View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12993_low_5 (Length: 503)
Name: NF12993_low_5
Description: NF12993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12993_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 37096077 - 37095591
Alignment:
| Q |
1 |
accatatacaattgaattcaaatattctatttaagatgaaggaagggtttcattactcaccaactaacataggatcaatatgttcnnnnnnncttgcaga |
100 |
Q |
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| T |
37096077 |
accatatacaattgaattcaaatattctatttaagatgaaggaagggtttcattactcaccaactaacataggatcaatatgttcaaaaaaacttgcaga |
37095978 |
T |
|
| Q |
101 |
aactatcaaatagcaaagaataagcaccatccctttgaagtagtttgaagttccattctgcatttcgaaacaaagttcaagttgtaaggtttaaatgtga |
200 |
Q |
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| T |
37095977 |
aactatcaaatagcaaagaataagcacaatccctttgaagtagtttgaagttccattctgcatttcgaaacaaagttcaagttgtaaggtttaaatgtga |
37095878 |
T |
|
| Q |
201 |
ttatccacttgttattgatactatcatggcatatatatagccaattacacaagggattaattgtctctgttcttacttgtattacaagtaacgtgccaag |
300 |
Q |
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| T |
37095877 |
ttatccacttgttattgatactatcatggcatatatatagccaattacacaagggattaattgtctctgttcttacttgtattacaagtaacgtgccaag |
37095778 |
T |
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| Q |
301 |
taaggactaactaaacaattaacactaatagtcctaacacagtaaagatcaagtctataaagatataactggttcatataagacattactgaagacaaaa |
400 |
Q |
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| T |
37095777 |
taaggactaactaaacaattaacactaatagtcctaacacagtaaagatcaagtctataaagatataagtggttcatataagacattactgaagacaaaa |
37095678 |
T |
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| Q |
401 |
acttagtacaaaatcatttgtagtatactcaacaaattacggagaaggaatttagttcagtgattgacttacttgcaacatgaaggc |
487 |
Q |
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| T |
37095677 |
acttagtacaaaatcatttgtagtatactcaacaaattacggagaaggaatttagttcagtgattgacttacttgcaacatgaaggc |
37095591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 336
Target Start/End: Original strand, 13051384 - 13051474
Alignment:
| Q |
246 |
tacacaagggattaattgtctctgttcttacttgtattacaagtaacgtgccaagtaaggactaactaaacaattaacactaatagtccta |
336 |
Q |
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||||||||||| | || || | ||| |||||||| |||||||||||| ||| ||||||||| ||| || |||||||||| ||||| ||||| |
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| T |
13051384 |
tacacaagggagtgatagtttatgtccttacttgcattacaagtaacatgctaagtaaggattaattacacaattaacaataatattccta |
13051474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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