View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12992_low_7 (Length: 352)
Name: NF12992_low_7
Description: NF12992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12992_low_7 |
 | |
|
| [»] scaffold0028 (2 HSPs) |
| | |
|
| [»] scaffold0482 (1 HSPs) |
| | |
|
| [»] scaffold0040 (2 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
| [»] scaffold0233 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0028 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 94795 - 95140
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
94795 |
agagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
94894 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
94895 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgat |
94994 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
94995 |
ttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataac |
95094 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
95095 |
cagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
95140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 104236 - 104581
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
104236 |
agagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
104335 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
104336 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgat |
104435 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
104436 |
ttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataac |
104535 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
104536 |
cagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
104581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 7592830 - 7592485
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7592830 |
agagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
7592731 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7592730 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgat |
7592631 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7592630 |
ttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataac |
7592531 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7592530 |
cagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
7592485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 15173143 - 15172798
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15173143 |
agagagcatggaattttctttgtttgcgaagagctttgtttgtagtgatgattttcacttagagagatattagcttgcaaaactcttgcttatgaccttc |
15173044 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15173043 |
aaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgat |
15172944 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15172943 |
ttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcgcatgagataac |
15172844 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
||||| |||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
15172843 |
cagctataatgagctgtataacttgctgctcacttctgatgatgtc |
15172798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 15202566 - 15202224
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15202566 |
agagagcttggaatttcctttgtttgcgaagagctttgtttgtagtgatgattttcacttagagagatat---cttgcaaaactcttgcttatgaccttc |
15202470 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15202469 |
aaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcaattgat |
15202370 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||| ||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
15202369 |
ttctcttttcttctttaaaatagccagaacgttctatgaatgttctttctgatttgtctggctttaaaagcactgttgctttgcttgcgcatgagataac |
15202270 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
15202269 |
cagctgtaatgagttgtataacttgctgcccacttctgatgatgtc |
15202224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 106 - 346
Target Start/End: Original strand, 4118893 - 4119133
Alignment:
| Q |
106 |
cccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4118893 |
cccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctc |
4118992 |
T |
|
| Q |
206 |
ttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagct |
305 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4118993 |
ttttcttctttaaaatagccaaaacgttctcagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcgcatgagataaccagct |
4119092 |
T |
|
| Q |
306 |
gtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
4119093 |
ttaatgagctgtataacttgttgctcacttctgatgatgtc |
4119133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 18420376 - 18420031
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18420376 |
agagagctttgaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
18420277 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18420276 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgat |
18420177 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18420176 |
ttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataac |
18420077 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18420076 |
cagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
18420031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 23895980 - 23896325
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23895980 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttacaaaactcttgcttatgaccttc |
23896079 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
23896080 |
aaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatagagctgttggacacgtttttgatagttgtccaaagtctcaattgat |
23896179 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23896180 |
ttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcgcatgagataac |
23896279 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23896280 |
cagctgtaatgagctgtataacttgctgcccacttctgatgatgtc |
23896325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 28 - 246
Target Start/End: Complemental strand, 14101988 - 14101770
Alignment:
| Q |
28 |
gaagagctttgtttgtagtgatgattttcactttgagaga-tattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgagg |
126 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| |||| | |||| |||| ||||||||||| | | || |||||| | |||||||||||||||||| |
|
|
| T |
14101988 |
gaagagttttgtatgtagtgatgattttcactt-gagataatatttgctttaaaaactcttgcatttaacattcaaaaccaattgtatttataggtgagg |
14101890 |
T |
|
| Q |
127 |
agtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttatcttctttaaaatagcca |
226 |
Q |
| |
|
|||| |||||||| |||| | |||||||||| ||||||| ||||||||| |||||||||||| ||| |||||||| ||| ||||| |||||| | | |
|
|
| T |
14101889 |
agtgccttggtgatcaagagtgaaaatagagttgttggatacgtttttggcagctgtccaaagcttcaattgatttcacttttcttcattaaaacgggaa |
14101790 |
T |
|
| Q |
227 |
taacgttctcagaatgttct |
246 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
14101789 |
gaacgttctcagaatgttct |
14101770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 30445193 - 30445538
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30445193 |
agagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagctttcaaaactcttgcttatgaccttc |
30445292 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30445293 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
30445392 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30445393 |
ttctcttttcttcttaaaaatagccagaacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
30445492 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30445493 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
30445538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 30454565 - 30454910
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30454565 |
agagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagctttcaaaactcttgcttatgaccttc |
30454664 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30454665 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
30454764 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30454765 |
ttctcttttcttcttaaaaatagccagaacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
30454864 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30454865 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
30454910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 30459623 - 30459968
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30459623 |
agagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagctttcaaaactcttgcttatgaccttc |
30459722 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30459723 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
30459822 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30459823 |
ttctcttttcttcttaaaaatagccagaacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
30459922 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30459923 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
30459968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 18568862 - 18568517
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18568862 |
agagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagctttcaaaactcttgcttatgaccttc |
18568763 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18568762 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
18568663 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18568662 |
ttctcttttcttcttaaaaatagccagaacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
18568563 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
18568562 |
cagctgtaatgagctgtgtaacttgcagtccacttctgatgatgtc |
18568517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 24412652 - 24412307
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24412652 |
agagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
24412553 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24412552 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgat |
24412453 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24412452 |
ttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataac |
24412353 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24412352 |
cagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
24412307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 22489010 - 22488666
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22489010 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcacttagagagatattagcttgcaaaactcttgcttatgaccttc |
22488911 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22488910 |
aaagacccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgat |
22488811 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
22488810 |
ttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcactgttgc-ttgcttgcacatgagataac |
22488712 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | | ||||||||||| |
|
|
| T |
22488711 |
cagctgtaatgagctgtataacttgctgcctaatgctgatgatgtc |
22488666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 24422101 - 24421767
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24422101 |
agagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
24422002 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24422001 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgctggacacgtttttgatagctgtccaaagtctcaattgat |
24421902 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24421901 |
ttctcttttcttctttaaaatagc-----------cagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataac |
24421813 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24421812 |
cagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
24421767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 33 - 346
Target Start/End: Complemental strand, 4635754 - 4635442
Alignment:
| Q |
33 |
gctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtc |
132 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4635754 |
gctttgtttgcagtgatgattttcacttagagagatattagcttgcaaaactctagcttatgaccttcaaagacccttgtatttataggtgaggagtgtc |
4635655 |
T |
|
| Q |
133 |
ttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttatcttctttaaaatagccataacgt |
232 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||| |||| |||||||||||||||| | || || |
|
|
| T |
4635654 |
ttggtgatcaagggagaaaatagagctgttggatgcgtttttgatagttgtccaaagtctcaattgatttttcttttcttctttaaaatagctagaatgt |
4635555 |
T |
|
| Q |
233 |
tctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataacttgcagccca |
332 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||| |||| |||||||||| ||||| |||||| ||||||||| ||||||||||| || || |
|
|
| T |
4635554 |
tctcaaaatgttctttctgatttgcctggctttgaaagcactattgc-ttgcttgcgcgtgagagaaccagttgtaatgagttgtataacttgttgcgca |
4635456 |
T |
|
| Q |
333 |
cttctgatgatgtc |
346 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
4635455 |
ctgctgatgatgtc |
4635442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 143 - 317
Target Start/End: Original strand, 24278813 - 24278987
Alignment:
| Q |
143 |
agggagaaaatagagctgttggacacgtttt-tgatagctgtccaaagtctcatttgatttctcttatcttcttt-aaaatagccataacgttctcagaa |
240 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||| ||||| ||||||||||| |||||||| |||||||||| |||||||||| || |
|
|
| T |
24278813 |
agggagaaaatagagttgttggacacgttttttgatagctgtccaaaatctcagttgatttctctcttcttctttaaaaatagccagaacgttctca-aa |
24278911 |
T |
|
| Q |
241 |
tgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgt |
317 |
Q |
| |
|
|||| | |||||||||||| |||||| ||| |||||| ||||||| |||||||| ||||| |||||||| |||| |
|
|
| T |
24278912 |
tgttgtgtctgatttgcctaactttgcttgcattgttgc-ttgcttgtgcatgagagtaccagttgtaatgaactgt |
24278987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 143 - 317
Target Start/End: Complemental strand, 24383401 - 24383227
Alignment:
| Q |
143 |
agggagaaaatagagctgttggacacgttttt-gatagctgtccaaagtctcatttgatttctcttatcttcttt-aaaatagccataacgttctcagaa |
240 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||| |||||||||| |||||||||| || |
|
|
| T |
24383401 |
agggagaaaatagagttgttggacacgttttttgatagctgtccaaaatctcagttgatttctctcttcttctttaaaaatagccagaacgttctca-aa |
24383303 |
T |
|
| Q |
241 |
tgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgt |
317 |
Q |
| |
|
|||| | |||||||||||| |||||| ||| |||||| ||||||| |||||||| ||||| |||||||| |||| |
|
|
| T |
24383302 |
tgttgtgtctgatttgcctaactttgcttgcattgttgc-ttgcttgtgcatgagagtaccagttgtaatgaactgt |
24383227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 22118460 - 22118545
Alignment:
| Q |
2 |
gagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagag-atattagcttgcaaaactctt |
87 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||| |||||||||||||||||| ||||||| ||||| |||| |||||||||| |
|
|
| T |
22118460 |
gagagcttggaatttgatttgtttgtgaagagctttgtatgtagtgatgattttcac-ttgagagaatatttgctttcaaaactctt |
22118545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 3242651 - 3242996
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3242651 |
agagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
3242750 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3242751 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgat |
3242850 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3242851 |
ttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataac |
3242950 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3242951 |
cagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
3242996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 3917890 - 3917545
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3917890 |
agagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
3917791 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3917790 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgat |
3917691 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3917690 |
ttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataac |
3917591 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3917590 |
cagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
3917545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 26812332 - 26811987
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26812332 |
agagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
26812233 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26812232 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgat |
26812133 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26812132 |
ttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataac |
26812033 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26812032 |
cagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
26811987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 26821799 - 26821454
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26821799 |
agagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
26821700 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26821699 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgat |
26821600 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26821599 |
ttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataac |
26821500 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26821499 |
cagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
26821454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 54690277 - 54690622
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
54690277 |
agagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagctttcaaaactcttgcttatgaccttc |
54690376 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
54690377 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgat |
54690476 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
54690477 |
ttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataac |
54690576 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54690577 |
cagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
54690622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 54699708 - 54700053
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
54699708 |
agagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagctttcaaaactcttgcttatgaccttc |
54699807 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
54699808 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgat |
54699907 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
54699908 |
ttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataac |
54700007 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54700008 |
cagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
54700053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 37058911 - 37058566
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37058911 |
agagagcttggaatttgctttgtttgcgaagagctctgtttgtagtgatgattttcacttagagagatattagcttgcaaaactcttgcttatgaccttc |
37058812 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37058811 |
aaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcaattgat |
37058712 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37058711 |
ttctcttttcttctttaaaatagccagaacgttctcaaaatgttctttctgatttgcctggctttgaaagcactgttgttttgcttgcgcatgagataac |
37058612 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37058611 |
cagctgtaatgagctgtataactttgtgcccacttctgatgatgtc |
37058566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 15843261 - 15843605
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15843261 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcacttagagagatattagcttgcaaaactcttgcttatgaccttc |
15843360 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||| |
|
|
| T |
15843361 |
aaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatagagctgttggacacgttttttatagctgttcaaagtctcaattgat |
15843460 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
15843461 |
ttctcttttcttctttaaaatagccataacgttctcataatgttctttctgatttgcctggctttgaaagcactgttgc-ttgcttgcgcatgagataac |
15843559 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| | ||||||||||| |
|
|
| T |
15843560 |
cagctgtaatgagctgtataatttgctgcccaatgctgatgatgtc |
15843605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 28352085 - 28352430
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28352085 |
agagagcttggaatttgctttgtttgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
28352184 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28352185 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgat |
28352284 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28352285 |
ttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataac |
28352384 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28352385 |
cagctgtgatgagttgtataacttgcagcccacttctgatgatgtc |
28352430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 28368018 - 28368362
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28368018 |
agagagcttggaatttgctttgtttgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
28368117 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28368118 |
aaaggcccttgtatttataggtgaggagtgtcttggt-accaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgat |
28368216 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28368217 |
ttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataac |
28368316 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28368317 |
cagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
28368362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 28375836 - 28376180
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28375836 |
agagagcttggaatttgctttgtttgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
28375935 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28375936 |
aaaggcccttgtatttataggtgaggagtgtcttggt-accaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgat |
28376034 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28376035 |
ttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataac |
28376134 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28376135 |
cagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
28376180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 28383658 - 28384002
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28383658 |
agagagcttggaatttgctttgtttgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
28383757 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28383758 |
aaaggcccttgtatttataggtgaggagtgtcttggt-accaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgat |
28383856 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28383857 |
ttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataac |
28383956 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28383957 |
cagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
28384002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 24 - 346
Target Start/End: Original strand, 38529524 - 38529846
Alignment:
| Q |
24 |
ttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtg |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| | |
|
|
| T |
38529524 |
ttgcgaagagctttgtttgtagtgatgattttcacttagagagatattagcttgcaaaactcttgcttataatcttcaaaggcccttgtatttataggcg |
38529623 |
T |
|
| Q |
124 |
aggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttc-tcttatcttctttaaaata |
222 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| |||||||||||||| |||||||| | || |||||||||||||| |
|
|
| T |
38529624 |
aggagtgtcttggtgatcaagggagaaaatagagttgttggacacgttttttatagttgtccaaagtctcaattgatttctttttttcttctttaaaata |
38529723 |
T |
|
| Q |
223 |
gccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataac |
322 |
Q |
| |
|
|||| | ||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| ||| |||| |
|
|
| T |
38529724 |
gccagaccgttctcagaatgttctttctgaattgtctgactttgaaagcactgttgc-ttgcttgcgcgtgagagaaccagctgtaatgagttgtttaac |
38529822 |
T |
|
| Q |
323 |
ttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
||| ||||| | |||||||||| |
|
|
| T |
38529823 |
ttgttgcccaatgttgatgatgtc |
38529846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 4951420 - 4951164
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagaga-tattagcttgcaaaact-cttgcttatgacct |
98 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||| ||||||||||||| |||||||||||| |||||| |||| ||||||||||| || ||| | |||| |
|
|
| T |
4951420 |
agagaacttggaatttgctttgtttgcaaagagttttgtttgtagtggtgattttcactt-gagagaatatttacttgcaaaacttctatctt-taacct |
4951323 |
T |
|
| Q |
99 |
tcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttg |
198 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||| ||| |
|
|
| T |
4951322 |
tcaaaaccacttgtatttataggtgaggagtgtcttggtgatcaagggagaaactagagttgttggacacgtttttgataactgtctaaagtctcaattg |
4951223 |
T |
|
| Q |
199 |
atttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgc |
257 |
Q |
| |
|
||||||||| ||||||| ||||||| | |||||||||| |||||| | |||||||||| |
|
|
| T |
4951222 |
atttctcttttcttcttaaaaataggaagaacgttctcataatgttatgtctgatttgc |
4951164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 219
Target Start/End: Original strand, 7784561 - 7784738
Alignment:
| Q |
42 |
gtagtgatgattttcactttgagaga-tattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgac |
140 |
Q |
| |
|
||||||||||||||||||| |||||| || | |||| ||||||||| ||| ||||||| | | |||||||||||||||||| |||| |||||||| |
|
|
| T |
7784561 |
gtagtgatgattttcactt-gagagaatacttgcttttaaaactcttactttcaaccttcataaccacttgtatttataggtgagcagtgccttggtgat |
7784659 |
T |
|
| Q |
141 |
caagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttatcttctttaaa |
219 |
Q |
| |
|
|||| | |||||||| | ||||||||| ||||||| |||| ||||||| ||| |||||||| ||| ||||||||||| |
|
|
| T |
7784660 |
caagagtgaaaatagtgttgttggacatgtttttggcagctttccaaagcttcaattgatttcacttttcttctttaaa |
7784738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 27169196 - 27169026
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagaga-tattagcttgcaaaactcttgcttatgacctt |
99 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||| |||||| |||||||||||||||||||| |||||| | | ||| |||||||||| || ||||| |
|
|
| T |
27169196 |
agagagcttgaaatttt-tttgtttgtgaagaactttgtatgtagtgatgattttcactt-gagagaatgcttactttcaaaactcttatatagaacctt |
27169099 |
T |
|
| Q |
100 |
caaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgttt |
172 |
Q |
| |
|
| | | ||||| ||||||||||||||||| |||||||| |||| | |||||||||| |||||||||||||| |
|
|
| T |
27169098 |
ctagaccacttgtgtttataggtgaggagtgacttggtgatcaagagtgaaaatagaggtgttggacacgttt |
27169026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0482 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: scaffold0482
Description:
Target: scaffold0482; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 3357 - 3012
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3357 |
agagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgacagatattagcttacaaaactcttgcttatgaccttc |
3258 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
3257 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtatcttttgat |
3158 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3157 |
ttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
3058 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3057 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
3012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 7789442 - 7789787
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7789442 |
agagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgacagatattagcttacaaaactcttgcttatgaccttc |
7789541 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
7789542 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtatcttttgat |
7789641 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7789642 |
ttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
7789741 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7789742 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
7789787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 20713894 - 20713818
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttg |
77 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20713894 |
agagagcttggaattttctttgtttgcgaagagctttgtttgtagtgatgattttcacttagagagatattagcttg |
20713818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 15827462 - 15827408
Alignment:
| Q |
5 |
agcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactt |
60 |
Q |
| |
|
||||||||||||| |||||||| ||| | |||||| |||||||||||||||||||| |
|
|
| T |
15827462 |
agcttggaatttg-tttgtttgtgaaaaactttgtatgtagtgatgattttcactt |
15827408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 15833778 - 15833720
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactt |
60 |
Q |
| |
|
|||| ||||| |||||| |||||||| || ||||||||| |||||||||||||||||||| |
|
|
| T |
15833778 |
agagggcttgcaatttg-tttgtttgtgaggagctttgtatgtagtgatgattttcactt |
15833720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 33 - 346
Target Start/End: Original strand, 31203 - 31516
Alignment:
| Q |
33 |
gctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtc |
132 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31203 |
gctttgtttgtagtgatgattttcacttagagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtc |
31302 |
T |
|
| Q |
133 |
ttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttatcttctttaaaatagccataacgt |
232 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
31303 |
ttggtgaacaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgt |
31402 |
T |
|
| Q |
233 |
tctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataacttgcagccca |
332 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31403 |
tctcagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcacatgagataaccagctgtaatgagctgtataacttgctgccca |
31502 |
T |
|
| Q |
333 |
cttctgatgatgtc |
346 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
31503 |
cttctgatgatgtc |
31516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 9870 - 9559
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagaga-tattagcttgcaaaactcttgcttatgacctt |
99 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||| ||| |||||||||||| | | ||||| |
|
|
| T |
9870 |
agagagcttgaaatttgctttgtttgcgaagagctttgtttgtagtgatgtttttcactt-gagagaatattttctttcaaaactcttgcctttaacctt |
9772 |
T |
|
| Q |
100 |
caaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttga |
199 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||| |||||| |||||||||| || ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9771 |
caaaactatttgtatatataggtgaggagtgtcttggtgatcaagggtgaaaatagagttgatggacacatttttgatagctgtccaaagtctcatttgt |
9672 |
T |
|
| Q |
200 |
tttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataa |
299 |
Q |
| |
|
|||| ||| ||||||| |||||||| | ||||||||||||||||||| |||||||||||| ||||| || ||||||| ||||||||| ||| | || |
|
|
| T |
9671 |
tttcacttttcttcttaaaaatagctagaacgttctcagaatgttctgtctgatttgcctagctttgcttgctctgttgc-ttgcttgcgagtgaaagaa |
9573 |
T |
|
| Q |
300 |
ccagctgtaatgag |
313 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
9572 |
ccagctataatgag |
9559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 37 - 346
Target Start/End: Complemental strand, 413086 - 412777
Alignment:
| Q |
37 |
tgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttgg |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
413086 |
tgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttgg |
412987 |
T |
|
| Q |
137 |
tgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttatcttctttaaaatagccataacgttctc |
236 |
Q |
| |
|
||| ||||||||||||||||| |||||||| | ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
412986 |
tgatcaagggagaaaatagagttgttggactcttttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctc |
412887 |
T |
|
| Q |
237 |
agaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataacttgcagcccacttc |
336 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
412886 |
ataatgttctttctgatttgtctgactttgaaagcactattgctttgcttgcacatgagataaccagctgtaatgagctgtataacttgctgcccacttc |
412787 |
T |
|
| Q |
337 |
tgatgatgtc |
346 |
Q |
| |
|
|||||||||| |
|
|
| T |
412786 |
tgatgatgtc |
412777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0233 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: scaffold0233
Description:
Target: scaffold0233; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 33 - 346
Target Start/End: Original strand, 26500 - 26812
Alignment:
| Q |
33 |
gctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtc |
132 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26500 |
gctttgtttgtagtgatgattttcacttagagagatattagcttgcaaaactcttacttatgaccttcaaaggcccttgtatttataggtgaggagtgtc |
26599 |
T |
|
| Q |
133 |
ttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttatcttctttaaaatagccataacgt |
232 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||| |||||||||||| |||||||||||| |||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
26600 |
ttggtgatcaagggagaaaatagagatgttggacacatttttgatagctatccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgt |
26699 |
T |
|
| Q |
233 |
tctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataacttgcagccca |
332 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||| ||| |||||||||| ||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
26700 |
tctcagaatgttctttctgatttgtctggctttgaaagcactgttgc-ttgtatgcgcatgagttaatcagctgtaatgagctgtataacttgctgccca |
26798 |
T |
|
| Q |
333 |
cttctgatgatgtc |
346 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
26799 |
atgctgatgatgtc |
26812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 24023105 - 24023445
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||| |||||| |
|
|
| T |
24023105 |
agagagcttggaatttgctttatttgcgaagagctttgtttgtagtgatgattttcacttagagagatattagcttgcaaaagtcttggttataaccttc |
24023204 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
24023205 |
aaaagcccttgtatttataggtgaggagtgtcttagtgatcaagggagaaaatagagttgttggacacgtttttgatagctatccaaagtctcaattgat |
24023304 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||| |||||||||| ||||| |||||| |||||||||||||||||||||| ||||||| ||||| ||| |
|
|
| T |
24023305 |
ttctcttttcttctttaaaatagccagaacgttcttagaatgttctgtctgaattgccttactttgaaagcactgttgcttt-cttgcgcgtgagagaac |
24023403 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatga |
342 |
Q |
| |
|
|| |||||||||||||| ||||||| || || ||||||||| |
|
|
| T |
24023404 |
caactgtaatgagctgtttaacttgtcgctcaattctgatga |
24023445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 31710829 - 31711162
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31710829 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcacttagagagatattagcttgcaaaactcttacttatgaccttc |
31710928 |
T |
|
| Q |
101 |
aaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| |||||||||||| |||||||||||||| ||||| |
|
|
| T |
31710929 |
aaaggcccttgtatttataggtgaggagtgtcttggtgatcaagtgagaaaatagagttgttggacgcgtttttgatagttgtccaaagtctcaattgat |
31711028 |
T |
|
| Q |
201 |
ttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||| ||||||| |||||||| |||||||||||||||||||| |||| |||||||||||||||||| |||||||||| ||||| ||| |
|
|
| T |
31711029 |
ttctcttttcttcttaaaaatagc-----------cagaatgttctttctgattttcctggctttgaaagcactgttgc-ttgcttgcgcgtgagagaac |
31711116 |
T |
|
| Q |
301 |
cagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
||| ||||||||||||||||||||| ||||| | ||||||||||| |
|
|
| T |
31711117 |
cagttgtaatgagctgtataacttgttgcccaatgctgatgatgtc |
31711162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 8 - 281
Target Start/End: Complemental strand, 14272873 - 14272600
Alignment:
| Q |
8 |
ttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagaga-tattagcttgcaaaactcttgcttatgaccttcaaaggc |
106 |
Q |
| |
|
||||| |||| |||||||| |||||| ||||| ||||||||||||||||| || ||||| | || |||| |||||||||| | | | |||||||||| | |
|
|
| T |
14272873 |
ttggagtttgttttgtttgtgaagagttttgtatgtagtgatgattttca-ttcaagagaatgtttgctttcaaaactcttacctttaaccttcaaagac |
14272775 |
T |
|
| Q |
107 |
ccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctct |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14272774 |
ccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcaattgatttctct |
14272675 |
T |
|
| Q |
207 |
tatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctt |
281 |
Q |
| |
|
| ||| ||| ||||||||| |||||| |||||||||||| ||||| |||||| |||||||||||| |||||||| |
|
|
| T |
14272674 |
tttctacttataaatagccagaacgttttcagaatgttctgtctgaattgcctaactttgaaagcattgttgctt |
14272600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 15810344 - 15810688
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagaga-tattagcttgcaaaactcttgcttatgacctt |
99 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||| |||||| |||| ||| |||||||||||| | | | || |
|
|
| T |
15810344 |
agagagcttgaaatttgctttgtttgcgaggagctttgtttgtagtgatgtttttcactt-gagagaatattttctttcaaaactcttgcctttaaaatt |
15810442 |
T |
|
| Q |
100 |
caaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttga |
199 |
Q |
| |
|
|||| | ||||||||||||||||| |||||||||||||| ||| || | |||||||| |||||||||| |||||||||||||||||||||| | |||| |
|
|
| T |
15810443 |
caaaaccacttgtatttataggtgatgagtgtcttggtgatcaatggtgcaaatagagttgttggacacatttttgatagctgtccaaagtcctaattga |
15810542 |
T |
|
| Q |
200 |
tttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataa |
299 |
Q |
| |
|
|||| || ||||||| ||||||| || || | |||||||||||| | |||||||||| | |||||| |||||||||| ||||||||| ||||| || |
|
|
| T |
15810543 |
tttcatttttcttcttaaaaatagacagaatgatctcagaatgttatgtctgatttgcataactttgcttgcactgttgc-ttgcttgcgagtgagagaa |
15810641 |
T |
|
| Q |
300 |
ccagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
346 |
Q |
| |
|
|||||||||||||||||| | ||||| || || ||||||| ||||| |
|
|
| T |
15810642 |
ccagctgtaatgagctgttttacttgttgctcaattctgattatgtc |
15810688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 95 - 260
Target Start/End: Original strand, 41000835 - 41001003
Alignment:
| Q |
95 |
accttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacg---tttttgatagctgtccaaagtc |
191 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||| |||||||| |||| | |||||||||| ||||||||||| ||||| |||| ||||||||||| |
|
|
| T |
41000835 |
accttcaaaaccacttgtatttataggtgaggagtgccttggtgatcaagagtgaaaatagagatgttggacacgtttttttttatagatgtccaaagtc |
41000934 |
T |
|
| Q |
192 |
tcatttgatttctcttatcttctttaaaatagccataacgttctcagaatgttctttctgatttgcctg |
260 |
Q |
| |
|
|||||||||||| ||| ||||||| ||| | | || || | |||||||||||| | ||||||||||||| |
|
|
| T |
41000935 |
tcatttgatttcacttttcttcttaaaattgggcagaaagatctcagaatgttatgtctgatttgcctg |
41001003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 40999396 - 40999455
Alignment:
| Q |
1 |
agagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactt |
60 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
40999396 |
agagagcttggaatttactttgtttgcgaagagctttgtatgtagtgatgtttttcactt |
40999455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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