View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12993_low_10 (Length: 422)

Name: NF12993_low_10
Description: NF12993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12993_low_10
NF12993_low_10
[»] chr1 (5 HSPs)
chr1 (14-403)||(29468541-29468931)
chr1 (14-393)||(29473665-29474045)
chr1 (322-401)||(29422567-29422646)
chr1 (322-380)||(29454104-29454162)
chr1 (319-380)||(29444097-29444158)
[»] chr4 (1 HSPs)
chr4 (48-245)||(18148254-18148451)
[»] chr3 (1 HSPs)
chr3 (48-245)||(17511989-17512186)
[»] chr2 (4 HSPs)
chr2 (163-245)||(36798529-36798611)
chr2 (51-106)||(45212571-45212626)
chr2 (311-380)||(12019642-12019710)
chr2 (311-380)||(12006995-12007064)
[»] scaffold0002 (1 HSPs)
scaffold0002 (87-228)||(226550-226691)
[»] chr6 (1 HSPs)
chr6 (204-245)||(7759833-7759874)


Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 403
Target Start/End: Complemental strand, 29468931 - 29468541
Alignment:
Q  14 gaagccatccctgcaaaaaagaaatacatgtgtcacgtgattattccaccaaaaagttttctatcagttcaagatgatcaatatgtaaaatcagaacaag 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  29468931 gaagccatccctgcaaaaaagaaatacatgtgtcacgtgattattccaccaaaatgttttctatcagttcaagatgataaatatgtaaaatcagaacaag 29468832  T
Q  114 taattgctgagatccgcacaggaacatagactttt-aatttgaaagaaagggttcgaaaacatatttattccgactcagaagaggaaatacattggagta 212  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  29468831 taattgctgagatccgcacaggaacatagactttttaatttgaaagaaagggttcgaaaacatatttatttcgattcagaagaggaaatacattggagta 29468732  T
Q  213 ctgatgtgtaccatgcatctgaatttttctataatcgcaagaggtaagcaagctcattaatatcacaaatgaatggagatnnnnnnnngannnnnnnnga 312  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||        ||    
T  29468731 ccgatgtgtaccatgcatctgaatttttctataatcgcaagaggtaagcaagctcattaatatcacaaatgaatggagataaaaaaaagattttttttga 29468632  T
Q  313 aatgaattatacatagatttggaataatctcattgcatgcaaatttctacacaacaatgttcttatccacatagataccatgacagggtcg 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29468631 aatgaattatacatagatttggaataatctcattgcatgcaaatttctacacaacaatgttcttatccacatagatgccatgacagggtcg 29468541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 14 - 393
Target Start/End: Complemental strand, 29474045 - 29473665
Alignment:
Q  14 gaagccatccctgcaaaaaagaaatacatgtgtcacgtgattattccaccaaaaagttttctatcagttcaagatgatcaatatgtaaaatcagaacaag 113  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29474045 gaagccatccctgcaaaaaacaaatacatgtgtcacgtgattattccaccaaaaagttttctatcagttcaagatgatcaatatgtaaaatcagaacaag 29473946  T
Q  114 taattgctgagatccgcacaggaacatagactttt-aatttgaaagaaagggttcgaaaacatatttattccgactcagaagaggaaatacattggagta 212  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  29473945 taattgctgagatccgcacaggaacatagactttttaatttgaaagaaagggttcgaaaacatatttatttcgattcagaagaggaaatacattggagta 29473846  T
Q  213 ctgatgtgtaccatgcatctgaatttttctataatcgcaagaggtaagcaagctcattaatatcacaaatgaatggagatnnnnnnnngannnnnnnnga 312  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||        ||    
T  29473845 ccgatgtgtaccatgcatctgaatttttctataatcgcaagaggtaagcaagctcattaatatcacaaatgaatggagataaaaaaaagattttttttga 29473746  T
Q  313 aatgaattatacatagatttggaataatctcattgcatgcaaatttctacacaacaatgttcttatccacatagataccat 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29473745 aatgaattatacatagatttggaataatctcattgcatgcaaatttctacacaacaatgttcttatccacatagatgccat 29473665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 322 - 401
Target Start/End: Original strand, 29422567 - 29422646
Alignment:
Q  322 tacatagatttggaataatctcattgcatgcaaatttctacacaacaatgttcttatccacatagataccatgacagggt 401  Q
    ||||||||||| || |||| |||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  29422567 tacatagattttgagtaatttcattgcaggcaaatttctacccaacaatgttcttatccacatagataccacgacagggt 29422646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 322 - 380
Target Start/End: Complemental strand, 29454162 - 29454104
Alignment:
Q  322 tacatagatttggaataatctcattgcatgcaaatttctacacaacaatgttcttatcc 380  Q
    ||||||||||| || |||| |||||||| ||||||||||||||||||||||||||||||    
T  29454162 tacatagattttgagtaatttcattgcaggcaaatttctacacaacaatgttcttatcc 29454104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 319 - 380
Target Start/End: Complemental strand, 29444158 - 29444097
Alignment:
Q  319 ttatacatagatttggaataatctcattgcatgcaaatttctacacaacaatgttcttatcc 380  Q
    |||||||||||||| || |||  |||||||| ||||||||||||||||||||||| ||||||    
T  29444158 ttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaatgtttttatcc 29444097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 9e-77; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 48 - 245
Target Start/End: Complemental strand, 18148451 - 18148254
Alignment:
Q  48 acgtgattattccaccaaaaagttttctatcagttcaagatgatcaatatgtaaaatcagaacaagtaattgctgagatccgcacaggaacatagacttt 147  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||| | |||||||  |||||    
T  18148451 acgtgattattccaccaaaaagttttctattagttcaaaatgatcaatatgtaaaatcagaacaagtgattgctgagatccgcgcgggaacatctacttt 18148352  T
Q  148 taatttgaaagaaagggttcgaaaacatatttattccgactcagaagaggaaatacattggagtactgatgtgtaccatgcatctgaatttttctata 245  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||| ||||||||||||||||| |||||||| ||||    
T  18148351 taatttgaaagaaagggttcgaaaacatatttattctgactcagaaggggaaatgcattggagtaccgatgtgtaccatgcatccgaatttttgtata 18148254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 146; Significance: 9e-77; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 48 - 245
Target Start/End: Complemental strand, 17512186 - 17511989
Alignment:
Q  48 acgtgattattccaccaaaaagttttctatcagttcaagatgatcaatatgtaaaatcagaacaagtaattgctgagatccgcacaggaacatagacttt 147  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||| | |||||||  |||||    
T  17512186 acgtgattattccaccaaaaagttttctattagttcaaaatgatcaatatgtaaaatcagaacaagtgattgctgagatccgcgcgggaacatctacttt 17512087  T
Q  148 taatttgaaagaaagggttcgaaaacatatttattccgactcagaagaggaaatacattggagtactgatgtgtaccatgcatctgaatttttctata 245  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||| ||||||||||||||||| |||||||| ||||    
T  17512086 taatttgaaagaaagggttcgaaaacatatttattctgactcagaaggggaaatgcattggagtaccgatgtgtaccatgcatccgaatttttgtata 17511989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 163 - 245
Target Start/End: Original strand, 36798529 - 36798611
Alignment:
Q  163 ggttcgaaaacatatttattccgactcagaagaggaaatacattggagtactgatgtgtaccatgcatctgaatttttctata 245  Q
    ||||||||||||||||||||| |||||||||| |||||| ||||||||||| ||||||||||||||||| |||||||| ||||    
T  36798529 ggttcgaaaacatatttattctgactcagaaggggaaatgcattggagtaccgatgtgtaccatgcatccgaatttttgtata 36798611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 45212626 - 45212571
Alignment:
Q  51 tgattattccaccaaaaagttttctatcagttcaagatgatcaatatgtaaaatca 106  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  45212626 tgattattccaccaaaaagttttctattagttcaaaatgatcaatatgtaaaatca 45212571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 380
Target Start/End: Complemental strand, 12019710 - 12019642
Alignment:
Q  311 gaaatgaattatacatagatttggaataatctcattgcatgcaaatttctacacaacaatgttcttatcc 380  Q
    |||| |||||||||||||||||||| |||| |||||||| | |||||||||||||||||| |||||||||    
T  12019710 gaaaggaattatacatagatttggagtaat-tcattgcaggtaaatttctacacaacaatattcttatcc 12019642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 380
Target Start/End: Complemental strand, 12007064 - 12006995
Alignment:
Q  311 gaaatgaattatacatagatttggaataatctcattgcatgcaaatttctacacaacaatgttcttatcc 380  Q
    |||| |||||||||||||| ||||| |||| |||||  | | ||||||||||| |||||| |||||||||    
T  12007064 gaaaggaattatacatagagttggagtaatttcattaaaggtaaatttctacagaacaatattcttatcc 12006995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 87 - 228
Target Start/End: Original strand, 226550 - 226691
Alignment:
Q  87 atgatcaatatgtaaaatcagaacaagtaattgctgagatccgcacaggaacatagacttttaatttgaaagaaagggttcgaaaacatatttattccga 186  Q
    ||||||||||||||||||| |||||||||||||| ||||| ||  | ||||| |  |||||  |||| ||||||||||| | ||| ||||||||||| ||    
T  226550 atgatcaatatgtaaaatctgaacaagtaattgcggagattcgtgccggaacgtccactttacattttaaagaaagggtacaaaagcatatttattctga 226649  T
Q  187 ctcagaagaggaaatacattggagtactgatgtgtaccatgc 228  Q
     ||||| |  ||||| || |||||||||||||| ||||||||    
T  226650 atcagacggcgaaatgcactggagtactgatgtttaccatgc 226691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 7759833 - 7759874
Alignment:
Q  204 attggagtactgatgtgtaccatgcatctgaatttttctata 245  Q
    |||||||||| ||||||||||||||||| |||||||| ||||    
T  7759833 attggagtaccgatgtgtaccatgcatccgaatttttgtata 7759874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University