View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12993_low_18 (Length: 324)
Name: NF12993_low_18
Description: NF12993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12993_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 17472110 - 17472416
Alignment:
| Q |
1 |
aagaagtcaaaccctgtatcatcatctagtattgaagctagattgtctgagagacggttgagtggttgtgtgaatgtgatgatatcttttgaaggagtaa |
100 |
Q |
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| T |
17472110 |
aagaagtcaaaccctgtatca---tctagtattgaagctagattgtctgagagacggttgagtggttgtgtgaatgtgatgacatcttgtgaagcagtaa |
17472206 |
T |
|
| Q |
101 |
tggttgaatttggtgctgttgtgcagcataactcactgctagtgttgttgctgatttcgtttgaatattcagagaattcacttctcaagtacatcattat |
200 |
Q |
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| T |
17472207 |
tggttgaatttggtgctgttgtgcagcataactcactgctagtattgttgctgatttcgtttgaatattcagagaatccacttctcaagtacatcattat |
17472306 |
T |
|
| Q |
201 |
actactatgagatatatgatgatgtgttgtaaaaagaagagtgagtgtatgtatgtattaagggaatgagcaagggtccttaattatatactcctactag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
17472307 |
actactatgagatatatgatgatgtgttgtaaaaagaagagtgagtgtatgtatgtattaagggaatgagcaagggtctttaattatatactcctactag |
17472406 |
T |
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| Q |
301 |
atgagagaga |
310 |
Q |
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|||||||||| |
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| T |
17472407 |
atgagagaga |
17472416 |
T |
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