View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12993_low_4 (Length: 543)
Name: NF12993_low_4
Description: NF12993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12993_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 19 - 532
Target Start/End: Complemental strand, 29669347 - 29668834
Alignment:
| Q |
19 |
acctctccggtttaaattccaagcaatcttccccccatattttctccatcctcccaacagaataaatggaatatgtaacagttgaacccgctggaatcac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29669347 |
acctctccggtttaaattccaagcaatcttccccccatattttctccatcctcccaacagaataaatggaatatgtaacagttgaacccgctggaatcac |
29669248 |
T |
|
| Q |
119 |
cgttccatcggggaaaacatcgtccacaaccgcctgcttgatatcctgcggcactgatggatacaatcgcagtgtttccgccaatgctgctttcaaataa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29669247 |
cgttccatcggggaaaacatcgtccacaaccgcctgcttgatatcctgcggcactgatggatacaaacgcagtgtttccgccaatgctgctttcaaataa |
29669148 |
T |
|
| Q |
219 |
accatttgatccgcttcactgaaatcaagcggatcctctgtccatttccgcttttcccctcctcgagtttcctcaagaacagtggttaactccttgatta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29669147 |
accatttgatccgcttcactgaaatcaagcggatcctctgtccatttccgcttttcccctcctcgagtttcctcaagaacagtggttaactccttgatta |
29669048 |
T |
|
| Q |
319 |
ttttctcctcaacttttggatggttcatgaccagccagaagaaccagctgagagcaactgatgacgtgtcccttccagcaaggatgaagtttaagatgat |
418 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29669047 |
ttttctcctcaactttcggatggttcatgaccagccagaagaaccagctgagagcaactgatgacgtgtcccttccagcaaggatgaagtttaagatgat |
29668948 |
T |
|
| Q |
419 |
gtgttgtagaatcgtggcgttgattggctttccgtctatgtctcgtttcttcatgaaacgtgacattaagtcgtcagaaggggtttccttacgatctgaa |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29668947 |
gtgttgtagaatcgtggcgttgattggctttccgtctatgtctcgtttcttcatgaaacgtgacattaagtcatcagaaggggtttccttacgatctgaa |
29668848 |
T |
|
| Q |
519 |
atggcgttgttcat |
532 |
Q |
| |
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|||||||||||||| |
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| T |
29668847 |
atggcgttgttcat |
29668834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 25244168 - 25244050
Alignment:
| Q |
24 |
tccggtttaaattccaagcaatcttccccccatattttctccatcctcccaacagaataaatggaatatgtaacagttgaacccgctggaatcaccgttc |
123 |
Q |
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|||||||||||||||| ||||||||| ||||||| ||| ||| || ||||| ||||| || |||||||| || ||||||||||| |||| |||||||| |
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| T |
25244168 |
tccggtttaaattccatgcaatcttcaccccatacactcttcattcttccaactgaatatatcgaatatgtcaccgttgaacccgccggaaccaccgttc |
25244069 |
T |
|
| Q |
124 |
catcggggaaaacatcgtc |
142 |
Q |
| |
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| || || ||||||||||| |
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| T |
25244068 |
cgtctggtaaaacatcgtc |
25244050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 36668176 - 36668232
Alignment:
| Q |
19 |
acctctccggtttaaattccaagcaatcttccccccatattttctccatcctcccaa |
75 |
Q |
| |
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||||||| ||||||||||||||||||||||| |||||||||| ||||| ||| |||| |
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| T |
36668176 |
acctctctggtttaaattccaagcaatcttctccccatatttcctccacccttccaa |
36668232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 409
Target Start/End: Complemental strand, 11315194 - 11315133
Alignment:
| Q |
348 |
accagccagaagaaccagctgagagcaactgatgacgtgtcccttccagcaaggatgaagtt |
409 |
Q |
| |
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|||| ||| ||||||||||| | ||||||||||||||||| | |||||| ||||||||||| |
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| T |
11315194 |
accaaccaaaagaaccagctcaacgcaactgatgacgtgtcacgtccagctaggatgaagtt |
11315133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 12164324 - 12164365
Alignment:
| Q |
19 |
acctctccggtttaaattccaagcaatcttccccccatattt |
60 |
Q |
| |
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||||||| || |||||||||||||||||||| |||||||||| |
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| T |
12164324 |
acctctctggcttaaattccaagcaatcttctccccatattt |
12164365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 13065352 - 13065303
Alignment:
| Q |
21 |
ctctccggtttaaattccaagcaatcttccccccatattttctccatcct |
70 |
Q |
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||||| || |||||||||| ||| ||||| |||||||||||||||||||| |
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| T |
13065352 |
ctctcaggcttaaattccatgcagtcttctccccatattttctccatcct |
13065303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 30368247 - 30368198
Alignment:
| Q |
21 |
ctctccggtttaaattccaagcaatcttccccccatattttctccatcct |
70 |
Q |
| |
|
||||| || |||||||||| ||||||||| ||||||||||| |||||||| |
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|
| T |
30368247 |
ctctcaggcttaaattccatgcaatcttctccccatattttttccatcct |
30368198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 12964005 - 12963965
Alignment:
| Q |
30 |
ttaaattccaagcaatcttccccccatattttctccatcct |
70 |
Q |
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|||||||||||||||||||| |||||||||| |||||||| |
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| T |
12964005 |
ttaaattccaagcaatcttctccccatatttgttccatcct |
12963965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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