View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12993_low_19 (Length: 282)
Name: NF12993_low_19
Description: NF12993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12993_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 31127365 - 31127093
Alignment:
| Q |
1 |
tgaagttgtatctctcccagcaagaataaagcttattacaatatcaacaacaaaagattcatctgaatgacctgaacttaaaaatcgtgatagaatatcc |
100 |
Q |
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| T |
31127365 |
tgaagttgtatctctcccagcaagaataaagcttattacaatatcaacaacaaaagattcatctgaatgacctgaacttaaaaatcgtgatagaatatcc |
31127266 |
T |
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| Q |
101 |
aatgattccaacgatgatttttcttcaagctcctgtttcttttccctaacgattcttgtggctgagtcctcttacttcagcagcagcttcttttaaccgt |
200 |
Q |
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| T |
31127265 |
aatgattccaacgatgatttttcttcaagctcctttttcttttccctaacgattcttgtggc-gagtcctcttacttcagcagcagcttcttttaaccgt |
31127167 |
T |
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| Q |
201 |
cgctctgatccaacatttaatattttcttgactttccatagaaatggaatcgctgcatttaacctctctctgct |
274 |
Q |
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| T |
31127166 |
cgctctgatccaacatttaatattttcttcactttccatagaaatggaatcgctgcatttaacctctcactgct |
31127093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 31078047 - 31077796
Alignment:
| Q |
1 |
tgaagttgtatctctcccagcaagaataaagcttattacaatatcaacaacaaaagattcatctgaatgacctgaacttaaaaatcgtgatagaatatcc |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||| || |||| || ||| |
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| T |
31078047 |
tgaagttgtatctttcccagcaagaataaagcttattacaatatcaactacaaatgattcatccgaatgacccgaacttaaaaaccgcgataaaagatca |
31077948 |
T |
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| Q |
101 |
aatgattccaacgatgatttttcttcaagctcctgtttcttttccctaacgattcttgtggctgagtcctcttacttcagcagcagcttcttttaaccgt |
200 |
Q |
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| T |
31077947 |
actgattccaaagttgctttttctttaagctcttttttcttttccctaacgattcttgtagc-aagtcctcttacttcagcgacggcttctttcaatcgt |
31077849 |
T |
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| Q |
201 |
cgctctgat-ccaacatttaatattttcttgactttccatagaaatggaatcgc |
253 |
Q |
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| T |
31077848 |
cgctc-gatccctatgtttaatattttcttcactttccatatcaatggaatcgc |
31077796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 31132073 - 31131826
Alignment:
| Q |
1 |
tgaagttgtatctctcccagcaagaataaagcttattacaatatcaacaacaaaagattcatctgaatgacctgaacttaaaaatcgtgatagaatatcc |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||| |||||||||||||| || | ||||||| |
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| T |
31132073 |
tgaagttgtatctctcccagcaagaataaagcttatcacaatatcaactacaaaagattcgtccgaatgaccagaacttaaaaatcgcgacaaaatatcc |
31131974 |
T |
|
| Q |
101 |
aatgattccaacgatgatttttcttcaagctcctgtttcttttccctaacgattcttgtggctgagtcctcttacttcagcagcagcttcttttaaccgt |
200 |
Q |
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| T |
31131973 |
accgattccaaggtttccttttctttaagctcttttttcttttccctaacaatttttgtggc-gagcccccttacttcagcgacagcttctttcaaccgt |
31131875 |
T |
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| Q |
201 |
cgctctgatccaacatttaatattttcttgactttccatagaaatggaa |
249 |
Q |
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||||| | ||||| |||| | ||| || |||||||||| |||||||| |
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| T |
31131874 |
cgctcgggtccaatgtttaggaattttttcactttccataaaaatggaa |
31131826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 35 - 274
Target Start/End: Complemental strand, 31129011 - 31128773
Alignment:
| Q |
35 |
attacaatatcaacaacaaaagattcatctgaatgacctgaacttaaaaatcgtgatagaatatccaatgattccaacgatgatttttcttcaagctcct |
134 |
Q |
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|||||||||||||| |||||||||| |||||||| | |||| || ||||| ||||||| |||||||||||||| |||||||||| ||| ||| | |
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| T |
31129011 |
attacaatatcaactgcaaaagattcttctgaatgtgcgtaactcaagcgtcgtggtagaataaccaatgattccaacactgatttttctacaaactctt |
31128912 |
T |
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| Q |
135 |
gtttcttttccctaacgattcttgtggctgagtcctcttacttcagcagcagcttcttttaaccgtcgctctgatccaacatttaatattttcttgactt |
234 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| | | |||||||||| |||| || ||||||||||||||||||||||| |||| |
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| T |
31128911 |
ttttcttttccctaacgattcttgtggc-gagtcctcttacttcaacgacggcttcttttagccgtttcttggatccaacatttaatattttcttcactt |
31128813 |
T |
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| Q |
235 |
tccatagaaatggaatcgctgcatttaacctctctctgct |
274 |
Q |
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|||||||||||||||| || ||||||||||||| ||||| |
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| T |
31128812 |
tccatagaaatggaatggcatcatttaacctctcgctgct |
31128773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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