View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12993_low_3 (Length: 655)
Name: NF12993_low_3
Description: NF12993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12993_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-175; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 264 - 637
Target Start/End: Original strand, 16193519 - 16193889
Alignment:
| Q |
264 |
taatagtagagattaaattgacgtattttatatattgtagagactatttagtatatttacatagtttagaaagtaaattaaaaagaaaagtaatagttta |
363 |
Q |
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| T |
16193519 |
taatagcagagactaaattaatgtattttatatattttagggactatttagtatatttacatagtttagaaagtaaattaaaaagaaaagtaatagttta |
16193618 |
T |
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| Q |
364 |
ggaagtaaattgattgttttattctaactttacaattcaatatcaactttttgcttttgaagttcaagtaccaatggttttaaccttttttcagaagcac |
463 |
Q |
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| T |
16193619 |
ggaagtaaattgattgttttattctaactttacaattctatataaactttttgcttttgaagttcaagtaccaatggttttaaccttttttcagaagcac |
16193718 |
T |
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| Q |
464 |
ggtttgttggtatatttttctactttagtggtttcttatgtgtctgtactttatagttcttgaaatttatgttcatttttggtctaattgaaattggtta |
563 |
Q |
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| T |
16193719 |
ggtttgttggcatatttttctactttagtggtttcttatgtgtctgtactttatagttcttgaaatttatgttcatttttggtctaattgaaattgg--- |
16193815 |
T |
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| Q |
564 |
ttacatccctgttttttacagacaccacataatctcctttagttttaattttcttaaagagaaaggcataaaac |
637 |
Q |
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| T |
16193816 |
ttacatccctgttttttacagacaccacataatctcctttatttttacctttcttaaagagaaaggcataaaac |
16193889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 16193230 - 16193475
Alignment:
| Q |
15 |
tatgaaggtcgggggtttgatccccactctcagcataatgctaaaattagtaatgatattaatattagccgtttcaactctctcaatcgtaacctaacat |
114 |
Q |
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| T |
16193230 |
tatgaaggccgggggtttgatccccactctcagcataatgctaaaattagtaataatattaatattagccgtttcaactctctaagtcgtaacctaacat |
16193329 |
T |
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| Q |
115 |
atgagcaattgctctcctatgttatgctcgagcgtctgcccactaatatatccacnnnnnnnnnncttcttgg---ggggtggttggggcttggtaaggt |
211 |
Q |
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| T |
16193330 |
atgagcaattgctctcctatgttatgctcgagcgtctgcccactaatatatccactttttttttccttcttggggtggggtggttggggcttggtaagat |
16193429 |
T |
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| Q |
212 |
tctctctcttaagcgccgaacttatgattggtgaagttaaattgaa |
257 |
Q |
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| T |
16193430 |
tctctctcttaagcgcccaactcatgattggtgaagctaaattgaa |
16193475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 50213319 - 50213380
Alignment:
| Q |
263 |
ttaatagtagagattaaattgacgtattttatatattgtagagactatttagtatatttaca |
324 |
Q |
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| T |
50213319 |
ttaatagcagagactaaattggcgggttttatatattttagaaactatttattatatttaca |
50213380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 263 - 299
Target Start/End: Complemental strand, 6364903 - 6364867
Alignment:
| Q |
263 |
ttaatagtagagattaaattgacgtattttatatatt |
299 |
Q |
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| T |
6364903 |
ttaatagtagagattaaattgacgaattttatatatt |
6364867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 342
Target Start/End: Complemental strand, 32708762 - 32708697
Alignment:
| Q |
277 |
taaattgacgtattttatatattgtagagactatttagtatatttacatagtttagaaagtaaatt |
342 |
Q |
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|||||||||| ||||||||| ||||||||||| ||| ||||||| |||||||||| | |||||| |
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| T |
32708762 |
taaattgacgatttttatatagtgtagagactagttattatatttgtatagtttagagactaaatt |
32708697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 263 - 299
Target Start/End: Original strand, 5653893 - 5653929
Alignment:
| Q |
263 |
ttaatagtagagattaaattgacgtattttatatatt |
299 |
Q |
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|||||||| ||||||||||||||| |||||||||||| |
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| T |
5653893 |
ttaatagttgagattaaattgacgaattttatatatt |
5653929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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