View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12993_low_7 (Length: 487)
Name: NF12993_low_7
Description: NF12993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12993_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 18 - 469
Target Start/End: Complemental strand, 31127966 - 31127515
Alignment:
| Q |
18 |
ataaaataagatttcattcatttgtgctgccacgcttctcaatctttaccgggaagccacctttcattatcgaagtaaggtgtgcagcgaactctggctc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31127966 |
ataaaataagatttcattcatttgtgctgccacgcttctcaatctttaccaggaagccacctttcattatcgaagtaaggtgtgcagcgaactccggctc |
31127867 |
T |
|
| Q |
118 |
aacccctttatccattgcaggaaccaccctaaactgcctcatgatcccagcaaccacccttttcatctgcaagaacgccatttcctttcccaaacacacc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31127866 |
aacccctttatccattgcaggaaccaccctaaactgcctcatgatcccggcaaccacccttttcatctgcaagaacgccatttcctttcctaaacacacc |
31127767 |
T |
|
| Q |
218 |
cttggcccagcctgaaaaaccgcataactataaggatccatcccaataaagctccactttccatcatcaacttggctcaaccatctctcaggtcgaaact |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31127766 |
cttggcccagcctgaaaaaccgcataactataaggatccatcccaataaagctccactttccatcatcaacttgactcaaccatctctcaggtcgaaact |
31127667 |
T |
|
| Q |
318 |
cagcccaatcgggtccccatattttctcggaccttcccatagcatatatatgatatgtcaccctccaccctttcttcactaaagttccatccggcaaaac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31127666 |
cagcccaatcgggtccccatattttctcggaccttcccatagcatatatatgatatgtcaccctccaccctttcttcactaaagttccatccggcaaaac |
31127567 |
T |
|
| Q |
418 |
gtcgtcagaagccgcttccttaccatccacgggaaccggaggatacagtctc |
469 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31127566 |
gtcgtcacaagccgcttccttaccatccacgggaaccggaggatacagtctc |
31127515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 50 - 417
Target Start/End: Complemental strand, 31078616 - 31078249
Alignment:
| Q |
50 |
cgcttctcaatctttaccgggaagccacctttcattatcgaagtaaggtgtgcagcgaactctggctcaacccctttatccattgcaggaaccaccctaa |
149 |
Q |
| |
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||||||||||| |||||| ||||||||||||||| | || |||||||||||| | |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31078616 |
cgcttctcaattcttaccgagaagccacctttcatcaatgaggtaaggtgtgcaatgtactccggctcaacccctttatccattgcaggaaccaccctaa |
31078517 |
T |
|
| Q |
150 |
actgcctcatgatcccagcaaccacccttttcatctgcaagaacgccatttcctttcccaaacacacccttggcccagcctgaaaaaccgcataactata |
249 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |
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| T |
31078516 |
actgcctcatgatccctgcaaccaccctcttcatctgcaagaacgccatttcctttcctaaacacaccctcggcccagcttgaaaaaccgcataactata |
31078417 |
T |
|
| Q |
250 |
aggatccatcccaataaagctccactttccatcatcaacttggctcaaccatctctcaggtcgaaactcagcccaatcgggtccccatattttctcggac |
349 |
Q |
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|||||||||||||||||| |||||||| ||||| ||| |||| |||||||| ||||| |||||||||||||||||||| |||||||||||||||| ||| |
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| T |
31078416 |
aggatccatcccaataaaactccacttcccatcctcatcttgactcaaccacctctccggtcgaaactcagcccaatcaagtccccatattttctccgac |
31078317 |
T |
|
| Q |
350 |
cttcccatagcatatatatgatatgtcaccctccaccctttcttcactaaagttccatccggcaaaac |
417 |
Q |
| |
|
||||||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||| |||||||| |
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|
| T |
31078316 |
cttcccatagcatatatatgatacgccactctccaccctttcttcacaaaagttccatctggcaaaac |
31078249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 50 - 447
Target Start/End: Complemental strand, 31132645 - 31132245
Alignment:
| Q |
50 |
cgcttctcaatctttaccgggaagccacctttcattatcgaagtaaggtgtgcagcgaactctggctcaacccctttatccattgcaggaaccaccctaa |
149 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| || |||||||| |||| | | ||| |||| |||||||||| |||||| || |||| || ||||| |
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| T |
31132645 |
cgcttcttgatctttaccggaaagccacctttcataattgaagtaagatgtgaatcaaacactggttcaaccccttcatccatcgctggaagcaacctaa |
31132546 |
T |
|
| Q |
150 |
actgcctcatgatcccagcaaccaccctt---ttcatctgcaagaacgccatttcctttcccaaacacacccttggcccagcctgaaaaaccgcataact |
246 |
Q |
| |
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||| ||| || || ||| |||||| ||| ||||| | |||||||||||||| || || ||||||||||| |||||||| ||||||| || |||| | |
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| T |
31132545 |
actcccttataatgccaacaaccaacctgatcttcatttctaagaacgccatttctttccctaaacacaccctcggcccagcttgaaaaatcggataagt |
31132446 |
T |
|
| Q |
247 |
ataaggatccatcccaataaagctccactttccatcatcaacttggctcaaccatctctcaggtcgaaactcagcccaatcgggtccccatattttctcg |
346 |
Q |
| |
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||||||||||||||||| ||||||||| |||||||| ||| || | |||||||| |||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
31132445 |
ataaggatccatcccaacaaagctccattttccatcgtcagctcgactcaaccacctctcaggtcaaaactcagcccaatcggatccccatattttctca |
31132346 |
T |
|
| Q |
347 |
gaccttcccatagcatatatatgatatgtcaccctccaccctttcttcactaaagttccatccggcaaaacgtcgtcagaagccgcttccttaccatcca |
446 |
Q |
| |
|
|||||||||||| |||||| |||||| | || ||||||||||||||||||| |||||||| |||||||| || || | || ||||||||| |||||| |
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| T |
31132345 |
gaccttcccataacatatacatgatacgcaactatccaccctttcttcactaatgttccatctggcaaaacatcatcgtaggctgcttccttagcatcca |
31132246 |
T |
|
| Q |
447 |
c |
447 |
Q |
| |
|
| |
|
|
| T |
31132245 |
c |
31132245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 164 - 255
Target Start/End: Complemental strand, 38643038 - 38642947
Alignment:
| Q |
164 |
ccagcaaccacccttttcatctgcaagaacgccatttcctttcccaaacacacccttggcccagcctgaaaaaccgcataactataaggatc |
255 |
Q |
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|||||||| | ||||||||| |||| || |||||||| || |||||||| | ||| ||||||||||||||||||| |||| || ||||||| |
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| T |
38643038 |
ccagcaacaatccttttcatttgcataaatgccatttctttccccaaacaaatcctcggcccagcctgaaaaaccggataagtaaaaggatc |
38642947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 164 - 255
Target Start/End: Complemental strand, 38655946 - 38655855
Alignment:
| Q |
164 |
ccagcaaccacccttttcatctgcaagaacgccatttcctttcccaaacacacccttggcccagcctgaaaaaccgcataactataaggatc |
255 |
Q |
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|||||||| | ||||||||| |||| || |||||||| || |||||||| | ||| ||||||||||||||||||| |||| || ||||||| |
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| T |
38655946 |
ccagcaacaatccttttcatttgcataaatgccatttctttccccaaacaaatcctcggcccagcctgaaaaaccggataagtaaaaggatc |
38655855 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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