View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12993_low_12 (Length: 387)
Name: NF12993_low_12
Description: NF12993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12993_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 8e-74; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 84 - 267
Target Start/End: Complemental strand, 30181236 - 30181055
Alignment:
| Q |
84 |
cttgttttctgttattttcaaaactgatttctcctaaactttacttaaaatttaggagatgattgcttgattaagtgtgtgtgtgagatcaattgttaat |
183 |
Q |
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| T |
30181236 |
cttgttttctgttattttcaaaactgatctctcctaaactttacttaaaatataggagatgattgcttgattaagtgtgtgtg--agatcaattgttaat |
30181139 |
T |
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| Q |
184 |
tcttgagattaaaatgttgggattcaaaggcatgctacttcataagttctatgcatgttcatcattggaccgcattaagttgtt |
267 |
Q |
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| T |
30181138 |
tcttgagattaaaatgttggaattcaaagacatgctacttcagaagttccgtgcatgttcatcattggactgcattaagttgtt |
30181055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 292 - 373
Target Start/End: Complemental strand, 30181031 - 30180950
Alignment:
| Q |
292 |
aaccatactattactttcttcagtccttaaccatacgaagttaaaatgatttctcatgttttaaatagtaacatttaatttt |
373 |
Q |
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| T |
30181031 |
aaccatactgttactttcttcagtcattaaccatacgaagctaaaatgatttctcatgttttacatagtaacatttaatttt |
30180950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 147 - 251
Target Start/End: Original strand, 30255129 - 30255233
Alignment:
| Q |
147 |
tgcttgattaagtgtgtgtgtgagatcaattgttaattcttgagattaaaatgttgggattcaaaggcatgctacttcataagttctatgcatgttcatc |
246 |
Q |
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| T |
30255129 |
tgcttgattcagtgtgtttgtgtgatcgattgttaattcttgatattaaattggtgggatagaaatgcatgtttcttcagaagttttgtgcatgttggtc |
30255228 |
T |
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| Q |
247 |
attgg |
251 |
Q |
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| T |
30255229 |
attgg |
30255233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 30181322 - 30181271
Alignment:
| Q |
1 |
aactctaatggcacgaggcgtttacattcatcatcatgtatcagtgcaatga |
52 |
Q |
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| T |
30181322 |
aactcaaatggcatgaagcgtttacaatcatcatcatgtatcagtgcaatga |
30181271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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