View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12993_low_23 (Length: 265)
Name: NF12993_low_23
Description: NF12993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12993_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 7072983 - 7073231
Alignment:
| Q |
1 |
tacacatgatctgattcaattccgtgacgtggtctgtctaaatacattttgataccttcatcttcaccatcactgattttgaatttcaaagtcgaaccct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7072983 |
tacacatgatctgattcaattccgtgacgtggtctgtctaaatacattttgataccttcatcttcaccatcactgattttgaatttcaaagtcgaaccct |
7073082 |
T |
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| Q |
101 |
ctgatgagatggttggaatgacgaagccaaaaatgaagcccaactttgagaaataaggagcagaaaaaagatcaatagttatgtaatcatgtctagttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7073083 |
ctgatgagatggttggaatgacgaagccaaaaatgaagcccaactttgagaaataaggagcagaaaaaagatcaatagttatgtaatcatgtctagttgt |
7073182 |
T |
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| Q |
201 |
actatattccaaccactctggaattttgctacctggatacacatacatg |
249 |
Q |
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| T |
7073183 |
actatattccaaccactctggaattttgctacctggatacacatacatg |
7073231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 7033360 - 7033116
Alignment:
| Q |
1 |
tacacatgatctgattcaattccgtgacgtggtctgtctaaatacattttgataccttcatcttcaccatcactgattttgaatttcaaagtcgaaccct |
100 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||| ||||| ||||||| | || ||||| |
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| T |
7033360 |
tacacatgatctgattcaattccacgacgtggtctgcttaaatacattttgatacctttatcttgaccatcacttatttttaatttcacaatctgaccct |
7033261 |
T |
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| Q |
101 |
ctgatgagatggttggaatgacgaagccaaaaatgaagcccaactttgagaaataaggagcagaaaaaagatcaatagttatgtaatcatgtctagttgt |
200 |
Q |
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| T |
7033260 |
ctgatgagttggttggaatgatgaagccaaaaatgaatcccaacttagagaaataaggagcggaagaaagatcaatagttatgtaatcatgtgtagttgt |
7033161 |
T |
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| Q |
201 |
actatattccaaccactctggaattttgctacctggatacacata |
245 |
Q |
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| T |
7033160 |
actatattccaaccactctggaatttcgctacctggatatacata |
7033116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 7025980 - 7025726
Alignment:
| Q |
1 |
tacacatgatctgattcaattccgtgacgtggtctgtctaaatacattttgataccttcatcttcaccatcactgattttgaatttcaaagtcgaaccct |
100 |
Q |
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||||||||||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| | | ||||||| |
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| T |
7025980 |
tacacatgatctgattcaattccatgatgtggtctgtccaaatacactttgataccttcatcttcaccatcactgattttaaatttcagaattgaaccct |
7025881 |
T |
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| Q |
101 |
ctgatgagatggttggaatgacgaagccaaaaatgaagcccaactttgagaaataaggagcagaaaaaagatcaatagttatgtaatcatgtctag---- |
196 |
Q |
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| T |
7025880 |
cagacgagatggtaggaatgatgaagccaaaaatgaatcccaactttgagaaataaggagaagaagaaagatcaatggctatgtaatcatgtctagttgc |
7025781 |
T |
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| Q |
197 |
--ttgtactatattccaaccactctggaattttgctacctggatacacatacatg |
249 |
Q |
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||| ||| |||||||||||||| ||||||| ||||||||||||||| |||||| |
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| T |
7025780 |
acttgcactgtattccaaccactcaggaatttcgctacctggatacacgtacatg |
7025726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 7039069 - 7038815
Alignment:
| Q |
1 |
tacacatgatctgattcaattccgtgacgtggtctgtctaaatacattttgataccttca------tcttcaccatcactgattttgaatttcaaagtcg |
94 |
Q |
| |
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||||||||||||||||| ||||| || |||||||| || |||| ||||||||||||| |||||||||||| |||||| ||||||||||||| |
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| T |
7039069 |
tacacatgatctgattctattccatgtcgtggtctacgcaagtacactttgataccttcaccatcatcttcaccatcattgatttcaaatttcaaagtcg |
7038970 |
T |
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| Q |
95 |
aaccctctgatgagatggttggaatgacgaagccaaaaatgaagcccaactttgagaaataaggagcagaaaaaagatcaatagttatgtaatcatgtct |
194 |
Q |
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|||||||||||| | |||||||||||| |||| | |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7038969 |
aaccctctgatgtggtggttggaatgatgaaggccaaaatgaatcccaatttagagaaataaggagcagaaaaaagatcaatagttatgtaatcatgtgt |
7038870 |
T |
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| Q |
195 |
agttgtactatattccaaccactctggaattttgctacctggatacacatacatg |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
7038869 |
agttgtactatattccaaccactctggaattttgctacctggatagagatacatg |
7038815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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