View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12993_low_15 (Length: 348)
Name: NF12993_low_15
Description: NF12993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12993_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 20 - 338
Target Start/End: Complemental strand, 12820331 - 12820013
Alignment:
| Q |
20 |
acaaggtggtggccttttcttccaaagaggtgaaggtttgtagtttacgtgataatgtttggagaaatattagttttcatgttgttatttatcttggcat |
119 |
Q |
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| T |
12820331 |
acaaggtggtggccttttcttccaaagaggtgaaggtttgtagtttacgtgataatgtttggagaaatattagttttcatgttgttatttatcttggcat |
12820232 |
T |
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| Q |
120 |
tatgtttaatgaaggtgtgtatttgaatggcactgtttactggttttccaatccaaataagagttttaagtatagtgagaaggattttactgttgaacaa |
219 |
Q |
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| T |
12820231 |
tatgtttaatgaaggtgtgtatttgaatggcactgtttactggttttccaatccgaataagagttttaagtatagtgagaaggattttactgttgaacaa |
12820132 |
T |
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| Q |
220 |
cttatgattatctcccttgatcttagtaccgagacatacacgcgcttgttgccccctcgtgaggttgatgaagtgccagttgttcaacaaagtcttgctg |
319 |
Q |
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| T |
12820131 |
cttatgattatctcccttgatcttagtaccgagatatacacgcgcttgctgccccctcgtgaggttgatgaagtgccagttgttcaacaaagtcttgctg |
12820032 |
T |
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| Q |
320 |
tattaagggaccgcctttg |
338 |
Q |
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| T |
12820031 |
tattaagggaccgcctttg |
12820013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 297
Target Start/End: Complemental strand, 19326221 - 19326123
Alignment:
| Q |
199 |
aaggattttactgttgaacaacttatgattatctcccttgatcttagtaccgagacatacacgcgcttgttgccccctcgtgaggttgatgaagtgcca |
297 |
Q |
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| T |
19326221 |
aaggatattaccgtcgagcaatttatgattatctcccttgatcttggtactgagacatacaagcaatttcagacccctcgtggtgttgatgaagtgcca |
19326123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 19344813 - 19344751
Alignment:
| Q |
197 |
agaaggattttactgttgaacaacttatgattatctcccttgatcttagtaccgagacataca |
259 |
Q |
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| T |
19344813 |
agaaggatattactgttgggaaatttgtgattatctcccttgatcttggtaccgagacataca |
19344751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 259
Target Start/End: Original strand, 19374626 - 19374661
Alignment:
| Q |
224 |
tgattatctcccttgatcttagtaccgagacataca |
259 |
Q |
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| T |
19374626 |
tgattatctcccttgatcttggtaccgagacataca |
19374661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 24254662 - 24254602
Alignment:
| Q |
199 |
aaggattttactgttgaacaacttatgattatctcccttgatcttagtaccgagacataca |
259 |
Q |
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| T |
24254662 |
aaggatattaccgttgagcaattcatgattatctcccttgatcttggtactgagacataca |
24254602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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