View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12993_high_23 (Length: 255)
Name: NF12993_high_23
Description: NF12993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12993_high_23 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] scaffold0415 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 2830455 - 2830709
Alignment:
| Q |
1 |
tcagttttagttgactgaagctcttcttggactttatgcagcatttcttccagtatagttttctgcgatcgtagttcacatgcttctgtcaaagctctca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2830455 |
tcagttttagttgactgaagctcttcttggactttatgcagcatttcttccagtatagttttctgcgatcgtagttcacatgcttctgtcaaagctctca |
2830554 |
T |
|
| Q |
101 |
aggtagccttctcattttcatcaaaggtagaagtcatttgcattgagagtctctggaattcctcttgaagcctttcagctgtattagcatttttcagtct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2830555 |
aggtagccttctcattttcatcaaaggtagaagtcatttgcattgagagtctctggaattcctcttgaagcctttcagctgtattagcatttttcagtct |
2830654 |
T |
|
| Q |
201 |
ggtctttcgcaacgcatcctcggcttggatggctctttgctcttgctcgactttt |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2830655 |
ggtctttcgcaacgcatcctcggcttggatggctctttgctcttgctcgactttt |
2830709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 4668 - 4439
Alignment:
| Q |
18 |
aagctcttcttggactttatgcagcatttcttccagtatagttttctgcgatcgtagttcacatgcttctgtcaaagctctcaaggtagccttctcattt |
117 |
Q |
| |
|
||||||||||| ||||||| |||||||||| ||||| | | |||||| || ||||||| ||||||||||| |||||| ||||||| |||||||| |
|
|
| T |
4668 |
aagctcttctttgactttacgcagcatttcctccagcagtctcttctgcacacgaagttcacttgcttctgtcagcgctctcctggtagccgtctcattt |
4569 |
T |
|
| Q |
118 |
tcatcaaaggtagaagtcatttgcattgagagtctctggaattcctcttgaagcctttcagctgtattagcatttttcagtctggtctttcgcaacgcat |
217 |
Q |
| |
|
||||||| |||| | ||| |||||||| || || | ||||| ||||||||||| || || |||||||||||||| |||||||| |||||||| || | |
|
|
| T |
4568 |
gcatcaaatgtagtggccatctgcattgatagccttttaaattcttcttgaagcctctctgcagtattagcatttttaagtctggtgtttcgcaaagctt |
4469 |
T |
|
| Q |
218 |
cctcggcttggatggctctttgctcttgct |
247 |
Q |
| |
|
|||| ||| | |||||||||||||| |||| |
|
|
| T |
4468 |
cctcagctcgaatggctctttgctcctgct |
4439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 40800037 - 40799808
Alignment:
| Q |
18 |
aagctcttcttggactttatgcagcatttcttccagtatagttttctgcgatcgtagttcacatgcttctgtcaaagctctcaaggtagccttctcattt |
117 |
Q |
| |
|
||||||||||| ||||||| |||||||||| ||||| | | |||||| || ||||||| ||||||||||| |||||| ||||||| |||||||| |
|
|
| T |
40800037 |
aagctcttctttgactttacgcagcatttcctccagcagtctcttctgcacacgaagttcacttgcttctgtcagcgctctcctggtagccgtctcattt |
40799938 |
T |
|
| Q |
118 |
tcatcaaaggtagaagtcatttgcattgagagtctctggaattcctcttgaagcctttcagctgtattagcatttttcagtctggtctttcgcaacgcat |
217 |
Q |
| |
|
||||||| |||| | ||| |||||||| || || | ||||| ||||||||||| || || |||||||||||||| |||||||| |||||||| || | |
|
|
| T |
40799937 |
gcatcaaatgtagtggccatctgcattgatagccttttaaattcttcttgaagcctctctgcagtattagcatttttaagtctggtgtttcgcaaagctt |
40799838 |
T |
|
| Q |
218 |
cctcggcttggatggctctttgctcttgct |
247 |
Q |
| |
|
|||| ||| | |||||||||||||| |||| |
|
|
| T |
40799837 |
cctcagctcgaatggctctttgctcctgct |
40799808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University