View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12993_low_26 (Length: 250)

Name: NF12993_low_26
Description: NF12993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12993_low_26
NF12993_low_26
[»] chr3 (4 HSPs)
chr3 (12-250)||(11006247-11006485)
chr3 (12-248)||(11015812-11016048)
chr3 (12-250)||(11024822-11025060)
chr3 (35-167)||(47452275-47452407)
[»] chr8 (6 HSPs)
chr8 (41-242)||(4032209-4032410)
chr8 (47-167)||(12199897-12200017)
chr8 (47-167)||(12444325-12444445)
chr8 (48-155)||(12194892-12194999)
chr8 (48-155)||(12439320-12439427)
chr8 (72-165)||(15348477-15348570)
[»] chr4 (32 HSPs)
chr4 (35-250)||(7770982-7771197)
chr4 (35-155)||(7822547-7822667)
chr4 (35-165)||(7904610-7904740)
chr4 (38-155)||(7813061-7813178)
chr4 (36-250)||(7774114-7774328)
chr4 (38-155)||(7800218-7800335)
chr4 (35-250)||(7789667-7789882)
chr4 (35-164)||(7238091-7238220)
chr4 (41-165)||(45372427-45372551)
chr4 (36-250)||(7877299-7877513)
chr4 (36-165)||(7907904-7908033)
chr4 (39-165)||(48862823-48862952)
chr4 (36-167)||(49044597-49044728)
chr4 (37-165)||(48170956-48171087)
chr4 (36-153)||(48902529-48902646)
chr4 (34-165)||(33134193-33134327)
chr4 (37-165)||(48156797-48156925)
chr4 (68-165)||(48891020-48891117)
chr4 (34-165)||(37827364-37827495)
chr4 (38-164)||(7765202-7765328)
chr4 (35-165)||(49041508-49041638)
chr4 (35-165)||(50251178-50251308)
chr4 (38-174)||(45366579-45366718)
chr4 (71-137)||(48735713-48735779)
chr4 (36-142)||(50668622-50668728)
chr4 (39-167)||(48148050-48148181)
chr4 (73-138)||(49048996-49049061)
chr4 (38-138)||(48898303-48898403)
chr4 (68-164)||(7786054-7786150)
chr4 (35-195)||(47207512-47207672)
chr4 (38-165)||(48870123-48870250)
chr4 (38-165)||(48885809-48885936)
[»] chr6 (2 HSPs)
chr6 (36-167)||(21015355-21015486)
chr6 (35-189)||(21979990-21980144)
[»] chr5 (5 HSPs)
chr5 (55-203)||(29695750-29695898)
chr5 (48-165)||(29687642-29687759)
chr5 (38-155)||(1812006-1812123)
chr5 (79-138)||(29712866-29712925)
chr5 (85-137)||(178647-178699)
[»] chr1 (5 HSPs)
chr1 (37-165)||(24309757-24309885)
chr1 (37-155)||(24339994-24340112)
chr1 (73-155)||(24322078-24322160)
chr1 (37-134)||(24415417-24415514)
chr1 (97-155)||(24366795-24366853)
[»] scaffold0508 (1 HSPs)
scaffold0508 (37-206)||(11842-12011)
[»] chr7 (1 HSPs)
chr7 (36-104)||(48883361-48883429)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 11006485 - 11006247
Alignment:
Q  12 acagatggagatgaagaccggcctgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtt 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11006485 acagatggagacgaagaccggcctgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtt 11006386  T
Q  112 tgtaagtcatggttaactcttatctctgatcctcactttgcaaaatcgcattttgacctttccactacaacacacactaatagaattgtgttcttgtcaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  11006385 tgtaagtcatggttaactcttatctctgatcctcactttgcaaaatcgcattttgacctttccactagaacacacactaatagaattgtgttcatgtcaa 11006286  T
Q  212 ctccagctcttgaaattcgatccatagattttgaagcat 250  Q
    |||||||||||||||||||||||||||||||||||||||    
T  11006285 ctccagctcttgaaattcgatccatagattttgaagcat 11006247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 12 - 248
Target Start/End: Complemental strand, 11016048 - 11015812
Alignment:
Q  12 acagatggagatgaagaccggcctgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtt 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| || ||||||||||| || |||    
T  11016048 acagatggagaagaagaccggcctgtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctctcatacgtttcaaatgcgtt 11015949  T
Q  112 tgtaagtcatggttaactcttatctctgatcctcactttgcaaaatcgcattttgacctttccactacaacacacactaatagaattgtgttcttgtcaa 211  Q
    |||||||||| |||| ||||||||||||||| | |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||    
T  11015948 tgtaagtcattgttagctcttatctctgatcataactttgcaaaatcgcattttgaactttccactgcaacacacactaatagaattgtgttcatgtcaa 11015849  T
Q  212 ctccagctcttgaaattcgatccatagattttgaagc 248  Q
    ||| ||||||||||| ||||||||| |||||||||||    
T  11015848 ctctagctcttgaaactcgatccattgattttgaagc 11015812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 11025060 - 11024822
Alignment:
Q  12 acagatggagatgaagaccggcctgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtt 111  Q
    ||||||||||| |||||||| ||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||| || ||||||||||| || |||    
T  11025060 acagatggagaagaagaccgacctgtatttgcctcatgaattgatcatacaaatcatgttgaggttaccggtgaagtctctcatacgtttcaaatgcgtt 11024961  T
Q  112 tgtaagtcatggttaactcttatctctgatcctcactttgcaaaatcgcattttgacctttccactacaacacacactaatagaattgtgttcttgtcaa 211  Q
    ||||||||||||||| ||||||||||||||| | |||||||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||||||    
T  11024960 tgtaagtcatggttagctcttatctctgatcataactttgcaaaatcgcattttgaactttcccctgcaacacacactaatagaattgtgttcatgtcaa 11024861  T
Q  212 ctccagctcttgaaattcgatccatagattttgaagcat 250  Q
    ||| |||||| |||| |||||||||||||||||||||||    
T  11024860 ctctagctctggaaactcgatccatagattttgaagcat 11024822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 167
Target Start/End: Complemental strand, 47452407 - 47452275
Alignment:
Q  35 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 134  Q
    ||||||| |||| ||||||||| || || |||||| ||||||||||||||||||| ||| |||| ||||||||  ||| ||||||||||||  |||||||    
T  47452407 tgtatctacctcttgaattgataatccagatcttggtgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttat 47452308  T
Q  135 ctctgatcctcactttgcaaaatcgcattttga 167  Q
    ||||||||||| |||||||||| | ||||||||    
T  47452307 ctctgatcctctctttgcaaaaacacattttga 47452275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 41 - 242
Target Start/End: Complemental strand, 4032410 - 4032209
Alignment:
Q  41 tgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctga 140  Q
    ||||||||||||||||||| ||||||||  ||||  | ||  ||||||| |||||||||||||||||||||||||| || |||||||||||||| |||||    
T  4032410 tgcctcatgaattgatcatccaaatcttactgagactaccaatgaagtctcttatacgtttcaagtgtgtttgtaaatcttggttaactcttatatctga 4032311  T
Q  141 tcctcactttgcaaaatcgcattttgacctttccactacaacacacactaatagaattgtgttcttgtcaactccagctcttgaaattcgatccatagat 240  Q
    ||||||||||||||| ||||||||| |  || || ||| |||||||| | ||||| ||||| || | |||||||||  |||| ||| |||||| ||||||    
T  4032310 tcctcactttgcaaattcgcattttcaaattacctctaaaacacacattcatagacttgtgatcatatcaactccaaatcttaaaactcgatctatagat 4032211  T
Q  241 tt 242  Q
    ||    
T  4032210 tt 4032209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 47 - 167
Target Start/End: Original strand, 12199897 - 12200017
Alignment:
Q  47 atgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgatcctca 146  Q
    ||||||| ||||| |||||| || ||||||||||||||||||| ||| || ||||||| ||||||||||||||||||||  |||||||||||||||||||    
T  12199897 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctca 12199996  T
Q  147 ctttgcaaaatcgcattttga 167  Q
    ||||||||| |||||| ||||    
T  12199997 ctttgcaaattcgcatgttga 12200017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 47 - 167
Target Start/End: Original strand, 12444325 - 12444445
Alignment:
Q  47 atgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgatcctca 146  Q
    ||||||| ||||| |||||| || ||||||||||||||||||| ||| || ||||||| ||||||||||||||||||||  |||||||||||||||||||    
T  12444325 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctca 12444424  T
Q  147 ctttgcaaaatcgcattttga 167  Q
    ||||||||| |||||| ||||    
T  12444425 ctttgcaaattcgcatgttga 12444445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 155
Target Start/End: Original strand, 12194892 - 12194999
Alignment:
Q  48 tgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgatcctcac 147  Q
    |||||| ||||| |||||| || ||||||||||||||||||| ||| || ||||||| ||  ||||||||||||||||| |||||||||||||||| |||    
T  12194892 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacac 12194991  T
Q  148 tttgcaaa 155  Q
    ||||||||    
T  12194992 tttgcaaa 12194999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 155
Target Start/End: Original strand, 12439320 - 12439427
Alignment:
Q  48 tgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgatcctcac 147  Q
    |||||| ||||| |||||| || ||||||||||||||||||| ||| || ||||||| ||  ||||||||||||||||| |||||||||||||||| |||    
T  12439320 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacac 12439419  T
Q  148 tttgcaaa 155  Q
    ||||||||    
T  12439420 tttgcaaa 12439427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 165
Target Start/End: Original strand, 15348477 - 15348570
Alignment:
Q  72 gaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgatcctcactttgcaaaatcgcatttt 165  Q
    |||||| ||||||||||| |||||||||||||| || ||||||||||| |||||  ||||||||||||||||| |||| ||||| || ||||||    
T  15348477 gaggttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacatttt 15348570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 35 - 250
Target Start/End: Original strand, 7770982 - 7771197
Alignment:
Q  35 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 134  Q
    ||||||||||||||||| | || || |||||  || ||||||||||||||||||| |||||| ||||||| || ||||||||||| |||||  |||||||    
T  7770982 tgtatctgcctcatgaactaataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctcttat 7771081  T
Q  135 ctctgatcctcactttgcaaaatcgcattttgacctttccactacaacacacactaatagaattgtgttcttgtcaactccagctcttgaaattcgatcc 234  Q
    ||||||||||||||||| ||| || |||||| | ||| || || |||||||||||  |||| || | | | | ||||||| | ||| ||||||||||||     
T  7771082 ctctgatcctcactttgaaaattcacattttcaacttgcctctgcaacacacacttgtagatttttatgcatatcaactcaatctcatgaaattcgatct 7771181  T
Q  235 atagattttgaagcat 250  Q
    ||||||||||||||||    
T  7771182 atagattttgaagcat 7771197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 35 - 155
Target Start/End: Original strand, 7822547 - 7822667
Alignment:
Q  35 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 134  Q
    |||||||||||||| | ||||| || | ||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||  |||||||    
T  7822547 tgtatctgcctcatcatttgataatcctaatcttgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttat 7822646  T
Q  135 ctctgatcctcactttgcaaa 155  Q
    ||||||||| |||||||||||    
T  7822647 ctctgatccccactttgcaaa 7822667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 35 - 165
Target Start/End: Original strand, 7904610 - 7904740
Alignment:
Q  35 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 134  Q
    ||||||| |||| ||||||||| || ||||||||| || ||||||| |||||||| |||||||||||||| ||||||||||||| ||||||  |||||||    
T  7904610 tgtatcttcctcgtgaattgattattcaaatcttgatgtggttgcctgtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctcttat 7904709  T
Q  135 ctctgatcctcactttgcaaaatcgcatttt 165  Q
    ||||||||||||||||||||| || ||||||    
T  7904710 ctctgatcctcactttgcaaattcacatttt 7904740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 38 - 155
Target Start/End: Original strand, 7813061 - 7813178
Alignment:
Q  38 atctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc 137  Q
    ||||||||||||| ||||| || | ||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||  ||||||||||    
T  7813061 atctgcctcatgatttgataatcctaatcttgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctc 7813160  T
Q  138 tgatcctcactttgcaaa 155  Q
    ||| || |||||||||||    
T  7813161 tgaaccccactttgcaaa 7813178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 36 - 250
Target Start/End: Complemental strand, 7774328 - 7774114
Alignment:
Q  36 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatc 135  Q
    |||||| |||||||||||||| || ||||||||| || || ||||||||||||| ||||| | |||||| ||||||||||||  ||||||  ||||||||    
T  7774328 gtatcttcctcatgaattgattattcaaatcttgatgcggctgccggtgaagtctcttattcatttcaaatgtgtttgtaagctatggttttctcttatc 7774229  T
Q  136 tctgatcctcactttgcaaaatcgcattttgacctttccactacaacacacactaatagaattgtgttcttgtcaactccagctcttgaaattcgatcca 235  Q
    |||||||| || |||||||| || |||||| | ||  |||| ||||| ||||||  ||||||| ||| | | ||| ||| | ||| |||||||||||| |    
T  7774228 tctgatccccattttgcaaattcacattttcaactcaccaccacaacgcacactcctagaattatgtgcatatcatctctatctcatgaaattcgatcta 7774129  T
Q  236 tagattttgaagcat 250  Q
    ||| |||||||||||    
T  7774128 taggttttgaagcat 7774114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 155
Target Start/End: Original strand, 7800218 - 7800335
Alignment:
Q  38 atctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc 137  Q
    ||||||||||||| ||||| || | ||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||  ||||| ||||    
T  7800218 atctgcctcatgatttgataatcctaatcttgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttgtctc 7800317  T
Q  138 tgatcctcactttgcaaa 155  Q
    |||||| | |||||||||    
T  7800318 tgatccccgctttgcaaa 7800335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 35 - 250
Target Start/End: Original strand, 7789667 - 7789882
Alignment:
Q  35 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 134  Q
    ||||||||||||||||| |||| || |||||  || ||||||||||||||||||| |||||| ||||||| || ||||||||||| |||||  || ||||    
T  7789667 tgtatctgcctcatgaactgataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttcttttat 7789766  T
Q  135 ctctgatcctcactttgcaaaatcgcattttgacctttccactacaacacacactaatagaattgtgttcttgtcaactccagctcttgaaattcgatcc 234  Q
    ||| ||||||||||||| ||| || |||||| | ||| || |  |||||||||||  |||| || | |   | ||||||| | ||| ||||||| ||||     
T  7789767 ctccgatcctcactttgaaaattcacattttcaacttgcctccgcaacacacacttgtagatttttatgtatatcaactcaatctcatgaaatttgatct 7789866  T
Q  235 atagattttgaagcat 250  Q
    ||||||||||||||||    
T  7789867 atagattttgaagcat 7789882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 35 - 164
Target Start/End: Complemental strand, 7238220 - 7238091
Alignment:
Q  35 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 134  Q
    ||||||||||||||||| | ||||| |||||  || |||||||||| |||||||| |||||  ||||||| |||||||||||||| |||||  |||||||    
T  7238220 tgtatctgcctcatgaactaatcatccaaattctgatgaggttgccagtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctcttat 7238121  T
Q  135 ctctgatcctcactttgcaaaatcgcattt 164  Q
    |||||| |||||||||||||| || |||||    
T  7238120 ctctgaccctcactttgcaaattcacattt 7238091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 165
Target Start/End: Complemental strand, 45372551 - 45372427
Alignment:
Q  41 tgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctga 140  Q
    |||||||||||||||| || |||||  |  | ||||||||||||||||| |||||||||||||| |||||||||||||| |||||  || ||||||||||    
T  45372551 tgcctcatgaattgatgattcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattatctctga 45372452  T
Q  141 tcctcactttgcaaaatcgcatttt 165  Q
    |||||| |||||||| || ||||||    
T  45372451 tcctcattttgcaaattcacatttt 45372427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 250
Target Start/End: Original strand, 7877299 - 7877513
Alignment:
Q  36 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatc 135  Q
    |||||| |||||||||||||| || |||||| || |  |||||| ||||||||| |||||||||||||| ||  ||||||||  ||||||  ||||||||    
T  7877299 gtatcttcctcatgaattgattatccaaatcctgatttggttgctggtgaagtctcttatacgtttcaaatgcatttgtaagctatggttttctcttatc 7877398  T
Q  136 tctgatcctcactttgcaaaatcgcattttgacctttccactacaacacacactaatagaattgtgttcttgtcaactccagctcttgaaattcgatcca 235  Q
    ||||||||  | |||||||| || |||||| | ||  |||| ||||| ||||||  ||||||| ||| | | ||| ||| | ||| |||||||||||| |    
T  7877399 tctgatcccaattttgcaaattcacattttcaactcaccaccacaacgcacactcctagaattatgtgcatatcacctctatctcatgaaattcgatcaa 7877498  T
Q  236 tagattttgaagcat 250  Q
    ||| |||||||||||    
T  7877499 taggttttgaagcat 7877513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 165
Target Start/End: Original strand, 7907904 - 7908033
Alignment:
Q  36 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatc 135  Q
    |||||| ||||||||||||||  | || ||| |  ||||||||||||||||||| |||| ||||||||||| |||| |||||||||||||  ||||||||    
T  7907904 gtatcttcctcatgaattgattttccagatcctactgaggttgccggtgaagtctcttacacgtttcaagtctgttcgtaagtcatggttttctcttatc 7908003  T
Q  136 tctgatcctcactttgcaaaatcgcatttt 165  Q
    |||| ||| || |||||||| || ||||||    
T  7908004 tctgctccccattttgcaaattcacatttt 7908033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 165
Target Start/End: Original strand, 48862823 - 48862952
Alignment:
Q  39 tctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc- 137  Q
    ||||||||||||||||||||| | |||| || | ||||| ||||||||||| ||||| |||||||| || ||||| ||||| |||||  ||||||||||     
T  48862823 tctgcctcatgaattgatcatcctaatcctgctaaggttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttatctct 48862922  T
Q  138 --tgatcctcactttgcaaaatcgcatttt 165  Q
      |||||||||||||||||| || ||||||    
T  48862923 catgatcctcactttgcaaattcacatttt 48862952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 167
Target Start/End: Complemental strand, 49044728 - 49044597
Alignment:
Q  36 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatc 135  Q
    ||||||||||||||| |||||||| |  ||  || |||||||||| |||| ||| ||| |||||||||||||||||||||||| ||||||  ||||||||    
T  49044728 gtatctgcctcatgacttgatcatccttattctgctgaggttgccagtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatc 49044629  T
Q  136 tctgatcctcactttgcaaaatcgcattttga 167  Q
    ||| |  | ||||||||||| || ||||||||    
T  49044628 tctcaaacccactttgcaaattcacattttga 49044597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 165
Target Start/End: Complemental strand, 48171087 - 48170956
Alignment:
Q  37 tatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatct 136  Q
    |||||| ||| |||||||||  | |||||  || |||||||  |||||||||| ||| |||||||||| |||||||||||||| |||||  |||||||||    
T  48171087 tatctggctcttgaattgatagttcaaattctgctgaggttatcggtgaagtctcttctacgtttcaaatgtgtttgtaagtcttggtttgctcttatct 48170988  T
Q  137 c---tgatcctcactttgcaaaatcgcatttt 165  Q
    |   |||||||||||||||||| |||||||||    
T  48170987 ctcatgatcctcactttgcaaattcgcatttt 48170956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 153
Target Start/End: Original strand, 48902529 - 48902646
Alignment:
Q  36 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatc 135  Q
    |||||| ||||||||||||||||| ||||| |||  | |||||||||| ||||| || || |||||||| |||||||||||||| |||||  |||||||     
T  48902529 gtatctacctcatgaattgatcatccaaattttgcagtggttgccggtaaagtctctcattcgtttcaaatgtgtttgtaagtcttggttttctcttata 48902628  T
Q  136 tctgatcctcactttgca 153  Q
    |||||||  |||||||||    
T  48902629 tctgatcagcactttgca 48902646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 165
Target Start/End: Complemental strand, 33134327 - 33134193
Alignment:
Q  34 ctgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactctta 133  Q
    |||||||||||||||||||||||||| |  ||  ||||||| || ||||||||||| ||||| |||||||| || ||||||||| | || ||  ||||||    
T  33134327 ctgtatctgcctcatgaattgatcatccttattctgttgagattaccggtgaagtctcttattcgtttcaaatgcgtttgtaagccttgattttctctta 33134228  T
Q  134 tctc---tgatcctcactttgcaaaatcgcatttt 165  Q
    ||||   |||||||||||||||||| || ||||||    
T  33134227 tctctaatgatcctcactttgcaaattcacatttt 33134193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 165
Target Start/End: Complemental strand, 48156925 - 48156797
Alignment:
Q  37 tatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatct 136  Q
    |||||||| | ||||||||| || |||||| | ||  |||| ||||||||||| ||| ||||||||||||| ||||||||||| |||||  |||||||||    
T  48156925 tatctgccacttgaattgataattcaaatccttttatggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttttctcttatct 48156826  T
Q  137 ctgatcctcactttgcaaaatcgcatttt 165  Q
    | ||| |||| |||||||| || ||||||    
T  48156825 ccgatactcattttgcaaattctcatttt 48156797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 48891020 - 48891117
Alignment:
Q  68 tgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgatcctcactttgcaaaatcgcatttt 165  Q
    ||||||||||  |||| ||||| |||||||||||||| || ||||||||||| |||||  ||||| |||| |||||||| |||||||| |||||||||    
T  48891020 tgttgaggttatcggtaaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttgtctcagatcctcattttgcaaattcgcatttt 48891117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 165
Target Start/End: Complemental strand, 37827495 - 37827364
Alignment:
Q  34 ctgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactctta 133  Q
    |||||||| |||||  | ||||||||  |||||||  |||||||| | |||||||| |||||| |||| |  || |||||||||||||||||||||||||    
T  37827495 ctgtatctacctcacaacttgatcatcgaaatcttactgaggttgtcagtgaagtctcttataagttttacatgcgtttgtaagtcatggttaactctta 37827396  T
Q  134 tctctgatcctcactttgcaaaatcgcatttt 165  Q
    | ||| ||||  |||||||||| || ||||||    
T  37827395 tatctaatcccgactttgcaaattcacatttt 37827364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 164
Target Start/End: Original strand, 7765202 - 7765328
Alignment:
Q  38 atctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc 137  Q
    |||| ||||| ||| ||||||| ||| |  |||||||||| ||||||||||| ||  ||  |||||||||  ||||||||| ||||||  || |||||||    
T  7765202 atcttcctcaagaactgatcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctc 7765301  T
Q  138 tgatcctcactttgcaaaatcgcattt 164  Q
    |||||||||||||||||| || |||||    
T  7765302 tgatcctcactttgcaaattcacattt 7765328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 165
Target Start/End: Complemental strand, 49041638 - 49041508
Alignment:
Q  35 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 134  Q
    |||||||| |||||||||||||||| | |||  |  |||| ||||| |||||||| |||||  ||||||| || ||||| ||||| |||||  |||||||    
T  49041638 tgtatctgtctcatgaattgatcatcctaattctaatgagattgccagtgaagtctcttatttgtttcaaatgcgtttgcaagtcttggttttctcttat 49041539  T
Q  135 ctctgatcctcactttgcaaaatcgcatttt 165  Q
    ||||||||| || |||||||| || ||||||    
T  49041538 ctctgatccccattttgcaaattctcatttt 49041508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 165
Target Start/End: Complemental strand, 50251308 - 50251178
Alignment:
Q  35 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 134  Q
    ||||||||||||| ||||||||||  ||||| ||  | |||||||| |||||| | |||||||  || ||||| |||| |||||| |||||  |||||||    
T  50251308 tgtatctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctcttatacaattaaagtgggtttctaagtcttggttttctcttat 50251209  T
Q  135 ctctgatcctcactttgcaaaatcgcatttt 165  Q
    ||||||||| |||| |||||| | |||||||    
T  50251208 ctctgatccccactgtgcaaatttgcatttt 50251178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 174
Target Start/End: Complemental strand, 45366718 - 45366579
Alignment:
Q  38 atctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc 137  Q
    |||| |||||||||||||| || |||||| |  | ||||| || |||||||| ||||||||||||||||| ||||||||||  |||||  ||||||||||    
T  45366718 atcttcctcatgaattgatgatccaaatcctactaaggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctc 45366619  T
Q  138 ---tgatcctcactttgcaaaatcgcattttgacctttcc 174  Q
       |||| | ||||||||||| || |||||| | ||||||    
T  45366618 tcgtgattcacactttgcaaattcacattttcaactttcc 45366579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 48735779 - 48735713
Alignment:
Q  71 tgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc 137  Q
    ||||||| ||||||||||| ||||| |||||||| |||||||||||||| |||||  ||||||||||    
T  48735779 tgaggttaccggtgaagtctcttattcgtttcaaatgtgtttgtaagtcttggttttctcttatctc 48735713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 50668622 - 50668728
Alignment:
Q  36 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatc 135  Q
    |||||||| | | ||||||||||| ||||| ||| |||||||||| ||||| |  ||||||||||||||||| |||||||| || |||||  |||| |||    
T  50668622 gtatctgcattacgaattgatcattcaaattttggtgaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatc 50668721  T
Q  136 tctgatc 142  Q
    || ||||    
T  50668722 tccgatc 50668728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 167
Target Start/End: Complemental strand, 48148181 - 48148050
Alignment:
Q  39 tctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc- 137  Q
    ||||||| ||||||||||  | |||||| | |  ||||| || |||||||| ||||| |||||||| ||||| |||||||| |||||  ||||||||||     
T  48148181 tctgcctgatgaattgatagttcaaatcctttcaaggttaccagtgaagtctcttattcgtttcaaatgtgtctgtaagtcttggttttctcttatctct 48148082  T
Q  138 --tgatcctcactttgcaaaatcgcattttga 167  Q
      |||||||||||| ||||| || ||||||||    
T  48148081 catgatcctcacttcgcaaattcacattttga 48148050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 49049061 - 49048996
Alignment:
Q  73 aggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctct 138  Q
    ||||||| ||||| ||| ||| |||||||||||||||||||||||| ||||||  |||||||||||    
T  49049061 aggttgctggtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctct 49048996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 138
Target Start/End: Original strand, 48898303 - 48898403
Alignment:
Q  38 atctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc 137  Q
    |||| |||||||||||| |||| |||||  || ||||  | || |||||||| |||| |||||||||||||||||||||||| |||||  | ||||||||    
T  48898303 atcttcctcatgaattggtcattcaaattctgctgagtctacctgtgaagtctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctc 48898402  T
Q  138 t 138  Q
    |    
T  48898403 t 48898403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 164
Target Start/End: Original strand, 7786054 - 7786150
Alignment:
Q  68 tgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgatcctcactttgcaaaatcgcattt 164  Q
    ||||||||||||||||||| || ||||||   ||||| || |||||||||  |||| |  || |||||||||||||||| |||||||| || |||||    
T  7786054 tgttgaggttgccggtgaaatctcttatattgttcaaatgcgtttgtaagctatggatttctattatctctgatcctcaatttgcaaattcacattt 7786150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 195
Target Start/End: Original strand, 47207512 - 47207672
Alignment:
Q  35 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 134  Q
    ||||||| |||||||||||||||||   |||| | ||   ||| ||||||||||| ||||||||||| ||| ||||||| ||||| || ||  |||| ||    
T  47207512 tgtatcttcctcatgaattgatcatcttaatcctattatagttaccggtgaagtctcttatacgttttaagagtgtttggaagtcttgattttctctcat 47207611  T
Q  135 ctctgatcctcactttgcaaaatcgcattttgacctttccactacaacacacactaataga 195  Q
    ||| || || || ||| | || || |||||||| ||| |||| | |||||||||| |||||    
T  47207612 ctccgacccacatttttctaattcacattttgaacttaccaccaaaacacacactcataga 47207672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 165
Target Start/End: Original strand, 48870123 - 48870250
Alignment:
Q  38 atctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc 137  Q
    |||||| ||||||||||||  | |||||  || ||||| | |||||||| || ||||| |||||||| || ||||||||||| |||||   |||||||||    
T  48870123 atctgcatcatgaattgatagttcaaattctgctgaggctaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctc 48870222  T
Q  138 tgatcctcactttgcaaaatcgcatttt 165  Q
     ||||| |  |||||||| || ||||||    
T  48870223 cgatcccctttttgcaaattcacatttt 48870250  T

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Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 165
Target Start/End: Original strand, 48885809 - 48885936
Alignment:
Q  38 atctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc 137  Q
    |||||| ||||||||||||  | |||||  || ||||| | |||||||| || ||||| |||||||| || ||||||||||| |||||   |||||||||    
T  48885809 atctgcatcatgaattgatagttcaaattctgctgaggctaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctc 48885908  T
Q  138 tgatcctcactttgcaaaatcgcatttt 165  Q
     ||||| |  |||||||| || ||||||    
T  48885909 cgatcccctttttgcaaattcacatttt 48885936  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 167
Target Start/End: Original strand, 21015355 - 21015486
Alignment:
Q  36 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatc 135  Q
    |||||||||||| ||||||||||| | ||| ||||||||||| ||||| | ||| ||| |||||||||||||||||||||||| || |||  ||||||||    
T  21015355 gtatctgcctcaagaattgatcatcctaattttgttgaggttaccggtcatgtctcttctacgtttcaagtgtgtttgtaagttattgttttctcttatc 21015454  T
Q  136 tctgatcctcactttgcaaaatcgcattttga 167  Q
    ||| |  | ||||||||||  || ||||||||    
T  21015455 tctcaaacccactttgcaatttcacattttga 21015486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 189
Target Start/End: Complemental strand, 21980144 - 21979990
Alignment:
Q  35 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 134  Q
    ||||||||||||||||| |||| ||  ||||| || | ||||  || || ||||| ||   |||||||||||||||||||||||| |||||  |||| ||    
T  21980144 tgtatctgcctcatgaactgataatcgaaatcctgctaaggtaaccagtaaagtctctctcacgtttcaagtgtgtttgtaagtcttggttttctctcat 21980045  T
Q  135 ctctgatcctcactttgcaaaatcgcattttgacctttccactacaacacacact 189  Q
    |||| ||||  ||||||| || || |||||||| ||| || |  |||||||||||    
T  21980044 ctctcatcccaactttgcgaattcacattttgatcttgccgccgcaacacacact 21979990  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 203
Target Start/End: Original strand, 29695750 - 29695898
Alignment:
Q  55 atcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgatcctcactttgcaa 154  Q
    ||||| |||||| | || ||||| || || ||||| ||||| |||||||| || |||||||||| ||||||| ||||||| ||| | |||||||||||||    
T  29695750 atcattcaaatcctattaaggttaccagtcaagtctcttattcgtttcaaatgcgtttgtaagttatggttatctcttatatctcaacctcactttgcaa 29695849  T
Q  155 aatcgcattttgacctttccactacaacacacactaatagaattgtgtt 203  Q
    | || |||||| | ||| ||||  | |||||||| ||||||||| ||||    
T  29695850 attcacattttcaacttaccaccgctacacacacgaatagaattatgtt 29695898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 165
Target Start/End: Original strand, 29687642 - 29687759
Alignment:
Q  48 tgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgatcctcac 147  Q
    |||||||||||| |||||| |  | | ||| || |||||||| |||||||| |||||||||||||||||||| |||||  |||| || ||| | ||||||    
T  29687642 tgaattgatcattcaaatccttctaaagttaccagtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcac 29687741  T
Q  148 tttgcaaaatcgcatttt 165  Q
    |||||||| || ||||||    
T  29687742 tttgcaaattctcatttt 29687759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 155
Target Start/End: Original strand, 1812006 - 1812123
Alignment:
Q  38 atctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc 137  Q
    |||| ||||| ||| ||||| | ||||| ||||||||||| || |||||||  || ||||||| ||| || |||||||||| ||||||  ||||||||||    
T  1812006 atcttcctcaggaactgatcgttcaaattttgttgaggttaccagtgaagtatctcatacgttccaaatgggtttgtaagttatggttttctcttatctc 1812105  T
Q  138 tgatcctcactttgcaaa 155  Q
      |||| |||||||||||    
T  1812106 aaatccccactttgcaaa 1812123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 29712925 - 29712866
Alignment:
Q  79 ccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctct 138  Q
    ||||||||||| ||||| ||||||||||| |||||||||| ||||||  |||||||||||    
T  29712925 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 29712866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 178647 - 178699
Alignment:
Q  85 aagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc 137  Q
    ||||| ||||| |||||||| |||||||||||||| |||||| |||| |||||    
T  178647 aagtctcttattcgtttcaaatgtgtttgtaagtcttggttatctctcatctc 178699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 37 - 165
Target Start/End: Original strand, 24309757 - 24309885
Alignment:
Q  37 tatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatct 136  Q
    ||||||||| ||||||||||||   |||||||  | || || ||||| ||||| ||||| |||||||| |  |||||||||| ||||||  |||||||||    
T  24309757 tatctgcctgatgaattgatcaccaaaatcttagtaagattaccggttaagtctcttattcgtttcaaatccgtttgtaagttatggttttctcttatct 24309856  T
Q  137 ctgatcctcactttgcaaaatcgcatttt 165  Q
    ||||| ||||||||||||| || ||||||    
T  24309857 ctgattctcactttgcaaattcacatttt 24309885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 155
Target Start/End: Original strand, 24339994 - 24340112
Alignment:
Q  37 tatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatct 136  Q
    ||||| ||| ||||||||||||   |||||||  | ||||| ||||| ||||| ||||| |||||||| | ||||||||||||||||||  | |||||||    
T  24339994 tatcttcctgatgaattgatcaccaaaatcttagtaaggttaccggttaagtctcttattcgtttcaaatctgtttgtaagtcatggttttcacttatct 24340093  T
Q  137 ctgatcctcactttgcaaa 155  Q
    |||||  ||||||||||||    
T  24340094 ctgataatcactttgcaaa 24340112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 24322078 - 24322160
Alignment:
Q  73 aggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgatcctcactttgcaaa 155  Q
    ||||||| ||||||||| ||||| |||||||| || ||||||||||| |||||  ||||||||||  ||||||  ||||||||    
T  24322078 aggttgctggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctcaaatcctcgttttgcaaa 24322160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 134
Target Start/End: Original strand, 24415417 - 24415514
Alignment:
Q  37 tatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 134  Q
    ||||||||| ||||||||||||  |||||| | ||||| || ||||| ||||| ||||| |||||||| || ||| ||||||| |||||  |||||||    
T  24415417 tatctgcctgatgaattgatcacccaaatcctattgagattaccggttaagtctcttattcgtttcaaatgcgttcgtaagtcttggttttctcttat 24415514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 24366795 - 24366853
Alignment:
Q  97 cgtttcaagtgtgtttgtaagtcatggttaactcttatctctgatcctcactttgcaaa 155  Q
    |||||||| |||||||| |||||||||||  ||||||||||  ||||| ||||||||||    
T  24366795 cgtttcaaatgtgtttgcaagtcatggttttctcttatctcaaatccttactttgcaaa 24366853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 206
Target Start/End: Original strand, 11842 - 12011
Alignment:
Q  37 tatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatct 136  Q
    ||||| ||| ||||||||||||   |||||||  | ||||| ||| | ||||| ||||| |||||||| |  |||||||||||||||||  |||||||||    
T  11842 tatcttcctgatgaattgatcaccaaaatcttagtaaggttaccgattaagtctcttatccgtttcaaatccgtttgtaagtcatggttttctcttatct 11941  T
Q  137 ctgatcctcactttgcaaaatcgcattttgacctttccactacaacacacactaatagaattgtgttctt 206  Q
    |||||  |||||||||||| || |||||| | ||| |  || |||||||||||  ||| ||| |||||||    
T  11942 ctgataatcactttgcaaattcacattttcaacttacttcttcaacacacactcgtaggattctgttctt 12011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 48883361 - 48883429
Alignment:
Q  36 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaa 104  Q
    ||||||||||| |||||| ||||| ||||| ||| ||||||| |  |||||||| ||| ||||||||||    
T  48883361 gtatctgcctcttgaattaatcattcaaattttggtgaggttacatgtgaagtctcttttacgtttcaa 48883429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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