View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12993_low_6 (Length: 487)
Name: NF12993_low_6
Description: NF12993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12993_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 232 - 471
Target Start/End: Original strand, 41653999 - 41654240
Alignment:
| Q |
232 |
caacagaatgagtacaaaagaataatatcacctctgaaatatcagacaagatgtgttgctgcttttccagatcaacaaggttttt-ggtatgtattcact |
330 |
Q |
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| T |
41653999 |
caacagaatgagtacaaaagaataatatcacctctgaaatatcagacaagatgtgtcgctgcttttcctgatcaacaaggttttttggtatgtattcact |
41654098 |
T |
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| Q |
331 |
cctcacttacattcaaatacagttttgttttattt-atttaattccatcactgtactgatgtgggtcaattctacacttggattggagcttgtatgtgga |
429 |
Q |
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| T |
41654099 |
cctcacttacattcaaatacagttttgttttattttatttaattccatcactgtactgatgtgggtcaattctacacttggattggagcttgtatgtgaa |
41654198 |
T |
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| Q |
430 |
gactctaattagctcattgtagtgcagtatttagacaattgg |
471 |
Q |
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| T |
41654199 |
gactctaattagctcattgtagtgcagtatttagagaattgg |
41654240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 41653775 - 41653957
Alignment:
| Q |
1 |
ctgataggaatctcattgtcttcaacttgcagaatcctcaggtcttataattcattctaaaataaattttcataatgctgttgctta--gctttgtacga |
98 |
Q |
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| T |
41653775 |
ctgataggaatcttattgtcttcaacttgcagaatcctcaggtcttataa---------------attttcataatgctgttgcttatagctttgtacgg |
41653859 |
T |
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| Q |
99 |
aataggtcggtttccaat------cttataatttttcaacatcatgtgaaatctgctttttctctacgtgagtagttattgatttcaataaatgtcga |
190 |
Q |
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| T |
41653860 |
aataggtcggtttccaattagttgcttataatttttcaacatcatgtgaaatctgctttttctctacgtgagtagttattgatttcaataaatgtcga |
41653957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 232 - 354
Target Start/End: Complemental strand, 28816819 - 28816696
Alignment:
| Q |
232 |
caacagaatgagtacaaaagaataatatcacctctgaaatatcagacaagatgtgttgctgcttttccagatcaacaagg-tttttggtatgtattcact |
330 |
Q |
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||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||| |
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| T |
28816819 |
caacagactgagtacaaaaggatagtatcacccctgaaatatcagacaagatgtgttgctgcttttccagatcagcaaggttttttggtatgtactcact |
28816720 |
T |
|
| Q |
331 |
cctcacttacattcaaatacagtt |
354 |
Q |
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|||||||| |||||| |||||||| |
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| T |
28816719 |
cctcacttgcattcagatacagtt |
28816696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 28818076 - 28818036
Alignment:
| Q |
3 |
gataggaatctcattgtcttcaacttgcagaatcctcaggt |
43 |
Q |
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| T |
28818076 |
gataggaatctgattgtcttcaacttgcagaatcctcaggt |
28818036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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