View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12993_low_2 (Length: 710)
Name: NF12993_low_2
Description: NF12993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12993_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 14 - 484
Target Start/End: Complemental strand, 20191315 - 20190844
Alignment:
| Q |
14 |
cataggcataattaacaaatctacactacatatagatataattttagtgtttgtgtccatctatcttaagtatctctacgtgagaaaacataagatttta |
113 |
Q |
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| T |
20191315 |
cataggcataattaacaaatctacactacatatagatataattttagtgtttgtgtccatctatcttaagtatctctacgtgtgaaaacataagatttta |
20191216 |
T |
|
| Q |
114 |
attttgatacactgtcatgtaaagttatttacactgtcaaacaatcacaaccaatcgtatatctaacttttaagatagttatagtaaaagttaaacattt |
213 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20191215 |
attttggtacactgtcatgtaaagttatctacactgtcaaacaatcacaaccaatcgtatatctaacttttaagatagttatagtaaaagttaaacattt |
20191116 |
T |
|
| Q |
214 |
ctaacgattcgacaattataattgattgacaatgtaaatcctttctacactgacactacataccaactaaatccaatacatgatactcaattgaggggaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20191115 |
ctaacgattcgacaattataattgattgacaatgtaaatcctttctacactgacactacataccaactaaatccaatacatgatactcaattgaggggaa |
20191016 |
T |
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| Q |
314 |
att-aaactcttcatacccatataatggcttaatgctccatggaaaaaatgcaactgaaaacacaaattgggaagctgagggtgtcaaatgaagattatc |
412 |
Q |
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||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
20191015 |
attaaaactattcatacccatataatggcttaatgctccatggaaaaaatgcaactgaaaacacaaattgggaagctgagggtgacaaatgaagattatc |
20190916 |
T |
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| Q |
413 |
tttaagttgataggaaattgctgtccatacaaatgacctaaaaccctgcatcaataatgatcttaattaggt |
484 |
Q |
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| T |
20190915 |
tttaagttgataggaaattgctgtccatacaaatgacctaaaaccctgcatcaatagtgttcttaattaggt |
20190844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 571 - 670
Target Start/End: Complemental strand, 20190757 - 20190658
Alignment:
| Q |
571 |
ttctaattacttgtccggtgtccgacatatgttagtgtcttgcaccgaaacaacactgacacgtgtgatcacattcaattatgtcacttttaattatgtc |
670 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20190757 |
ttctaattacttgtccggtgtccgacatatgttagtgtcatgcaccgaaacaacactgacacgtgtgatcacattcaattatgtcacttttaattatgtc |
20190658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 251
Target Start/End: Complemental strand, 4865284 - 4865176
Alignment:
| Q |
141 |
tttacactgtcaaacaatcacaaccaatcgtatatctaacttttaagatagttatagtaaaagttaaacatttctaacgattcgacaattataattgatt |
240 |
Q |
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||||||||||||||||||||||||||||| ||||| | | |||||||||||||||| | ||| | | |||| | | ||| ||||||||||||||||| |
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| T |
4865284 |
tttacactgtcaaacaatcacaaccaatcatatatgtgatttttaagatagttataattaaact--cagatttttcatgatccgacaattataattgata |
4865187 |
T |
|
| Q |
241 |
gacaatgtaaa |
251 |
Q |
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||||||||||| |
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| T |
4865186 |
gacaatgtaaa |
4865176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 250
Target Start/End: Complemental strand, 4807343 - 4807242
Alignment:
| Q |
149 |
gtcaaacaatcacaaccaatcgtatatctaacttttaagatagttatagtaaaagttaaacatttctaacgattcgacaattataattgattgacaatgt |
248 |
Q |
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|||||| |||||||||||||| | || | |||||||||||||||||| | ||| | ||| |||| || ||| |||||||||||||| ||| ||||||| |
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| T |
4807343 |
gtcaaataatcacaaccaatcatgcatgtgacttttaagatagttataattaaactcaaatatttgcaatgatccgacaattataatttattaacaatgt |
4807244 |
T |
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| Q |
249 |
aa |
250 |
Q |
| |
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|| |
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|
| T |
4807243 |
aa |
4807242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 16979579 - 16979642
Alignment:
| Q |
105 |
aagattttaattttgatacactgtca-tgtaaagttatttacactgtcaaacaatcacaaccaa |
167 |
Q |
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|||| ||||||||||||||||||||| |||||| |||||||||||||| |||||||||||| |
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| T |
16979579 |
aagagtttaattttgatacactgtcagtgtaaaaagatttacactgtcaacaaatcacaaccaa |
16979642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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