View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12993_high_24 (Length: 251)

Name: NF12993_high_24
Description: NF12993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12993_high_24
NF12993_high_24
[»] chr2 (10 HSPs)
chr2 (1-232)||(30181519-30181748)
chr2 (3-219)||(30282107-30282320)
chr2 (106-235)||(30254517-30254646)
chr2 (46-225)||(30070629-30070806)
chr2 (29-235)||(30177390-30177592)
chr2 (32-212)||(30131178-30131360)
chr2 (99-212)||(30025519-30025632)
chr2 (99-212)||(30035065-30035178)
chr2 (99-212)||(30116490-30116603)
chr2 (99-212)||(30229203-30229316)


Alignment Details
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 30181519 - 30181748
Alignment:
Q  1 acgaatcatccactcgagccttcaatcaaattttgaggacaatcacaatcatccttagagttctggatatccatgaacaaga-aaaagaaacagcaatta 99  Q
    |||||||||| ||| |||||||||||||| |||||||||||| ||||||||||||||||| ||||||||| ||||||||||| |||| |||||||||       
T  30181519 acgaatcatctacttgagccttcaatcaagttttgaggacaaacacaatcatccttagagctctggatattcatgaacaagagaaaaaaaacagcaaa-- 30181616  T
Q  100 atgtgggaatgcaagccataacattt-gaatcatgatcggagataattgattttgtatatattaccattttcgctactagttttttgatagtagtgttaa 198  Q
      ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||| |||||||||||||    
T  30181617 --gtgagaatgcaagccataacattttgaatcatgatcggagataattgattttgtatatattaccgttttcgctactaattgttttatagtagtgttaa 30181714  T
Q  199 cgtcaccattccaatgccatttatcttcttccct 232  Q
    | ||||||||||||||||||| ||||||||||||    
T  30181715 catcaccattccaatgccattcatcttcttccct 30181748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 219
Target Start/End: Complemental strand, 30282320 - 30282107
Alignment:
Q  3 gaatcatccactcgagccttcaatcaaattttgaggacaatcacaatcatccttagagttctggatatccatgaacaagaaaaagaaacagcaattaatg 102  Q
    |||| ||| ||| ||||||||| ||||||||||||||||| | || |||||||||||||||||||||| ||| |||||||||||| |||| |    | ||    
T  30282320 gaattatcgacttgagccttcattcaaattttgaggacaaactcattcatccttagagttctggatattcataaacaagaaaaagcaacaac----agtg 30282225  T
Q  103 tgggaatgcaagccataacatttgaatcatgatcggagataattgattttgtatatattacc-attttcgctactagttttttgatagtagtgttaacgt 201  Q
    || |||||||| | ||| ||||||||||||||| |||||| ||  |||| ||| | ||||||  |||||||  | | |||| | |||||||| |||| ||    
T  30282224 tgagaatgcaaacaatagcatttgaatcatgattggagatgatcaatttggtaaacattaccttttttcgcagcaaattttcttatagtagtattaatgt 30282125  T
Q  202 caccattccaatgccatt 219  Q
    ||||||||||||| ||||    
T  30282124 caccattccaatgacatt 30282107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 235
Target Start/End: Complemental strand, 30254646 - 30254517
Alignment:
Q  106 gaatgcaagccataacatttgaatcatgatcggagataattgattttgtatatattaccattttcgctactagttttttgatagtagtgttaacgtcacc 205  Q
    |||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||| |||||   |||| | || | ||| |||| ||||||    
T  30254646 gaatgcaagccataacatttgaattatgatcggagataatcaattttgtatatattaccattttagctacatattttcttattgcagtattaaggtcacc 30254547  T
Q  206 attccaatgccatttatcttcttcccttac 235  Q
     ||||||||||| | ||||| |||| ||||    
T  30254546 gttccaatgccagtcatcttgttcctttac 30254517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 225
Target Start/End: Complemental strand, 30070806 - 30070629
Alignment:
Q  46 caatcatccttagagttctggatatccatgaacaagaaaaagaaacagcaattaatgtgggaatgcaa-gccataacatttgaatcatgatcggagataa 144  Q
    ||||||||||||||||||||||||| ||| |||||||||||| |    |||  |||||| |||||||| || |||||| |||| |  |||| ||||||||    
T  30070806 caatcatccttagagttctggatattcataaacaagaaaaagca----caac-aatgtgagaatgcaaagcgataacaattgatttgtgattggagataa 30070712  T
Q  145 ttgattttgtatata--ttaccattttcgctactagttttttgatagtagtgttaacgtcaccattccaatgccatttatctt 225  Q
    | ||||||||||| |  ||||| |||| ||||| | |||| | |||||||| |||| |||||||||||||||||||| |||||    
T  30070711 tcgattttgtatagacattaccgtttttgctacaaattttcttatagtagtattaatgtcaccattccaatgccattcatctt 30070629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 235
Target Start/End: Complemental strand, 30177592 - 30177390
Alignment:
Q  29 aattttgaggacaatcacaatcatccttagagttctggatatccatgaacaagaaaaagaaacagcaattaatgtgggaatgcaagccataacatttgaa 128  Q
    |||||||||||||| | |||||| |||||||||||||||||  |   |||||||||| | |    |||  |||||| |||||||||| ||||||||||||    
T  30177592 aattttgaggacaaactcaatcacccttagagttctggatactcgcaaacaagaaaaggca----caac-aatgtgagaatgcaagctataacatttgaa 30177498  T
Q  129 tcatgatcggagataattgattttgtat--atattaccattttcgctactagttttttgatagtagtgttaacgtcaccattccaatgccatttatcttc 226  Q
    ||||||| |||||  || ||||||||||  | ||||||  ||| ||||| | |||| | |||||||| |||| |||||||||||||||||||| |||| |    
T  30177497 tcatgattggaga-catagattttgtatagacattaccggtttagctacaaattttcttatagtagtattaaggtcaccattccaatgccattcatctcc 30177399  T
Q  227 ttcccttac 235  Q
    |||| ||||    
T  30177398 ttcctttac 30177390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 212
Target Start/End: Original strand, 30131178 - 30131360
Alignment:
Q  32 tttgaggacaatcacaatcatccttagagttctggatatccatgaacaagaaaaagaaacagcaa--ttaatgtgggaatgcaagccataacatttgaat 129  Q
    ||||||||||| |  |||||||| |||||||||| |||| ||  || || ||||| |||  ||||  | |||||| ||||| ||||||||| | ||||      
T  30131178 tttgaggacaaacctaatcatccgtagagttctgtatattcagaaaaaaaaaaaaaaaaaggcaacatcaatgtgagaatggaagccataaaagttgaga 30131277  T
Q  130 catgatcggagataattgattttgtatatattaccattttcgctactagttttttgatagtagtgttaacgtcaccattccaa 212  Q
    ||| || ||| |||||  |||||||||  |||||| ||||| || | | |||||| ||||||||||||| |||||||||||||    
T  30131278 cataattggatataatcaattttgtatgcattacccttttcactgcaattttttttatagtagtgttaaggtcaccattccaa 30131360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 212
Target Start/End: Complemental strand, 30025632 - 30025519
Alignment:
Q  99 aatgtgggaatgcaagccataacatttgaatcatgatcggagataattgattttgtatatattaccattttcgctactagttttttgatagtagtgttaa 198  Q
    |||||| ||||| ||||||||| | ||||  ||| || ||| |||||  |||||||||  |||||| ||||| || | | |||||| |||||||||||||    
T  30025632 aatgtgagaatggaagccataaaagttgagacataattggatataatcaattttgtatgcattacccttttcactgcaattttttttatagtagtgttaa 30025533  T
Q  199 cgtcaccattccaa 212  Q
     |||||||||||||    
T  30025532 ggtcaccattccaa 30025519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 212
Target Start/End: Original strand, 30035065 - 30035178
Alignment:
Q  99 aatgtgggaatgcaagccataacatttgaatcatgatcggagataattgattttgtatatattaccattttcgctactagttttttgatagtagtgttaa 198  Q
    |||||| ||||| ||||||||| | ||||  ||| || ||| |||||  |||||||||  |||||| ||||| || | | |||||| |||||||||||||    
T  30035065 aatgtgagaatggaagccataaaagttgagacataattggatataatcaattttgtatgcattacccttttcactgcaattttttttatagtagtgttaa 30035164  T
Q  199 cgtcaccattccaa 212  Q
     |||||||||||||    
T  30035165 ggtcaccattccaa 30035178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 212
Target Start/End: Original strand, 30116490 - 30116603
Alignment:
Q  99 aatgtgggaatgcaagccataacatttgaatcatgatcggagataattgattttgtatatattaccattttcgctactagttttttgatagtagtgttaa 198  Q
    |||||| ||||| ||||||||| | ||||  ||| || ||| |||||  |||||||||  |||||| ||||| || | | |||||| |||||||||||||    
T  30116490 aatgtgagaatggaagccataaaagttgagacataattggatataatcaattttgtatgcattacccttttcactgcaattttttttatagtagtgttaa 30116589  T
Q  199 cgtcaccattccaa 212  Q
     |||||||||||||    
T  30116590 ggtcaccattccaa 30116603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 212
Target Start/End: Original strand, 30229203 - 30229316
Alignment:
Q  99 aatgtgggaatgcaagccataacatttgaatcatgatcggagataattgattttgtatatattaccattttcgctactagttttttgatagtagtgttaa 198  Q
    |||||| ||||| ||||||||| | ||||  ||| || ||| |||||  |||||||||  |||||| ||||| || | | |||||| |||||||||||||    
T  30229203 aatgtgagaatggaagccataaaagttgagacataattggatataatcaattttgtatgcattacccttttcactgcaattttttttatagtagtgttaa 30229302  T
Q  199 cgtcaccattccaa 212  Q
     |||||||||||||    
T  30229303 ggtcaccattccaa 30229316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University