View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12993_low_20 (Length: 280)
Name: NF12993_low_20
Description: NF12993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12993_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 17 - 273
Target Start/End: Original strand, 7264736 - 7264985
Alignment:
| Q |
17 |
ccttctacatttcaaaaaggaaataatacaaaattacatatagttgtacnnnnnnnncagcacatatatagttgtacttcttaaataaatatatttagta |
116 |
Q |
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| T |
7264736 |
ccttctacatttcaaaaaggaaataatacaaaa---catatagttgtacttttttttcagcacatatatagttgtacttcttaaataaatatatttagta |
7264832 |
T |
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| Q |
117 |
ccatgcttcttaggcacagtaccatgttattaaggaaggaaaagaaacacaaaacataacactcaatgactcttaannnnnnnggtgttaaccctccaat |
216 |
Q |
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| T |
7264833 |
ccatgcttcttaggcacagtaccatgttatt----aaggaaaagaaacacaaaacataacactcaatgactcttaatttttttggtgttaaccctccaat |
7264928 |
T |
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| Q |
217 |
tattagaaggttcctagactcaatgactcttaataataatataaaactatgcttctt |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7264929 |
tattagaaggttcctagactcaatgactcttaataataatataaaactatgcttctt |
7264985 |
T |
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