View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12993_low_22 (Length: 267)
Name: NF12993_low_22
Description: NF12993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12993_low_22 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 37633372 - 37633131
Alignment:
| Q |
17 |
aatcataaaacttagtaacaaactaactataatgatgataataatgcatgaaataaaatacaacaaattatcacgttattaacctctaatattttctttt |
116 |
Q |
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| T |
37633372 |
aatcataaaacatagtaacaaactaactataat---------aatgcatgaaataaaatacaacaaattatcacgttattaacctataatattttctttt |
37633282 |
T |
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| Q |
117 |
atctatttttctttaaagtgtatacacatatgaatgtatatcaaacatttaccaataaaataatgttaaaaggtagcatattataacttcatgcacgtga |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
37633281 |
atctatttttctttaaagtgtatacacatatgaatgtatatcaaacatttaccaataaaataatgttaaaaggtagcgtaatataacttcatgcacgtga |
37633182 |
T |
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| Q |
217 |
ttcttacgtcttcttggatccttcttcaatcacgttgtgtgatgtggtgct |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37633181 |
ttcttacgtcttcttggatccttcttcaatcacgttgtgtgatgtggtgct |
37633131 |
T |
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