View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12993_low_27 (Length: 240)

Name: NF12993_low_27
Description: NF12993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12993_low_27
NF12993_low_27
[»] chr3 (3 HSPs)
chr3 (1-221)||(11005768-11005988)
chr3 (1-221)||(11015331-11015551)
chr3 (1-221)||(11024343-11024563)
[»] chr8 (1 HSPs)
chr8 (35-91)||(4031858-4031914)
[»] chr4 (12 HSPs)
chr4 (35-95)||(48852734-48852794)
chr4 (147-211)||(48852825-48852889)
chr4 (40-95)||(7773776-7773831)
chr4 (55-96)||(48705329-48705370)
chr4 (55-96)||(48735352-48735393)
chr4 (34-95)||(49044140-49044201)
chr4 (34-95)||(49048526-49048587)
chr4 (40-95)||(7877801-7877856)
chr4 (40-95)||(7908392-7908447)
chr4 (55-101)||(48875922-48875968)
chr4 (37-98)||(48870600-48870661)
chr4 (37-98)||(48886286-48886347)
[»] chr5 (2 HSPs)
chr5 (168-209)||(179217-179258)
chr5 (58-95)||(179122-179159)
[»] chr6 (1 HSPs)
chr6 (158-218)||(21015979-21016039)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11005988 - 11005768
Alignment:
Q  1 tgtcctatgataaaagtatagacccaattgaagataatatttcatcacgtttgaagtttttctcattgagagcgaatacatggaaagaaattgagtgtcc 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  11005988 tgtcctatgataaaagtgtagacccaattgaagataatatttcatcacgtttgaagtttttctcattgagagcgaatacatggaaagaaattgagtgtca 11005889  T
Q  101 tggattggtgaagtatactcatttcccttattatatgaatgcaaatgatgatcccaaggtagggacgctttttaatgggactattcattggttctctttt 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11005888 tggattggtgaagtatactcacttcccttattatatgaatgcaaatgatgatcccaaggtagggacgctttttaatgggactattcattggttctctttt 11005789  T
Q  201 cgccatgatttgtcaatggat 221  Q
    |||||||||||||||||||||    
T  11005788 cgccatgatttgtcaatggat 11005768  T

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Target: chr3; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11015551 - 11015331
Alignment:
Q  1 tgtcctatgataaaagtatagacccaattgaagataatatttcatcacgtttgaagtttttctcattgagagcgaatacatggaaagaaattgagtgtcc 100  Q
    |||||||| ||| ||||||||||||| | || ||||||||||| |||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  11015551 tgtcctataatacaagtatagacccagtagacgataatatttcttcacatttgaagtttttctcattgagagctaatacatggaacgaaattgagtgtcc 11015452  T
Q  101 tggattggtgaagtatactcatttcccttattatatgaatgcaaatgatgatcccaaggtagggacgctttttaatgggactattcattggttctctttt 200  Q
    |||||| || ||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||    
T  11015451 tggatttgtaaagtataatcacttcccttattatatgaatgcaaatgatgatcccaaagtagggatgctctttaatgggactattcattggttctctttt 11015352  T
Q  201 cgccatgatttgtcaatggat 221  Q
    ||||||||||| |||||||||    
T  11015351 cgccatgatttatcaatggat 11015331  T

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Target: chr3; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11024563 - 11024343
Alignment:
Q  1 tgtcctatgataaaagtatagacccaattgaagataatatttcatcacgtttgaagtttttctcattgagagcgaatacatggaaagaaattgagtgtcc 100  Q
    ||||||||||||| |||||||||| ||||||||| ||||||||||||| ||||||||||||||| |||||||| ||||||||||| |||||||||||||     
T  11024563 tgtcctatgataagagtatagacctaattgaagaaaatatttcatcacatttgaagtttttctctttgagagctaatacatggaacgaaattgagtgtct 11024464  T
Q  101 tggattggtgaagtatactcatttcccttattatatgaatgcaaatgatgatcccaaggtagggacgctttttaatgggactattcattggttctctttt 200  Q
    |||||||||||||||||  || ||||||||||||||||||| ||||||||||||||  |||||||| || |||||||||| |||||||||||||||||||    
T  11024463 tggattggtgaagtataagcacttcccttattatatgaatgtaaatgatgatcccacagtagggacactctttaatgggaatattcattggttctctttt 11024364  T
Q  201 cgccatgatttgtcaatggat 221  Q
    ||| ||||||| |||||||||    
T  11024363 cgcaatgatttatcaatggat 11024343  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 4031914 - 4031858
Alignment:
Q  35 taatatttcatcacgtttgaagtttttctcattgagagcgaatacatggaaagaaat 91  Q
    |||||||||||||| |||| ||||||||||| ||||||| || ||||||||||||||    
T  4031914 taatatttcatcacatttggagtttttctcactgagagccaacacatggaaagaaat 4031858  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 48852734 - 48852794
Alignment:
Q  35 taatatttcatcacgtttgaagtttttctcattgagagcgaatacatggaaagaaattgag 95  Q
    |||| ||||||||| |||  ||||||||||||||||||| ||| |||||||||||||||||    
T  48852734 taatgtttcatcacatttagagtttttctcattgagagctaatgcatggaaagaaattgag 48852794  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 48852825 - 48852889
Alignment:
Q  147 gatgatcccaaggtagggacgctttttaatgggactattcattggttctcttttcgccatgattt 211  Q
    ||||||||||  |||||| |||||||||||||| |||||||||||||  ||||||| ||||||||    
T  48852825 gatgatcccagagtagggtcgctttttaatggggctattcattggttggcttttcgtcatgattt 48852889  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 7773831 - 7773776
Alignment:
Q  40 tttcatcacgtttgaagtttttctcattgagagcgaatacatggaaagaaattgag 95  Q
    ||||| |||||||||||||||||||||| ||||  |||||||||||||||| ||||    
T  7773831 tttcaacacgtttgaagtttttctcatttagagataatacatggaaagaaactgag 7773776  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 48705370 - 48705329
Alignment:
Q  55 agtttttctcattgagagcgaatacatggaaagaaattgagt 96  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  48705370 agtttttctcattgagagttaatacatggaaagaaattgagt 48705329  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 48735393 - 48735352
Alignment:
Q  55 agtttttctcattgagagcgaatacatggaaagaaattgagt 96  Q
    ||||||||||||||||||| ||||| ||||||||||||||||    
T  48735393 agtttttctcattgagagctaatacctggaaagaaattgagt 48735352  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 49044201 - 49044140
Alignment:
Q  34 ataatatttcatcacgtttgaagtttttctcattgagagcgaatacatggaaagaaattgag 95  Q
    |||||||||||| || |||| ||||||||||||||||||  |||| |||||| |||||||||    
T  49044201 ataatatttcattacatttggagtttttctcattgagagataatagatggaatgaaattgag 49044140  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 49048587 - 49048526
Alignment:
Q  34 ataatatttcatcacgtttgaagtttttctcattgagagcgaatacatggaaagaaattgag 95  Q
    ||||| ||||||||| |||| |||||||||| |||||||  |||| ||||||||||||||||    
T  49048587 ataatttttcatcacatttggagtttttctcgttgagagataatatatggaaagaaattgag 49048526  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 7877801 - 7877856
Alignment:
Q  40 tttcatcacgtttgaagtttttctcattgagagcgaatacatggaaagaaattgag 95  Q
    ||||| ||| |||||||||||||||||| ||||  |||||||||||||||| ||||    
T  7877801 tttcaacacatttgaagtttttctcatttagagataatacatggaaagaaactgag 7877856  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 7908392 - 7908447
Alignment:
Q  40 tttcatcacgtttgaagtttttctcattgagagcgaatacatggaaagaaattgag 95  Q
    ||||| ||| |||||||||||||||| | ||||  |||||||||||||||||||||    
T  7908392 tttcaacacatttgaagtttttctcagttagagataatacatggaaagaaattgag 7908447  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 48875922 - 48875968
Alignment:
Q  55 agtttttctcattgagagcgaatacatggaaagaaattgagtgtcct 101  Q
    ||||||||||||||||||| ||||| |||| | ||||||||||||||    
T  48875922 agtttttctcattgagagccaatacctggatacaaattgagtgtcct 48875968  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 48870600 - 48870661
Alignment:
Q  37 atatttcatcacgtttgaagtttttctcattgagagcgaatacatggaaagaaattgagtgt 98  Q
    ||||||||||||  ||  ||||||||||||||||||| ||||| |||| | |||||||||||    
T  48870600 atatttcatcacacttcgagtttttctcattgagagccaatacctggatacaaattgagtgt 48870661  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 48886286 - 48886347
Alignment:
Q  37 atatttcatcacgtttgaagtttttctcattgagagcgaatacatggaaagaaattgagtgt 98  Q
    ||||||||||||  ||  ||||||||||||||||||| ||||| |||| | |||||||||||    
T  48886286 atatttcatcacacttcgagtttttctcattgagagccaatacctggatacaaattgagtgt 48886347  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 179217 - 179258
Alignment:
Q  168 ctttttaatgggactattcattggttctcttttcgccatgat 209  Q
    |||||||||||| |||||||||||||||||||||| ||||||    
T  179217 ctttttaatggggctattcattggttctcttttcgtcatgat 179258  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 95
Target Start/End: Original strand, 179122 - 179159
Alignment:
Q  58 ttttctcattgagagcgaatacatggaaagaaattgag 95  Q
    |||||||||||||||  |||||||||||||||||||||    
T  179122 ttttctcattgagagataatacatggaaagaaattgag 179159  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 21015979 - 21016039
Alignment:
Q  158 ggtagggacgctttttaatgggactattcattggttctcttttcgccatgatttgtcaatg 218  Q
    ||||||| || ||||||||||| |||||||||||||  ||||||| |||||||| ||||||    
T  21015979 ggtagggtcggtttttaatggggctattcattggttggcttttcgtcatgatttatcaatg 21016039  T

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