View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12993_high_13 (Length: 365)
Name: NF12993_high_13
Description: NF12993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12993_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 15 - 343
Target Start/End: Complemental strand, 11641179 - 11640851
Alignment:
| Q |
15 |
acatcatcaagcacaattaggtacctgcttctctgaagcaaatccttaatcaactctttcagcttgtcacttttcatcctttcaactgcttctggaactg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11641179 |
acatcatcaagcacaattaggtacctgcttctctgaagcaaatccttaatcaactctttcagcttgtcacttttcatcctttcaactgcttctggaactg |
11641080 |
T |
|
| Q |
115 |
gttttccgatgagaatatgaatctgttcaacaaggtctttaagcaactcttccattttgaaagattgagagagattaacccaagcatgaatcctaaaacg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11641079 |
gttttccgatgagaatatgaatctgttcaacaaggtctttaagcaactcttccattttgaaagattgagagagattaacccaagcatgaatcctaaaacg |
11640980 |
T |
|
| Q |
215 |
cttcttgacttttggatcatcatagacttgttttgctattgttgtcttccctaaacctcccataccataaatggaaatcactgccctatttgattcatct |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11640979 |
cttcttgacttttggatcatcatagacttgttttgctattgttgtcttccctaaacctcccataccataaatggaaatcacagccctatttgattcatct |
11640880 |
T |
|
| Q |
315 |
ttgaaaagcaaatcacagagctgcttctt |
343 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
11640879 |
ttgaaaagcaaatcacagagctgcttctt |
11640851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 15 - 343
Target Start/End: Complemental strand, 11622688 - 11622360
Alignment:
| Q |
15 |
acatcatcaagcacaattaggtacctgcttctctgaagcaaatccttaatcaactctttcagcttgtcacttttcatcctttcaactgcttctggaactg |
114 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||| ||| |||||||||||||| | |||| | |||||| || ||| || | ||||| | | |
|
|
| T |
11622688 |
acatcatcaagaacaattagatacctgcttctctgaagcaaattctttatcaactctttcagatcgtcattattcatcgttccaattgatcctggagcag |
11622589 |
T |
|
| Q |
115 |
gttttccgatgagaatatgaatctgttcaacaaggtctttaagcaactcttccattttgaaagattgagagagattaacccaagcatgaatcctaaaacg |
214 |
Q |
| |
|
||||||| | | | |||| | | || ||||||||||| || | |||||||||||||| |||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
11622588 |
gttttccaaaaacattatggagtttttgtacaaggtctttcagtatctcttccattttgatagattgggagagattaacccaagcatgaatcctgaaacg |
11622489 |
T |
|
| Q |
215 |
cttcttgacttttggatcatcatagacttgttttgctattgttgtcttccctaaacctcccataccataaatggaaatcactgccctatttgattcatct |
314 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||| || ||||||||| | || |||||||||||| |
|
|
| T |
11622488 |
tttcttgacttttggatcatcataaacttgttttgccaatgttgtcttccctaaacctcccataccatagatcgaaatcacttctctctttgattcatct |
11622389 |
T |
|
| Q |
315 |
ttgaaaagcaaatcacagagctgcttctt |
343 |
Q |
| |
|
||||||||||||||| ||||||||||| |
|
|
| T |
11622388 |
ttgaaaagcaaatcagtcagctgcttctt |
11622360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 144 - 343
Target Start/End: Original strand, 11604902 - 11605101
Alignment:
| Q |
144 |
acaaggtctttaagcaactcttccattttgaaagattgagagagattaacccaagcatgaatcctaaaacgcttcttgacttttggatcatcatagactt |
243 |
Q |
| |
|
||||||||||| || | |||||||||||||| |||||| |||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||| |
|
|
| T |
11604902 |
acaaggtctttcagtatctcttccattttgatagattgggagagattaacccaagcatgaatcctgaaatgtttcttgacttttggatcatcatagactt |
11605001 |
T |
|
| Q |
244 |
gttttgctattgttgtcttccctaaacctcccataccataaatggaaatcactgccctatttgattcatctttgaaaagcaaatcacagagctgcttctt |
343 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||| || ||||||||| | || |||| |||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
11605002 |
gttttgccaatgttgtcttccctaaacctcccataccatagattgaaatcacttctctctttggttcatcattgaaaagcaaatcacacagctgcttctt |
11605101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University