgctttttccttatcttatgcattt |
11740869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 11616926 - 11617028
Alignment:
| Q |
36 |
tattcaaagttgcagctagtttctgcaataaccaatggctctcttggtttgttgcatttgttcttaggcatttcgattttggaagaaaagttaaggaaaa |
135 |
Q |
| |
|
|||||||| |||||| |||||||||| ||||||||||||| ||| |||||||||||||| | |||||| ||| |||||| || || ||||||||||||| |
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| T |
11616926 |
tattcaaacttgcagttagtttctgccataaccaatggctttctaggtttgttgcatttatccttaggagtttggattttagaggagaagttaaggaaaa |
11617025 |
T |
|
| Q |
136 |
acc |
138 |
Q |
| |
|
||| |
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|
| T |
11617026 |
acc |
11617028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 11633309 - 11633207
Alignment:
| Q |
36 |
tattcaaagttgcagctagtttctgcaataaccaatggctctcttggtttgttgcatttgttcttaggcatttcgattttggaagaaaagttaaggaaaa |
135 |
Q |
| |
|
|||||||| |||||| |||||||||| |||| |||||||| ||| || ||||||||||| | |||||| ||| |||||| || || ||||||||||||| |
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| T |
11633309 |
tattcaaacttgcagttagtttctgccataatcaatggctttctagggttgttgcatttatccttaggagtttggattttagaggagaagttaaggaaaa |
11633210 |
T |
|
| Q |
136 |
acc |
138 |
Q |
| |
|
||| |
|
|
| T |
11633209 |
acc |
11633207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 36 - 266
Target Start/End: Complemental strand, 11711827 - 11711597
Alignment:
| Q |
36 |
tattcaaagttgcagctagtttctgcaataaccaatggctctcttggtttgttgcatttgttcttaggcatttcgattttggaagaaaagttaaggaaaa |
135 |
Q |
| |
|
|||||||| ||||||||||||||| | |||||||| |||||||||||||| |||||||| | |||||| ||| | || ||| ||||| ||||||||| |
|
|
| T |
11711827 |
tattcaaacttgcagctagtttcttccataaccaacggctctcttggtttcttgcatttatgcttaggaattagggacttagaacaaaagataaggaaaa |
11711728 |
T |
|
| Q |
136 |
acctcactgtttctcctcttacttggtggccactagaacttcttcacggattcacatggatcttagtttctttaactataagtcttgtgccgaaacaact |
235 |
Q |
| |
|
||| || || | |||| ||| ||||||| ||| ||||| ||||||| | |||||| | || || |||||||||||||||| | |||||||| |
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|
| T |
11711727 |
accacaatgcctttcctattaattggtggttactcgaactctttcacggttcaacatggttgtttgtaagtttaactataagtcttcggataaaacaact |
11711628 |
T |
|
| Q |
236 |
tccaagaacatggttgagaatgttttctatt |
266 |
Q |
| |
|
|||| || |||||||| | ||||||||||| |
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| T |
11711627 |
tccacgagcatggttgttactgttttctatt |
11711597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 284
Target Start/End: Original strand, 11661742 - 11661990
Alignment:
| Q |
36 |
tattcaaagttgcagctagtttctgcaataaccaatggctctcttggtttgttgcatttgttcttaggcatttcgattttggaagaaaagttaaggaaaa |
135 |
Q |
| |
|
|||||||| ||||||||||||||| | || | ||||||||||||||| || |||||||| | ||||| |||| | | || ||||| || ||||||||| |
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|
| T |
11661742 |
tattcaaacttgcagctagtttctaccattatcaatggctctcttgggtttttgcatttatgtttaggaatttgggtattagaagagaatataaggaaaa |
11661841 |
T |
|
| Q |
136 |
acctcactgtttctcctcttacttggtggccactagaacttcttcacggattcacatggatcttagtttctttaactataagtcttgtgccgaaacaact |
235 |
Q |
| |
|
||| | | | |||||||| ||||||| || ||||| |||| |||| |||||| | || || |||||||||||||||| | |||||||| |
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|
| T |
11661842 |
accacgacgcatttcctcttaattggtggttgctcgaactctttcatggatcaacatggttgtttgtaagtttaactataagtcttcagataaaacaact |
11661941 |
T |
|
| Q |
236 |
tccaagaacatggttgagaatgttttctattcttacattctttgtttct |
284 |
Q |
| |
|
|||||| ||||||| | |||||||||||||| | ||| ||||||||| |
|
|
| T |
11661942 |
gccaagagcatggttttggatgttttctattctcatattttttgtttct |
11661990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 138
Target Start/End: Original strand, 44810334 - 44810426
Alignment:
| Q |
46 |
tgcagctagtttctgcaataaccaatggctctcttggtttgttgcatttgttcttaggcatttcgattttggaagaaaagttaaggaaaaacc |
138 |
Q |
| |
|
|||| ||||||||| | ||||||||||| |||||| ||| ||||||| ||||| ||||||| |||||| ||||| ||||| |||||||||| |
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|
| T |
44810334 |
tgcaactagtttcttccataaccaatggtgttcttgggttggtgcatttattctttggcatttggatttttgaagagaagttgaggaaaaacc |
44810426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 136
Target Start/End: Original strand, 11275 - 11375
Alignment:
| Q |
36 |
tattcaaagttgcagctagtttctgcaataaccaatggctctcttggtttgttgcatttgttcttaggcatttcgattttggaagaaaagttaaggaaaa |
135 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||||||||||| |||||| ||| | || | | |||||| |||| |||||| | ||||| |||||||||| |
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|
| T |
11275 |
tattcaaacttgcagctagtctctgccataaccaatggctttcttgggttgctacaaatttccttaggaatttggattttaaaggaaaaattaaggaaaa |
11374 |
T |
|
| Q |
136 |
a |
136 |
Q |
| |
|
| |
|
|
| T |
11375 |
a |
11375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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