View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12994_high_2 (Length: 598)

Name: NF12994_high_2
Description: NF12994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12994_high_2
NF12994_high_2
[»] chr4 (1 HSPs)
chr4 (9-583)||(11120024-11120598)
[»] chr5 (15 HSPs)
chr5 (9-446)||(42130472-42130912)
chr5 (9-446)||(42125238-42125687)
chr5 (134-452)||(41711696-41712014)
chr5 (56-446)||(34238773-34239166)
chr5 (56-446)||(34230718-34231123)
chr5 (148-446)||(42118787-42119089)
chr5 (160-446)||(41569932-41570218)
chr5 (513-583)||(42125742-42125812)
chr5 (502-571)||(42130953-42131022)
chr5 (501-571)||(41711583-41711653)
chr5 (501-547)||(34230632-34230678)
chr5 (501-547)||(34238687-34238733)
chr5 (501-546)||(42119138-42119183)
chr5 (283-446)||(41446145-41446308)
chr5 (283-349)||(41433421-41433487)
[»] chr6 (2 HSPs)
chr6 (8-446)||(25520938-25521385)
chr6 (501-568)||(25520819-25520886)
[»] chr3 (2 HSPs)
chr3 (131-446)||(8524827-8525142)
chr3 (501-583)||(8525203-8525285)
[»] chr2 (2 HSPs)
chr2 (135-446)||(12250197-12250508)
chr2 (520-571)||(12250522-12250573)


Alignment Details
Target: chr4 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 9 - 583
Target Start/End: Original strand, 11120024 - 11120598
Alignment:
Q  9 agcaaaggaaaggagtttggtcttattgaagacatattagttctatacaaaaacagctcttgtaaatctgttgcattttgcagcagtctgttcaaggtaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11120024 agcaaaggaaaggagtttggtcttattgaagacatattagttctatacaaaaacagctcttgtaaatctgttgcattttgcagcagtctgttcaaggtga 11120123  T
Q  109 tctctttcaaaactaactcattcccagagagataaagtgattgtaatttggaaagatatgagatttgagttggaatttcaccataaaagttactataaga 208  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11120124 tctctttcaaaactaactcattcccagagagataaagggattgtaatttggaaagatatgagatttgagttggaatttcaccataaatgttactataaga 11120223  T
Q  209 caagtaaagatgtgtaagactccgaaacccaccaaacttagaatgaaaatgagagccggagaaattattgtatacaaggttgagtgtttggagatgaaca 308  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11120224 caagtaaagatgtgtaagactctgaaacccaccaaacttagaatgaaaacgagagccggagaaattattgtatacaaggttgagtgtttggagatgaaca 11120323  T
Q  309 agatggaaaagggtactattcggatgtaatataccttgaagaccttcacagccaagattgaggccaatcacgcgaccagagatggtgtcgcacgtgacac 408  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11120324 agatggaaaagggtactattcggatgtaatatgccttgaagaccttcacagccaagattgaggccaatcacgcgaccagagatggtgtcgcacgtgacac 11120423  T
Q  409 cattccatgagcagcaatcagtcccatttttccatgttattgttgaaggttcattaccagtgcaataaccaaaagaggtagaagataacaacgtgaagga 508  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||    
T  11120424 cattccatgagcagcaatcagtcccatttttccatgttgttgttgaaggttcattaccggtgcaataatcaaaagaggtagaagataataacgtgaagga 11120523  T
Q  509 ggacttgaactgaagcaaagcagagctctcatcgtgatggcatgaaaaattgaaagaagaagagaatgatggaaa 583  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11120524 ggactcgaactgaagcaaagcaaagctctcatcgtgatggcatgaaaaattgaaagaagaagagaataatggaaa 11120598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 446
Target Start/End: Original strand, 42130472 - 42130912
Alignment:
Q  9 agcaaaggaaaggagtttggtcttattgaagacatattagttctatacaaaaacagctcttgtaaatctgttgcattttgcagcagtctgttcaaggtaa 108  Q
    ||||||| || ||||||||||||||||||||||||||  ||    | ||||||||||||| ||||||||||||||||||||| ||| || |||||||||     
T  42130472 agcaaagcaatggagtttggtcttattgaagacatatctgtggagtccaaaaacagctctcgtaaatctgttgcattttgcaacagcctcttcaaggtag 42130571  T
Q  109 tctctttcaaaactaactcat---tcccagagagataaagtgattgtaatttggaaagatatgagatttgagttggaatttcaccataaaagttactata 205  Q
    |||||||| ||| ||| ||||   |  ||||||||| |||||||||||||||||| || |  ||||||||||||||||||||||| |  ||||||||||     
T  42130572 tctctttccaaattaagtcataattttcagagagatgaagtgattgtaatttggataggtgagagatttgagttggaatttcaccttctaagttactatc 42130671  T
Q  206 agacaagtaaagatgtgtaagactccgaaacccaccaaacttagaatgaaaatgagagccggagaaattattgtatacaaggttgagtgtttggagatga 305  Q
    |||||||| |||||||||||||||| |||| |||| ||||||| |||||||||||||| |  |||||| ||||||   ||||||||||||||||||||||    
T  42130672 agacaagtcaagatgtgtaagactctgaaatccacaaaacttataatgaaaatgagagtcaaagaaatcattgtaagaaaggttgagtgtttggagatga 42130771  T
Q  306 acaagatggaaaagggtactattcggatgtaatataccttgaagaccttcacagccaagattgaggccaatcacgcgaccagagatggtgtcgcacgtga 405  Q
    |||||||| |||||||||||||| ||||  ||| |||||  ||| |||||||||||||| |||||| |||||||| |||||||||  ||||| |||||||    
T  42130772 acaagatgaaaaagggtactattaggattgaatgtacctgtaaggccttcacagccaaggttgaggtcaatcacgtgaccagagactgtgtcacacgtga 42130871  T
Q  406 caccattccatgagcagcaatcagtcccatttttccatgtt 446  Q
    | |||||||||||||||||||||||||||||||||||||||    
T  42130872 cgccattccatgagcagcaatcagtcccatttttccatgtt 42130912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 446
Target Start/End: Original strand, 42125238 - 42125687
Alignment:
Q  9 agcaaaggaaaggagtttggtcttattgaagacatattagttctatacaaaaacagctcttgtaaatctgttgcattttgcagcagtctgttcaaggtaa 108  Q
    ||||||| || ||||||||||||||||||||||||||| ||  ||| ||||||||||||    |||| |||||||||||| |  | ||| ||||||||      
T  42125238 agcaaagcaatggagtttggtcttattgaagacatatttgtattatccaaaaacagctccctcaaatttgttgcattttgaacaaatctcttcaaggtcg 42125337  T
Q  109 tctctttcaaaactaactcattc------------ccagagagataaagtgattgtaatttggaaagatatgagatttgagttggaatttcaccataaaa 196  Q
    |||||||| ||||||||| ||              |||||||||| ||||||||||||||||||||| | |||||||||| ||||||||||||| | |||    
T  42125338 tctctttccaaactaactgatcataaccggtatatccagagagatgaagtgattgtaatttggaaaggtgtgagatttgaattggaatttcacctttaaa 42125437  T
Q  197 gttactataagacaagtaaagatgtgtaagactccgaaacccaccaaacttagaatgaaaatgagagccggagaaattattgtatacaaggttgagtgtt 296  Q
    |  ||||  |||||||| |||||||| |||||||  |||||||||||||||||||||||||||||||   ||||||| |||||    |||||||||||||    
T  42125438 gaaactacgagacaagtcaagatgtgcaagactcataaacccaccaaacttagaatgaaaatgagagtaagagaaatcattgttagaaaggttgagtgtt 42125537  T
Q  297 tggagatgaacaagatggaaaagggtactattcggatgtaatataccttgaagaccttcacagccaagattgaggccaatcacgcgaccagagatggtgt 396  Q
    || ||||||||||||| |||||||||||| || ||||||| | |||||||||| |||||||||||||||||||||||||||||| ||| || |||||| |    
T  42125538 tgaagatgaacaagattgaaaagggtactgttaggatgtagtttaccttgaaggccttcacagccaagattgaggccaatcacgtgacgagtgatggtat 42125637  T
Q  397 cgcacgtgacaccattccatgagcagcaatcagtcccatttttccatgtt 446  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42125638 cacacgtgacaccattccatgagcagcaatcagtcccatttttccatgtt 42125687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 134 - 452
Target Start/End: Complemental strand, 41712014 - 41711696
Alignment:
Q  134 agagagataaagtgattgtaatttggaaagatatgagatttgagttggaatttcaccataaaagttactataagacaagtaaagatgtgtaagactccga 233  Q
    |||||||| |||||||||||||||||| || | |||||||||| ||||||||||||| | ||||| ||||||||||| || |||||||| |||||||  |    
T  41712014 agagagatgaagtgattgtaatttggagaggtgtgagatttgaattggaatttcaccttcaaagtaactataagacatgtcaagatgtgcaagactcaaa 41711915  T
Q  234 aacccaccaaacttagaatgaaaatgagagccggagaaattattgtatacaaggttgagtgtttggagatgaacaagatggaaaagggtactattcggat 333  Q
    |||| ||||||||||||||||||||| |||   ||||||| ||||||   |||||||||||||||||||||||||||||||||||| ||| |||| ||||    
T  41711914 aaccgaccaaacttagaatgaaaatgggagtaagagaaatcattgtaagaaaggttgagtgtttggagatgaacaagatggaaaagagtattattaggat 41711815  T
Q  334 gtaatataccttgaagaccttcacagccaagattgaggccaatcacgcgaccagagatggtgtcgcacgtgacaccattccatgagcagcaatcagtccc 433  Q
    | |||||||||||||| || ||||||||||| |||||||||| |||||||||| ||| |||||| || ||||||||   ||||||||| ||||||||| |    
T  41711814 ggaatataccttgaaggccatcacagccaaggttgaggccaaccacgcgaccatagacggtgtcacatgtgacaccgggccatgagcaacaatcagtctc 41711715  T
Q  434 atttttccatgttattgtt 452  Q
    ||||||||||||| |||||    
T  41711714 atttttccatgttgttgtt 41711696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 56 - 446
Target Start/End: Complemental strand, 34239166 - 34238773
Alignment:
Q  56 caaaaacagctcttgtaaatctgttgcattttgcagcagtctgttcaaggtaatctctttcaaaactaactcatt---cccagagagataaagtgattgt 152  Q
    ||||||||||||   ||||  |||||| |||||||  ||||| || |||||  |||||||| ||||||||||||    |||||| |||| ||||||||||    
T  34239166 caaaaacagctcccttaaacttgttgcgttttgcacaagtctctttaaggtggtctctttccaaactaactcataatgcccagaaagatgaagtgattgt 34239067  T
Q  153 aatttggaaagatatgagatttgagttggaatttcaccataaaagttactataagacaagtaaagatgtgtaagactccgaaacccaccaaacttagaat 252  Q
    ||||||||||| |||||||||||||  |||||||||||   ||  | | ||| |||||||| ||||||||||||||||  |||||  |||||||||||||    
T  34239066 aatttggaaaggtatgagatttgagaaggaatttcaccgccaacatgagtattagacaagtcaagatgtgtaagactcgtaaacctgccaaacttagaat 34238967  T
Q  253 gaaaatgagagccggagaaattattgtatacaaggttgagtgtttggagatgaacaagatggaaaagggtactattcggatgtaatataccttgaagacc 352  Q
     |||||  || ||  |||||  |||||    |||||||||||||||||||||||||| || ||||||||||||||| ||||| | |||||||||||  ||    
T  34238966 caaaataggaaccatagaaaccattgttagaaaggttgagtgtttggagatgaacaatattgaaaagggtactattaggatggagtataccttgaaagcc 34238867  T
Q  353 ttcacagccaagattgaggccaatcacgcgaccagagatggtgtcgcacgtgacaccattccatgagcagcaatcagtcccatttttccatgtt 446  Q
    |||||| ||||| || |||||||| ||| ||||||| | |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34238866 ttcacaaccaaggttaaggccaatgacgtgaccagatacggtgtcacacgtgacaccatgccatgagcagcaatcagtcccatttttccatgtt 34238773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 56 - 446
Target Start/End: Complemental strand, 34231123 - 34230718
Alignment:
Q  56 caaaaacagctcttgtaaatctgttgcattttgcagcagtctgttcaaggtaatctctttcaaaactaact---cattcccagagagataaagtgattgt 152  Q
    ||||||||||||   ||||  |||||| |||||||  ||||| ||||||||| |||||||| |||||||||   |||||||||| |||| ||||||||||    
T  34231123 caaaaacagctcccttaaacttgttgcgttttgcacaagtctcttcaaggtagtctctttccaaactaacttatcattcccagaaagatgaagtgattgt 34231024  T
Q  153 aatttggaaagatatgagatttgagttggaatttcaccataaaagttactataagacaagtaaagatgtgtaagactccgaaacccaccaaacttagaat 252  Q
    ||||||||||| |  ||||||||||  ||||||||| | | ||||  || | |||||||||  |||||||||||||||  |||||| |||||||||||||    
T  34231023 aatttggaaaggtccgagatttgagaaggaatttcatcttgaaagaaacaagaagacaagtcgagatgtgtaagactcataaacccgccaaacttagaat 34230924  T
Q  253 gaaaatgagagccggagaaatt------------attgtatacaaggttgagtgtttggagatgaacaagatggaaaagggtactattcggatgtaatat 340  Q
    ||||||| ||||| |||||||             |||||    |||||||||  |||| || ||| |||||||||||||||||||||| ||||| | |||    
T  34230923 gaaaatgggagccagagaaatcgttagagaaataattgttcgaaaggttgagcatttgaaggtgagcaagatggaaaagggtactattaggatggagtat 34230824  T
Q  341 accttgaagaccttcacagccaagattgaggccaatcacgcgaccagagatggtgtcgcacgtgacaccattccatgagcagcaatcagtcccatttttc 440  Q
    ||||||||  |||||||||||||| || |||||||| ||| ||||||| | |||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  34230823 accttgaaagccttcacagccaaggttaaggccaatgacgtgaccagatacggtgtcacacgtgacaccatgccatgagcagcaatcagtcccatttttc 34230724  T
Q  441 catgtt 446  Q
    ||||||    
T  34230723 catgtt 34230718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 148 - 446
Target Start/End: Original strand, 42118787 - 42119089
Alignment:
Q  148 attgtaatttggaaagatatgagatttgagttggaatttcaccataaaagtta-ctataagacaagtaaagatgtgtaagactccgaaacccaccaaact 246  Q
    ||||||||||||| |  | |||||||||||||||||||||||| | ||||  | |||| |||||||| ||||||||||||||||  ||| ||||||||||    
T  42118787 attgtaatttggataagtgtgagatttgagttggaatttcacctttaaagaaaactatgagacaagtcaagatgtgtaagactcaaaaaaccaccaaact 42118886  T
Q  247 tagaatgaaaatgagagccggagaaattattgtatacaaggttgagtgtttggagatgaacaagatggaaaagggtactattcggatgtaatataccttg 346  Q
    ||||||||||| ||||  |||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||| | || ||||||||| ||||       
T  42118887 tagaatgaaaacgagaagcggagaaattattggatgcaaggtttagtgtttggagatgaacaagatggaaaagggtattgttaggatgtaatttaccagt 42118986  T
Q  347 aagaccttcacagccaagattgaggccaatcacgcgaccagagatggtgtcgcacgtgacaccattcc---atgagcagcaatcagtcccatttttccat 443  Q
    ||| | || | ||||||| ||||| ||||||||| |||||||||   || | |||| |||||||| ||   |||||||||||||||||||||||||||||    
T  42118987 aaggcgttaaaagccaaggttgagaccaatcacgtgaccagagactctgacacacgcgacaccatgccatgatgagcagcaatcagtcccatttttccat 42119086  T
Q  444 gtt 446  Q
    |||    
T  42119087 gtt 42119089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 160 - 446
Target Start/End: Complemental strand, 41570218 - 41569932
Alignment:
Q  160 aaagatatgagatttgagttggaatttcaccataaaagttactataagacaagtaaagatgtgtaagactccgaaacccaccaaacttagaatgaaaatg 259  Q
    |||| |||||||||||||  |||| ||| || | ||||||||   ||||||||| ||||||||||||||||  ||| |||||||||| |||||| ||||     
T  41570218 aaaggtatgagatttgaggaggaacttcgccttgaaagttacacgaagacaagtcaagatgtgtaagactcttaaatccaccaaactgagaatgcaaatt 41570119  T
Q  260 agagccggagaaattattgtatacaaggttgagtgtttggagatgaacaagatggaaaagggtactattcggatgtaatataccttgaagaccttcacag 359  Q
     |||  | |||||| |||||    ||||||||||| |||||||||| ||||||| ||||| ||  | || ||||  | | |||||||||| | |||||||    
T  41570118 ggagttgaagaaatcattgtgagaaaggttgagtgattggagatgagcaagatgaaaaagagtgttgttaggataaattttaccttgaaggcattcacag 41570019  T
Q  360 ccaagattgaggccaatcacgcgaccagagatggtgtcgcacgtgacaccattccatgagcagcaatcagtcccatttttccatgtt 446  Q
    ||||| | ||| |||||||||||||||||||  | ||||||||||||||||| |||||| || ||||  ||| || |||||||||||    
T  41570018 ccaaggtcgagaccaatcacgcgaccagagacagcgtcgcacgtgacaccatgccatgaacaacaatttgtctcaattttccatgtt 41569932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 513 - 583
Target Start/End: Original strand, 42125742 - 42125812
Alignment:
Q  513 ttgaactgaagcaaagcagagctctcatcgtgatggcatgaaaaattgaaagaagaagagaatgatggaaa 583  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||    
T  42125742 ttgaactgaagcaaagcagagctctcatcatgatgacatgaaaaattgaaagaagaagagaaggatggaaa 42125812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 502 - 571
Target Start/End: Original strand, 42130953 - 42131022
Alignment:
Q  502 tgaaggaggacttgaactgaagcaaagcagagctctcatcgtgatggcatgaaaaattgaaagaagaaga 571  Q
    ||||||| |||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||    
T  42130953 tgaaggatgacttgaactgaagcaaagcagagctgtcattatgatggcatgaaaaattgaaagaagaaga 42131022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 501 - 571
Target Start/End: Complemental strand, 41711653 - 41711583
Alignment:
Q  501 gtgaaggaggacttgaactgaagcaaagcagagctctcatcgtgatggcatgaaaaattgaaagaagaaga 571  Q
    ||||| || |||||||| |||||||| ||||| |||||||| ||||||||||| |||||||||||||||||    
T  41711653 gtgaatgatgacttgaattgaagcaatgcagaactctcatcatgatggcatgagaaattgaaagaagaaga 41711583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 501 - 547
Target Start/End: Complemental strand, 34230678 - 34230632
Alignment:
Q  501 gtgaaggaggacttgaactgaagcaaagcagagctctcatcgtgatg 547  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||    
T  34230678 gtgaaggaggacttgaactgaagcaaagcaaagctctcatcatgatg 34230632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 501 - 547
Target Start/End: Complemental strand, 34238733 - 34238687
Alignment:
Q  501 gtgaaggaggacttgaactgaagcaaagcagagctctcatcgtgatg 547  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||    
T  34238733 gtgaaggaggacttgaactgaagcaaagcaaagctctcatcatgatg 34238687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 501 - 546
Target Start/End: Original strand, 42119138 - 42119183
Alignment:
Q  501 gtgaaggaggacttgaactgaagcaaagcagagctctcatcgtgat 546  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||    
T  42119138 gtgaaggaggacttgaactgaagcagagcagagctctcatcatgat 42119183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 283 - 446
Target Start/End: Original strand, 41446145 - 41446308
Alignment:
Q  283 caaggttgagtgtttggagatgaacaagatggaaaagggtactattcggatgtaatataccttgaagaccttcacagccaagattgaggccaatcacgcg 382  Q
    |||||||||||||||||||||||  |||||| ||||| ||||| || ||||| |  |||||||||||  | |  ||||  || |  | |||||| ||| |    
T  41446145 caaggttgagtgtttggagatgagaaagatgaaaaagtgtactgttgggatgaataataccttgaaggtcattgcagctgaggtctaagccaattacgtg 41446244  T
Q  383 accagagatggtgtcgcacgtgacaccattccatgagcagcaatcagtcccatttttccatgtt 446  Q
    |||||| || ||||| || |||||||||  ||||||||| ||||| || ||||||| |||||||    
T  41446245 accagaaattgtgtcacaggtgacaccaagccatgagcaacaatctgtaccattttgccatgtt 41446308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 349
Target Start/End: Original strand, 41433421 - 41433487
Alignment:
Q  283 caaggttgagtgtttggagatgaacaagatggaaaagggtactattcggatgtaatataccttgaag 349  Q
    |||||||||||||||||||||||  |||||| ||||| ||||| || ||||| |  |||||||||||    
T  41433421 caaggttgagtgtttggagatgagaaagatgaaaaagtgtactgttgggatgaatcataccttgaag 41433487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 180; Significance: 7e-97; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 8 - 446
Target Start/End: Complemental strand, 25521385 - 25520938
Alignment:
Q  8 aagcaaaggaaaggagtttggtcttattgaagacatattagttctatacaaaaacagctcttgtaaatctgttgcattttgcagcagtctgttcaaggta 107  Q
    |||||||| || ||||||||||||||| ||||||||||| ||   || |||||||| ||| ||||||| ||||||||||||||  || || || ||| |     
T  25521385 aagcaaagcaatggagtttggtcttatagaagacatatttgtataatccaaaaacaactcctgtaaatttgttgcattttgcaaaagcctctttaagatg 25521286  T
Q  108 atctctttcaaaactaactcatt---------cccagagagataaagtgattgtaatttggaaagatatgagatttgagttggaatttcaccataaaagt 198  Q
     |||||||| |||||||  |||          |||||| |||| ||||||||||||||||||||| | |||||||||||||||||||| ||| | ||||     
T  25521285 gtctctttccaaactaaaacataaccaaaatacccagaaagatgaagtgattgtaatttggaaaggtgtgagatttgagttggaattttacctttaaaga 25521186  T
Q  199 tactataagacaagtaaagatgtgtaagactccgaaacccaccaaacttagaatgaaaatgagagccggagaaattattgtatacaaggttgagtgtttg 298  Q
     ||||  ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||| | ||||| ||||||   |||||||||| ||||    
T  25521185 aactaccagacaagtaaagatgtgtaagactctgaaacccaccaaacttagcatgaaaatgggagccagtgaaatcattgtaagaaaggttgagtttttg 25521086  T
Q  299 gagatgaacaagatggaaaagggtactattcggatgtaatataccttgaagaccttcacagccaagattgaggccaatcacgcgaccagagatggtgtcg 398  Q
     | |||| ||||||||||||| |||||||| ||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||| |  ||||||||    
T  25521085 aatatgagcaagatggaaaagagtactattaggatggaatataccttggaggccttcacagccaaggttgaggccaatcacgcgaccaaaagtggtgtcg 25520986  T
Q  399 cacgtgacaccattccatgagcagcaatcagtcccatttttccatgtt 446  Q
    || |||||||||| ||||||||||||||||||||||| ||||||||||    
T  25520985 catgtgacaccatgccatgagcagcaatcagtcccatatttccatgtt 25520938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 501 - 568
Target Start/End: Complemental strand, 25520886 - 25520819
Alignment:
Q  501 gtgaaggaggacttgaactgaagcaaagcagagctctcatcgtgatggcatgaaaaattgaaagaaga 568  Q
    ||||||||||| || |||||||||| |||||||||||||||  |||||||||||||||||||||||||    
T  25520886 gtgaaggaggatttaaactgaagcagagcagagctctcatcacgatggcatgaaaaattgaaagaaga 25520819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 160; Significance: 6e-85; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 131 - 446
Target Start/End: Original strand, 8524827 - 8525142
Alignment:
Q  131 cccagagagataaagtgattgtaatttggaaagatatgagatttgagttggaatttcaccataaaagttactataagacaagtaaagatgtgtaagactc 230  Q
    ||||||||||| |||||||||||||||| |||| | |||||||||||||||||||||||| | || || ||||| |||||||| ||||||||| ||||||    
T  8524827 cccagagagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaggtaactatgagacaagtcaagatgtgtgagactc 8524926  T
Q  231 cgaaacccaccaaacttagaatgaaaatgagagccggagaaattattgtatacaaggttgagtgtttggagatgaacaagatggaaaagggtactattcg 330  Q
      ||||||||||||||| |||||||||| |||||| ||||||| |||||   ||||||||||| |||| | || | ||||||||||||||||||| || |    
T  8524927 aaaaacccaccaaactttgaatgaaaataagagccagagaaatcattgttagcaaggttgagtttttgaatataagcaagatggaaaagggtactgttag 8525026  T
Q  331 gatgtaatataccttgaagaccttcacagccaagattgaggccaatcacgcgaccagagatggtgtcgcacgtgacaccattccatgagcagcaatcagt 430  Q
    |||  | ||| ||||||||||||||||||||||| ||||||||||||||| |||||  ||||||||| ||||||||||||| |||||||||||||||| |    
T  8525027 gattgagtatgccttgaagaccttcacagccaaggttgaggccaatcacgtgaccactgatggtgtcacacgtgacaccatcccatgagcagcaatcaat 8525126  T
Q  431 cccatttttccatgtt 446  Q
    | ||||||||||||||    
T  8525127 ctcatttttccatgtt 8525142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 501 - 583
Target Start/End: Original strand, 8525203 - 8525285
Alignment:
Q  501 gtgaaggaggacttgaactgaagcaaagcagagctctcatcgtgatggcatgaaaaattgaaagaagaagagaatgatggaaa 583  Q
    |||||||| |||||||| ||||||||||||||||||||||  |||||||| |||||||||||||||||||| || ||||||||    
T  8525203 gtgaaggatgacttgaaatgaagcaaagcagagctctcataatgatggcaagaaaaattgaaagaagaagaaaaggatggaaa 8525285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 3e-68; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 135 - 446
Target Start/End: Original strand, 12250197 - 12250508
Alignment:
Q  135 gagagataaagtgattgtaatttggaaagatatgagatttgagttggaatttcaccataaaagttactataagacaagtaaagatgtgtaagactccgaa 234  Q
    ||||||| |||||||| |||||||||||| | ||||||||||||||||| |||||| | ||||  ||||| |||||||| ||||||||||||| |    |    
T  12250197 gagagatgaagtgattctaatttggaaaggtgtgagatttgagttggaacttcacctttaaagaaactattagacaagtcaagatgtgtaagattaaaga 12250296  T
Q  235 acccaccaaacttagaatgaaaatgagagccggagaaattattgtatacaaggttgagtgtttggagatgaacaagatggaaaagggtactattcggatg 334  Q
    | ||||||||||||||||||||||| |||   ||||||| |||| |   |||||||||||||||||||||| |||||| ||||||||||||||| || ||    
T  12250297 atccaccaaacttagaatgaaaatgggagtttgagaaatcattggaagaaaggttgagtgtttggagatgagcaagatcgaaaagggtactattaggttg 12250396  T
Q  335 taatataccttgaagaccttcacagccaagattgaggccaatcacgcgaccagagatggtgtcgcacgtgacaccattccatgagcagcaatcagtccca 434  Q
    ||||||||| | ||| ||||||  |||||| | ||||||||||||  ||||| |||| ||||| || |||||||||| ||||||||||||||||||||||    
T  12250397 taatataccatcaaggccttcatcgccaaggtcgaggccaatcacatgaccatagattgtgtcacatgtgacaccatgccatgagcagcaatcagtccca 12250496  T
Q  435 tttttccatgtt 446  Q
    |||| |||||||    
T  12250497 ttttgccatgtt 12250508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 571
Target Start/End: Original strand, 12250522 - 12250573
Alignment:
Q  520 gaagcaaagcagagctctcatcgtgatggcatgaaaaattgaaagaagaaga 571  Q
    |||||| |||||||||||| || ||||| |||||||||||||||||| ||||    
T  12250522 gaagcagagcagagctctcgtcatgatgacatgaaaaattgaaagaataaga 12250573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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