View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12993_low_21 (Length: 272)
Name: NF12993_low_21
Description: NF12993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12993_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 23 - 243
Target Start/End: Complemental strand, 43224071 - 43223851
Alignment:
| Q |
23 |
ctgagtgttttggttttcaaccatatattatcttggattttatattaggatactgtttcatctatatttcattgatgannnnnnnnggttaaccttagga |
122 |
Q |
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| T |
43224071 |
ctgagtgttttggttttcaaccatatattatcttggattttttattaggatactgtttcatctatatttcattgatgattttttttggttaaccttagga |
43223972 |
T |
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| Q |
123 |
attggtggagtgggagcataagagtgaagtgcctggaaagatgcatgcatgtggccatgatgctcatgttgctatgcttcttggtgctgctaagatcctc |
222 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43223971 |
attggtggagtgggagcataagagtaaagtgcctggaaagatgcatgcatgtggccatgatgctcatgttgctatgcttcttggtgctgctaagatcctc |
43223872 |
T |
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| Q |
223 |
aaggaacatgaaaaacagtta |
243 |
Q |
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||||||||||||||||||||| |
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| T |
43223871 |
aaggaacatgaaaaacagtta |
43223851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 25 - 255
Target Start/End: Original strand, 41654905 - 41655137
Alignment:
| Q |
25 |
gagtgttttggttttcaaccatatattatcttggattttatattaggata--ctgtttcatctatatttcattgatgannnnnnnn-ggttaaccttagg |
121 |
Q |
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||||||||||||||| ||| ||||||| || | |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
41654905 |
gagtgttttggttttaaac-atatattgtcatatattttatattaggatatactgtttcatctatatttcattgatgaattttttttggttaaccttagg |
41655003 |
T |
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| Q |
122 |
aattggtggagtgggagcataagagtgaagtgcctggaaagatgcatgcatgtggccatgatgctcatgttgctatgcttcttggtgctgctaagatcct |
221 |
Q |
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| T |
41655004 |
aattggtggagtgggagcataagagtaaagtgcctggaaagatgcatgcatgtggccatgatgctcatgttgctatgcttcttggtgctgctaagatcct |
41655103 |
T |
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| Q |
222 |
caaggaacatgaaaaacagttacaggtatggttt |
255 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
41655104 |
caaggaacatgaaaaacagttacaggtatggttt |
41655137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 111 - 255
Target Start/End: Original strand, 41650635 - 41650779
Alignment:
| Q |
111 |
ttaaccttaggaattggtggagtgggagcataagagtgaagtgcctggaaagatgcatgcatgtggccatgatgctcatgttgctatgcttcttggtgct |
210 |
Q |
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||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| |
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| T |
41650635 |
ttaacattaggaattggtggagtgggagcataagagtaaagtacctggaaagatgcatgcatgtggtcatgatgctcacgtggctatgcttcttggtgct |
41650734 |
T |
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| Q |
211 |
gctaagatcctcaaggaacatgaaaaacagttacaggtatggttt |
255 |
Q |
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| T |
41650735 |
gctaagattctcaaggaacatgaaaaagagttacaagtatggttt |
41650779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 110 - 255
Target Start/End: Complemental strand, 43213120 - 43212975
Alignment:
| Q |
110 |
gttaaccttaggaattggtggagtgggagcataagagtgaagtgcctggaaagatgcatgcatgtggccatgatgctcatgttgctatgcttcttggtgc |
209 |
Q |
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|||||| | ||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| |
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| T |
43213120 |
gttaacttcaggaattggtggagtgggagcataagagtaaagtacctggaaagatgcatggatgtggtcatgatgctcatgttgctatgcttctaggtgc |
43213021 |
T |
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| Q |
210 |
tgctaagatcctcaaggaacatgaaaaacagttacaggtatggttt |
255 |
Q |
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||||||||| |||||||| ||||||||| ||||||||||||||||| |
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| T |
43213020 |
tgctaagattctcaaggagcatgaaaaagagttacaggtatggttt |
43212975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 117 - 254
Target Start/End: Complemental strand, 43206178 - 43206041
Alignment:
| Q |
117 |
ttaggaattggtggagtgggagcataagagtgaagtgcctggaaagatgcatgcatgtggccatgatgctcatgttgctatgcttcttggtgctgctaag |
216 |
Q |
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||||||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43206178 |
ttaggaaatggtggagtgggagcataaaagtaaagtacctggaaagatgcatgcatgtggtcatgatgctcatgttgctatgcttcttggtgctgctaag |
43206079 |
T |
|
| Q |
217 |
atcctcaaggaacatgaaaaacagttacaggtatggtt |
254 |
Q |
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|| |||||||| | ||||||||| ||||| |||||||| |
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| T |
43206078 |
attctcaaggaccgtgaaaaacatttacatgtatggtt |
43206041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 111 - 255
Target Start/End: Complemental strand, 43227516 - 43227372
Alignment:
| Q |
111 |
ttaaccttaggaattggtggagtgggagcataagagtgaagtgcctggaaagatgcatgcatgtggccatgatgctcatgttgctatgcttcttggtgct |
210 |
Q |
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||||| |||||||||| |||| ||||||||||| || |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43227516 |
ttaacattaggaattgttggaatgggagcataaaagcaaagtacctggaaagatgcatgcatgtggtcatgatgctcatgttgctatgcttcttggtgct |
43227417 |
T |
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| Q |
211 |
gctaagatcctcaaggaacatgaaaaacagttacaggtatggttt |
255 |
Q |
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| T |
43227416 |
gcaaagatcctcaagcagcacgaaaaagagttacaagtatggttt |
43227372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 237
Target Start/End: Original strand, 31558552 - 31558630
Alignment:
| Q |
159 |
aaagatgcatgcatgtggccatgatgctcatgttgctatgcttcttggtgctgctaagatcctcaaggaacatgaaaaa |
237 |
Q |
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|||||||||||| ||||| ||||||||||||||| | ||||| ||||||||||| ||||| || || ||||||||||| |
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| T |
31558552 |
aaagatgcatgcgtgtggtcatgatgctcatgttaccatgctacttggtgctgcaaagattcttaaacaacatgaaaaa |
31558630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 248
Target Start/End: Complemental strand, 5072808 - 5072673
Alignment:
| Q |
113 |
aaccttaggaattggtggagtgggagcataagagtgaagtgcctggaaagatgcatgcatgtggccatgatgctcatgttgctatgcttcttggtgctgc |
212 |
Q |
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||||||||||| |||||||||||||||| | |||| | || ||||||||||||||||| ||||| ||||||||||||||| | ||||| ||||||||||| |
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| T |
5072808 |
aaccttaggaaatggtggagtgggagcacaggagtaaggtacctggaaagatgcatgcgtgtggtcatgatgctcatgttaccatgctacttggtgctgc |
5072709 |
T |
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| Q |
213 |
taagatcctcaaggaacatgaaaaacagttacaggt |
248 |
Q |
| |
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||||| |||||| | ||||||||| || ||||||| |
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| T |
5072708 |
aaagattctcaagcagcatgaaaaagagatacaggt |
5072673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 34595251 - 34595170
Alignment:
| Q |
156 |
tggaaagatgcatgcatgtggccatgatgctcatgttgctatgcttcttggtgctgctaagatcctcaaggaacatgaaaaa |
237 |
Q |
| |
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|||||||||||||| ||||| | |||||||||||||| ||||| ||||||||| | ||||| ||||| ||||||||||| |
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| T |
34595251 |
tggaaagatgcatgagtgtggtcgtgatgctcatgttgtcatgctacttggtgctacaaagattctcaaacaacatgaaaaa |
34595170 |
T |
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