View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12993_low_11 (Length: 412)
Name: NF12993_low_11
Description: NF12993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12993_low_11 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 6 - 412
Target Start/End: Original strand, 7072467 - 7072854
Alignment:
| Q |
6 |
cataggtcctgaggctgatctgtgtgccgtcttgttatcttggtgcttgaggccttttatttcagccatcgtttggattgtgtctagcttatagaacaat |
105 |
Q |
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| T |
7072467 |
cataggtcctgaggctgatatgtgcgccgtcttgttatcatggtgcttgaggccttttatttcagccatcgtttggattgtgtctagcttatagaacaat |
7072566 |
T |
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| Q |
106 |
gatgaccaatgctaaccaaatgacatgtaaagaatacttttattcctccaaaaaagctttatagcagtacagacaattatgtattcaaatgtatgtatac |
205 |
Q |
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| T |
7072567 |
gatgaccaatgctaaccaaatgacatgtaaagaata-------------------gctttatagcagtacagacaattatatattcaaatgtatgtatac |
7072647 |
T |
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| Q |
206 |
tgaatcatgcctctctacaaattttgtaatgatgcaatacaaagtacaaacaggatctactattcaaagtatgatttcatgttccaaaaaacttcgatcc |
305 |
Q |
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| T |
7072648 |
tgaatcatgcctctctacaaattttgtaatgatgcaatacaaagtacaaacaggatctactattcaaagtatggtttcatgttccaaaaaacttcgatcc |
7072747 |
T |
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| Q |
306 |
ctcttccactgaacacgtattatttggaaaaacagttgcatcaccaaattccaattgctgtttaaacatgtcatactgtgaaggggttactaggctaacc |
405 |
Q |
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| T |
7072748 |
ctcttccactgaacacgtattatttggaaaaacagttgcatcaccaaattccaattgctgtttaaacatgtcatactgtgaaggggttactaggctaacc |
7072847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 306 - 412
Target Start/End: Complemental strand, 7033595 - 7033489
Alignment:
| Q |
306 |
ctcttccactgaacacgtattatttggaaaaacagttgcatcaccaaattccaattgctgtttaaacatgtcatactgtgaaggggttactaggctaacc |
405 |
Q |
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| T |
7033595 |
ctcttccactggacacatattaatcggaacaacactacgatcacgaaattccaattgctgtttaaacttgtcatattttgaaggggttactaggctaacc |
7033496 |
T |
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| Q |
406 |
ccaaacc |
412 |
Q |
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| T |
7033495 |
ccaaacc |
7033489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 7039577 - 7039511
Alignment:
| Q |
169 |
gcagtacagacaattatgtattcaaatgtatgtatactgaatcatgcctctctacaaattttgtaat |
235 |
Q |
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| T |
7039577 |
gcagtacagacaattttatatccaaatgtatgtatactgaatcatgcctctctacaaattttgtaat |
7039511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 301 - 410
Target Start/End: Complemental strand, 7039339 - 7039230
Alignment:
| Q |
301 |
gatccctcttccactgaacacgtattatttggaaaaacagttgcatcaccaaattccaattgctgtttaaacatgtcatactgtgaaggggttactaggc |
400 |
Q |
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| T |
7039339 |
gatctctctttcaccgaacacatattatttggaacaacattaccatcacgaaatgccaattgctgtttaaacttgtcataccgtgaaggggttaccaggc |
7039240 |
T |
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| Q |
401 |
taaccccaaa |
410 |
Q |
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| T |
7039239 |
taactccaaa |
7039230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 344 - 410
Target Start/End: Complemental strand, 7026177 - 7026111
Alignment:
| Q |
344 |
catcaccaaattccaattgctgtttaaacatgtcatactgtgaaggggttactaggctaaccccaaa |
410 |
Q |
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| T |
7026177 |
catcaccaaactccaatttctgtttaaacttgtcataatcggaaggtgttactaggctaactccaaa |
7026111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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