View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12994_high_5 (Length: 490)

Name: NF12994_high_5
Description: NF12994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12994_high_5
NF12994_high_5
[»] chr6 (31 HSPs)
chr6 (18-479)||(4483225-4483692)
chr6 (336-460)||(4496084-4496214)
chr6 (145-293)||(12731559-12731709)
chr6 (369-440)||(4507178-4507249)
chr6 (184-284)||(6643329-6643429)
chr6 (212-307)||(4787770-4787865)
chr6 (186-302)||(11650916-11651033)
chr6 (238-293)||(10729942-10729997)
chr6 (252-289)||(28865483-28865520)
chr6 (226-266)||(4485691-4485731)
chr6 (441-477)||(4507110-4507146)
chr6 (212-302)||(479799-479888)
chr6 (134-196)||(4033094-4033158)
chr6 (259-323)||(4483343-4483405)
chr6 (188-307)||(5706647-5706767)
chr6 (145-233)||(1473599-1473689)
chr6 (134-182)||(4032958-4033008)
chr6 (327-362)||(4513662-4513697)
chr6 (327-362)||(4517750-4517785)
chr6 (327-362)||(4603520-4603555)
chr6 (136-299)||(12731529-12731694)
chr6 (252-307)||(17600698-17600753)
chr6 (253-307)||(4033086-4033140)
chr6 (327-361)||(4575866-4575900)
chr6 (327-361)||(4627561-4627595)
chr6 (253-307)||(17389991-17390045)
chr6 (184-262)||(31989170-31989248)
chr6 (145-219)||(479787-479863)
chr6 (238-307)||(1473606-1473675)
chr6 (137-182)||(24691922-24691967)
chr6 (259-295)||(24110066-24110102)
[»] chr4 (27 HSPs)
chr4 (145-307)||(21433864-21434028)
chr4 (147-283)||(1338419-1338555)
chr4 (135-307)||(15134541-15134715)
chr4 (184-302)||(2247576-2247693)
chr4 (149-307)||(21433861-21434021)
chr4 (160-273)||(33414002-33414117)
chr4 (137-293)||(9023886-9024044)
chr4 (148-307)||(32286221-32286379)
chr4 (148-298)||(52374904-52375056)
chr4 (184-299)||(16457945-16458059)
chr4 (216-302)||(7403140-7403226)
chr4 (238-299)||(33414002-33414063)
chr4 (212-307)||(3688623-3688719)
chr4 (166-291)||(19382302-19382424)
chr4 (149-289)||(31758677-31758817)
chr4 (184-242)||(45654067-45654125)
chr4 (237-307)||(52374908-52374978)
chr4 (145-205)||(7403176-7403238)
chr4 (231-302)||(41840589-41840660)
chr4 (171-233)||(993229-993291)
chr4 (237-302)||(1338429-1338492)
chr4 (149-182)||(2247568-2247601)
chr4 (212-245)||(2324811-2324844)
chr4 (252-309)||(16577344-16577401)
chr4 (148-204)||(34252008-34252065)
chr4 (237-302)||(34252017-34252081)
chr4 (147-180)||(42516565-42516598)
[»] chr8 (25 HSPs)
chr8 (145-293)||(8402485-8402631)
chr8 (160-298)||(34504377-34504517)
chr8 (146-293)||(2288584-2288733)
chr8 (212-302)||(27072868-27072958)
chr8 (210-307)||(17893308-17893405)
chr8 (210-299)||(35586454-35586543)
chr8 (145-307)||(40694604-40694768)
chr8 (159-307)||(20271006-20271161)
chr8 (159-307)||(21057634-21057789)
chr8 (138-219)||(27072894-27072977)
chr8 (161-299)||(34504377-34504517)
chr8 (145-307)||(40694597-40694761)
chr8 (160-298)||(40175893-40176034)
chr8 (136-278)||(42072637-42072779)
chr8 (184-307)||(40696213-40696336)
chr8 (238-307)||(40566535-40566604)
chr8 (327-362)||(1675931-1675966)
chr8 (145-196)||(4994257-4994308)
chr8 (136-182)||(20271131-20271177)
chr8 (136-182)||(21057759-21057805)
chr8 (212-278)||(38835053-38835119)
chr8 (166-287)||(42072671-42072792)
chr8 (210-290)||(3311582-3311662)
chr8 (441-477)||(20862697-20862733)
chr8 (185-245)||(26018513-26018573)
[»] chr3 (28 HSPs)
chr3 (145-307)||(36480698-36480862)
chr3 (135-298)||(40554015-40554177)
chr3 (184-277)||(13540201-13540294)
chr3 (184-289)||(35357326-35357431)
chr3 (134-307)||(36480680-36480855)
chr3 (210-302)||(14345147-14345239)
chr3 (238-301)||(3901572-3901635)
chr3 (136-278)||(1753291-1753435)
chr3 (145-298)||(29955022-29955177)
chr3 (145-298)||(30004176-30004331)
chr3 (224-298)||(799306-799380)
chr3 (158-289)||(3901508-3901635)
chr3 (184-285)||(31205394-31205495)
chr3 (210-298)||(19560680-19560768)
chr3 (144-245)||(36007408-36007511)
chr3 (226-307)||(35415036-35415117)
chr3 (210-307)||(37189195-37189292)
chr3 (210-295)||(51541248-51541333)
chr3 (144-180)||(26986276-26986312)
chr3 (149-298)||(32880985-32881136)
chr3 (213-285)||(45332557-45332629)
chr3 (136-196)||(14345126-14345188)
chr3 (210-293)||(40117777-40117860)
chr3 (136-194)||(1458515-1458573)
chr3 (184-278)||(11532455-11532549)
chr3 (149-226)||(16993339-16993416)
chr3 (238-307)||(31205360-31205429)
chr3 (238-298)||(11532514-11532574)
[»] chr1 (26 HSPs)
chr1 (184-307)||(34437623-34437745)
chr1 (184-302)||(2542698-2542816)
chr1 (184-278)||(40374057-40374150)
chr1 (210-299)||(31970119-31970208)
chr1 (216-293)||(40668986-40669063)
chr1 (145-298)||(34437598-34437752)
chr1 (136-299)||(7444256-7444421)
chr1 (144-289)||(38663634-38663781)
chr1 (138-220)||(21281454-21281539)
chr1 (209-299)||(49822578-49822668)
chr1 (134-293)||(40668934-40669093)
chr1 (184-307)||(939359-939482)
chr1 (238-302)||(21281473-21281538)
chr1 (238-307)||(38663642-38663711)
chr1 (211-278)||(39131583-39131650)
chr1 (160-301)||(31970119-31970262)
chr1 (213-265)||(39184184-39184236)
chr1 (145-293)||(45563050-45563200)
chr1 (145-180)||(5695662-5695697)
chr1 (210-276)||(23317960-23318026)
chr1 (212-245)||(731383-731416)
chr1 (212-245)||(18075217-18075250)
chr1 (252-301)||(31851952-31852001)
chr1 (145-219)||(49822607-49822683)
chr1 (136-180)||(7444401-7444445)
chr1 (210-298)||(45215378-45215466)
[»] chr2 (27 HSPs)
chr2 (145-268)||(42094233-42094357)
chr2 (210-302)||(15194531-15194623)
chr2 (136-298)||(25666798-25666962)
chr2 (136-307)||(1469730-1469891)
chr2 (210-298)||(42251214-42251302)
chr2 (210-293)||(33171650-33171733)
chr2 (184-291)||(37810153-37810260)
chr2 (215-307)||(35715029-35715121)
chr2 (145-278)||(3466407-3466542)
chr2 (210-284)||(17383774-17383848)
chr2 (161-299)||(42029342-42029482)
chr2 (238-307)||(42094282-42094350)
chr2 (134-298)||(16209375-16209541)
chr2 (212-299)||(12779501-12779587)
chr2 (210-293)||(33069172-33069255)
chr2 (134-293)||(37810119-37810280)
chr2 (139-289)||(33069145-33069297)
chr2 (211-285)||(44247590-44247664)
chr2 (211-295)||(4237253-4237337)
chr2 (136-180)||(6979116-6979160)
chr2 (184-299)||(9430162-9430277)
chr2 (251-302)||(41496055-41496106)
chr2 (145-196)||(15194519-15194572)
chr2 (229-302)||(2302055-2302126)
chr2 (238-307)||(25666877-25666946)
chr2 (213-242)||(36283538-36283567)
chr2 (166-299)||(45300366-45300501)
[»] chr5 (20 HSPs)
chr5 (184-299)||(3907655-3907768)
chr5 (136-273)||(3907631-3907768)
chr5 (210-290)||(42420068-42420148)
chr5 (210-309)||(25545209-25545306)
chr5 (184-302)||(41169415-41169533)
chr5 (147-277)||(36059228-36059360)
chr5 (210-302)||(33029490-33029582)
chr5 (184-243)||(3771221-3771280)
chr5 (136-288)||(27195262-27195415)
chr5 (184-299)||(4190084-4190201)
chr5 (145-293)||(25545204-25545352)
chr5 (136-289)||(33029469-33029624)
chr5 (184-275)||(4158102-4158193)
chr5 (252-302)||(17474866-17474916)
chr5 (136-182)||(35244938-35244984)
chr5 (160-246)||(32309649-32309737)
chr5 (233-289)||(7721397-7721453)
chr5 (216-292)||(22399776-22399852)
chr5 (263-307)||(35244924-35244968)
chr5 (149-245)||(38029531-38029626)
[»] chr7 (21 HSPs)
chr7 (188-299)||(2276276-2276387)
chr7 (145-293)||(12275743-12275893)
chr7 (160-293)||(49106911-49107045)
chr7 (145-293)||(40134393-40134539)
chr7 (238-299)||(49106984-49107045)
chr7 (145-293)||(26862918-26863068)
chr7 (145-299)||(5443529-5443684)
chr7 (214-291)||(10056630-10056707)
chr7 (184-307)||(3235550-3235673)
chr7 (211-269)||(42986261-42986319)
chr7 (145-299)||(5452574-5452729)
chr7 (247-302)||(31042391-31042446)
chr7 (224-302)||(40134452-40134527)
chr7 (134-293)||(2276254-2276411)
chr7 (237-298)||(7017164-7017225)
chr7 (237-298)||(7032522-7032583)
chr7 (238-299)||(12275817-12275878)
chr7 (238-307)||(26862992-26863061)
chr7 (166-251)||(18089749-18089836)
chr7 (259-307)||(22026089-22026137)
chr7 (145-173)||(31042430-31042458)
[»] scaffold0003 (2 HSPs)
scaffold0003 (145-275)||(136344-136476)
scaffold0003 (252-309)||(136414-136471)
[»] scaffold0199 (1 HSPs)
scaffold0199 (327-362)||(1168-1203)
[»] scaffold0137 (1 HSPs)
scaffold0137 (210-301)||(8232-8322)
[»] scaffold0015 (1 HSPs)
scaffold0015 (252-309)||(201050-201107)


Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 479
Target Start/End: Original strand, 4483225 - 4483692
Alignment:
Q  18 attttcggtctcagaagatattattagattgatgtgcaccagtgggactcaatcactacaacataatagaatgaaaacataataaaatggaaatatcatt 117  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4483225 attttcggtctccgaagatattattagattgatgagcaccagtgggactcaatcactacaacatagtagaatgaaaacataataaaatggaaatatcatt 4483324  T
Q  118 tttagaagtaatctagatgagaaatattagcaacacatattttaacatacacttttcaacacactgtttgattggttaagattaacattgaccccaccaa 217  Q
    |||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||| || ||||||||||||| ||||| |  |  ||||||||    
T  4483325 tttagaagtaatctagatgagaaatactagcaacatacattttaacatacacttttcaacactctctttgattggttaaaattaatacgggtcccaccaa 4483424  T
Q  218 atcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgtatcgcttgta 317  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||  |||||||| |||| | ||| |||    
T  4483425 atcatgtgggacccatataaatttggtgtgacctacgtgagttttaacggatcaaagagagcgtgttgaaaagtgcgtgttaaaatgtgtgttgctagta 4483524  T
Q  318 tttctcctaaatacactcacaaacgtttgctcaaatcaagaggtctagcta------gatggtgatattaatccagacttgcaatctcgtcgtgaatcga 411  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||    
T  4483525 tttctcctaaatacaatcacaaacgtttgctcaaatcaagaggtctagctagatggtgatggtgatattaatccagacttgcaatctcgtcgtgaatcga 4483624  T
Q  412 ttagaaagaaattcatttacacttttcgcaatctggtcttgtgcctcctgttacttgcttagtttcat 479  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4483625 ttagaaataaattcatttacacttttcgcaatctggtcttgtgcctcctgttacttgcttagtttcat 4483692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 336 - 460
Target Start/End: Complemental strand, 4496214 - 4496084
Alignment:
Q  336 acaaacgtttgctcaaatcaagaggtctagctagatggtgat------attaatccagacttgcaatctcgtcgtgaatcgattagaaagaaattcattt 429  Q
    ||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||   ||| ||||    
T  4496214 acaaacgtttgctcaaatcaagaggtctagctagatggtgatggtgatattaatccagacttgcaatctcgtcgtgaatcgattagaaatttatttattt 4496115  T
Q  430 acacttttcgcaatctggtcttgtgcctcct 460  Q
    || |||||||||||||| |||||||||||||    
T  4496114 acccttttcgcaatctgatcttgtgcctcct 4496084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 145 - 293
Target Start/End: Complemental strand, 12731709 - 12731559
Alignment:
Q  145 tagcaacacatattttaacatacacttttcaacacactgttt--gattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 242  Q
    |||||||||||||| ||||| ||| ||| ||||||||| |||  |||||||||| ||| |||| |   ||||||||||||||||| |||| |||||||||    
T  12731709 tagcaacacatattataacacacattttccaacacactctttttgattggttaaaatttacatagcttccaccaaatcatgtgggtcccaaataaatttg 12731610  T
Q  243 gtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 293  Q
     || | |  |||||| |||||||||||||||||||  ||||||| ||||||    
T  12731609 atgggtctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgt 12731559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 440
Target Start/End: Complemental strand, 4507249 - 4507178
Alignment:
Q  369 gatggtgatattaatccagacttgcaatctcgtcgtgaatcgattagaaagaaattcatttacacttttcgc 440  Q
    ||||||||| |||||||||||||| |||||  |||||||||||||||||||||||| |||||| ||||||||    
T  4507249 gatggtgatgttaatccagacttgaaatctattcgtgaatcgattagaaagaaatttatttacccttttcgc 4507178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 184 - 284
Target Start/End: Complemental strand, 6643429 - 6643329
Alignment:
Q  184 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgt 283  Q
    ||||||||||||| ||| | || |  |||||||||||||||||| |||||||||||||||||    |||||||| |||||||||||||| ||||| ||||    
T  6643429 tttgattggttaaaattcatataggtcccaccaaatcatgtgggtcccatataaatttggtggtcactatgtgaattttaaccaatcaatgagagtgtgt 6643330  T
Q  284 t 284  Q
    |    
T  6643329 t 6643329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 212 - 307
Target Start/End: Original strand, 4787770 - 4787865
Alignment:
Q  212 caccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
    |||||||||||||| |||||||||| |||| ||   ||  |||||||||||||||||||||||||||  |||| |||| |||||||||||| ||||    
T  4787770 caccaaatcatgtgagacccatatagatttagtagaactcatgtgagttttaaccaatcaaagagagactgttaaaaaatgtatgttaaaatgtgt 4787865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 302
Target Start/End: Original strand, 11650916 - 11651033
Alignment:
Q  186 tgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaa-ccaatcaaagagagcgtgtt 284  Q
    ||||||||||| ||| |||| || |||||||||| ||||||| ||||||||||||||||| | || |||| | |||||| |||||||||||||   ||||    
T  11650916 tgattggttaaaattcacatggatcccaccaaattatgtgggtcccatataaatttggtgggtcccatgtaaattttaagccaatcaaagagattatgtt 11651015  T
Q  285 gaaaagtgtatgttaaaa 302  Q
    ||||| ||  ||||||||    
T  11651016 gaaaaatgcgtgttaaaa 11651033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 293
Target Start/End: Original strand, 10729942 - 10729997
Alignment:
Q  238 atttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 293  Q
    |||||||| ||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  10729942 atttggtgcgacctatatgaattttaaccgatcaaagagagcgtgttgaaaagtgt 10729997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 289
Target Start/End: Original strand, 28865483 - 28865520
Alignment:
Q  252 atgtgagttttaaccaatcaaagagagcgtgttgaaaa 289  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28865483 atgtgagttttaaccaatcaaagagagcgtgttgaaaa 28865520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 4485691 - 4485731
Alignment:
Q  226 ggacccatataaatttggtgtgacctatgtgagttttaacc 266  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  4485691 ggacccatataaacttggtgtgacctatgtgagttttaacc 4485731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 477
Target Start/End: Complemental strand, 4507146 - 4507110
Alignment:
Q  441 aatctggtcttgtgcctcctgttacttgcttagtttc 477  Q
    |||||||||||||||||||||||||||||||||||||    
T  4507146 aatctggtcttgtgcctcctgttacttgcttagtttc 4507110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 302
Target Start/End: Complemental strand, 479888 - 479799
Alignment:
Q  212 caccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaa 302  Q
    |||||||||||||||| || |||||||||||||| || | |||||| ||||||||||||||| | || || ||||||| ||| | ||||||    
T  479888 caccaaatcatgtggggcc-atataaatttggtgggatcaatgtgaattttaaccaatcaaataaagtgttttgaaaaatgtttattaaaa 479799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 4033158 - 4033094
Alignment:
Q  134 atgagaaatattagcaacacatattttaacatacacttttcaacacac--tgtttgattggttaa 196  Q
    ||||||||||||| ||||||| ||||||||| ||||||||||| ||||  | |||||||||||||    
T  4033158 atgagaaatattaacaacacacattttaacacacacttttcaatacactatctttgattggttaa 4033094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 259 - 323
Target Start/End: Complemental strand, 4483405 - 4483343
Alignment:
Q  259 ttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgtatcgcttgtatttctc 323  Q
    ||||||||||||||||||||  |||||||||||||||||||||| || | | ||| |||||||||    
T  4483405 ttttaaccaatcaaagagag--tgttgaaaagtgtatgttaaaatgtatgttgctagtatttctc 4483343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 307
Target Start/End: Original strand, 5706647 - 5706767
Alignment:
Q  188 attggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttgg-tgtgacctatgtgagttttaaccaatcaaagagagcgtgttga 286  Q
    ||||||||| ||| | || || |||||||||||||||| | | ||||| ||||| | || | || |||| | |||||| ||||||||||||| |||||||    
T  5706647 attggttaaaattcatatggatcccaccaaatcatgtgcgtctcatatcaattttgatgggtcccatgtaaattttaatcaatcaaagagagtgtgttga 5706746  T
Q  287 aaagtgtatgttaaaacgtgt 307  Q
    ||||| | |||||||| ||||    
T  5706747 aaagtatgtgttaaaatgtgt 5706767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 233
Target Start/End: Original strand, 1473599 - 1473689
Alignment:
Q  145 tagcaacacatattttaacatacacttttcaacacac--tgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccat 233  Q
    |||||||||| ||||||| | ||| ||||||||||||  | ||||||||||||| ||| |||| |   ||||||||||||||||| |||||    
T  1473599 tagcaacacacattttaatacacatttttcaacacactatctttgattggttaaaattcacatgggttccaccaaatcatgtgggtcccat 1473689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 4032958 - 4033008
Alignment:
Q  134 atgagaaatattagcaacacatattttaacat--acacttttcaacacact 182  Q
    ||||||||| ||||||||||||||||||||||  ||| |||||||||||||    
T  4032958 atgagaaatgttagcaacacatattttaacataaacatttttcaacacact 4033008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 362
Target Start/End: Original strand, 4513662 - 4513697
Alignment:
Q  327 aatacactcacaaacgtttgctcaaatcaagaggtc 362  Q
    |||||| |||||||||||||||||||||||||||||    
T  4513662 aatacaatcacaaacgtttgctcaaatcaagaggtc 4513697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 362
Target Start/End: Complemental strand, 4517785 - 4517750
Alignment:
Q  327 aatacactcacaaacgtttgctcaaatcaagaggtc 362  Q
    |||||| |||||||||||||||||||||||||||||    
T  4517785 aatacaatcacaaacgtttgctcaaatcaagaggtc 4517750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 362
Target Start/End: Complemental strand, 4603555 - 4603520
Alignment:
Q  327 aatacactcacaaacgtttgctcaaatcaagaggtc 362  Q
    |||||| |||||||||||||||||||||||||||||    
T  4603555 aatacaatcacaaacgtttgctcaaatcaagaggtc 4603520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 299
Target Start/End: Original strand, 12731529 - 12731694
Alignment:
Q  136 gagaaatattagcaacacatattttaacatacacttttcaacaca--ctgtttgattggttaagattaacat-tgaccccaccaaatcatgtgggaccca 232  Q
    ||||||| ||||||||||||||| ||| | |||||| ||||||||  || ||||||||||||| ||| ||||  |||||  | || | || |||||||||    
T  12731529 gagaaatgttagcaacacatattctaatacacacttctcaacacattctctttgattggttaaaattcacatgagacccatcaaatttatttgggaccca 12731628  T
Q  233 tataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtta 299  Q
     ||  ||||||||  | |||||| | ||||||||||||||| |||| |||||| ||| ||| |||||    
T  12731629 cat-gatttggtggaagctatgtaaattttaaccaatcaaaaagagtgtgttggaaaatgtgtgtta 12731694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 307
Target Start/End: Original strand, 17600698 - 17600753
Alignment:
Q  252 atgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
    ||||||||||||||||||||||||||   ||||||||| ||| |||||||| ||||    
T  17600698 atgtgagttttaaccaatcaaagagaatatgttgaaaaatgtttgttaaaatgtgt 17600753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 4033086 - 4033140
Alignment:
Q  253 tgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
    ||||| ||||||||||||||||| || || ||||||||||| |||||||| ||||    
T  4033086 tgtgaattttaaccaatcaaagatagtgtattgaaaagtgtgtgttaaaatgtgt 4033140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 4575900 - 4575866
Alignment:
Q  327 aatacactcacaaacgtttgctcaaatcaagaggt 361  Q
    |||||| ||||||||||||||||||||||||||||    
T  4575900 aatacaatcacaaacgtttgctcaaatcaagaggt 4575866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 4627595 - 4627561
Alignment:
Q  327 aatacactcacaaacgtttgctcaaatcaagaggt 361  Q
    |||||| ||||||||||||||||||||||||||||    
T  4627595 aatacaatcacaaacgtttgctcaaatcaagaggt 4627561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 17389991 - 17390045
Alignment:
Q  253 tgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
    ||||| |||||||||||||||||||| |||||||||| ||  |||||||| ||||    
T  17389991 tgtgaattttaaccaatcaaagagagagtgttgaaaattgcgtgttaaaatgtgt 17390045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 31989248 - 31989170
Alignment:
Q  184 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagtttt 262  Q
    ||||||| ||||| ||  |||| || |||| ||||||||||||| || |||||||||| ||||||| ||||||| ||||    
T  31989248 tttgatttgttaaaatatacatggatcccaacaaatcatgtgggtccaatataaattttgtgtgacttatgtgaatttt 31989170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 479787 - 479863
Alignment:
Q  145 tagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaat 219  Q
    |||||||||| ||||||| | ||| ||||||| ||||| |  |||||||||||| ||| ||||||| ||||||||||    
T  479787 tagcaacacaaattttaataaacatttttcaaaacactttatttgattggttaaaattcacattgatcccaccaaat 479863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 1473675 - 1473606
Alignment:
Q  238 atttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
    ||||||||  ||| |||||| ||||||||||||||||| || |||||||||| ||| | |||||| ||||    
T  1473675 atttggtggaacccatgtgaattttaaccaatcaaagatagtgtgttgaaaaatgtgtattaaaatgtgt 1473606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 24691967 - 24691922
Alignment:
Q  137 agaaatattagcaacacatattttaacatacacttttcaacacact 182  Q
    |||||| ||||||||||| ||||||||| ||||||| |||||||||    
T  24691967 agaaatgttagcaacacacattttaacacacactttccaacacact 24691922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 24110102 - 24110066
Alignment:
Q  259 ttttaaccaatcaaagagagcgtgttgaaaagtgtat 295  Q
    |||||||||||||||||||| |||||||||| |||||    
T  24110102 ttttaaccaatcaaagagagtgtgttgaaaaatgtat 24110066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 7e-41; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 145 - 307
Target Start/End: Complemental strand, 21434028 - 21433864
Alignment:
Q  145 tagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 242  Q
    |||||||||| ||||||||||||||||||||||||||| |  |||||||||||| ||| |||| || |||||||||||||||||| | ||||||||||||    
T  21434028 tagcaacacacattttaacatacacttttcaacacactctcattgattggttaaaattcacatggatcccaccaaatcatgtgggtctcatataaatttg 21433929  T
Q  243 gtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
    ||| | |  |||||| |||||||||||||||||||| |||||||||| ||| |||||||| ||||    
T  21433928 gtgggtctcatgtgaattttaaccaatcaaagagagtgtgttgaaaaatgtgtgttaaaatgtgt 21433864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 147 - 283
Target Start/End: Original strand, 1338419 - 1338555
Alignment:
Q  147 gcaacacatattttaacatacacttttcaacacactgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgt 246  Q
    |||||||||||||||||| ||| |||||||||| || ||||||||||||| | | |||| || ||||||||||  | ||||||||||||||||||| ||     
T  1338419 gcaacacatattttaacacacatttttcaacactctctttgattggttaaaaatcacatggatcccaccaaattgtatgggacccatataaatttgatgg 1338518  T
Q  247 gacctatgtgagttttaaccaatcaaagagagcgtgt 283  Q
     |||||||||| | |||||||||||||||||| ||||    
T  1338519 aacctatgtgaatcttaaccaatcaaagagagtgtgt 1338555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 135 - 307
Target Start/End: Original strand, 15134541 - 15134715
Alignment:
Q  135 tgagaaatattagcaacacatattttaacatacacttttcaacaca--ctgtttgattggttaagattaacattgaccccaccaaatcatgtgggaccca 232  Q
    ||||||||  ||| |||||| ||||||||| ||| |||||||||||  || ||| ||||||||| ||| |||| |  || || ||||||| |||| ||||    
T  15134541 tgagaaatgctagtaacacaaattttaacacacatttttcaacacattctcttttattggttaaaattcacatgggtccgactaaatcatttgggtccca 15134640  T
Q  233 tataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
    ||||||||||||| | || |||||| ||||||||||||| ||| || ||||||||||||||  ||||||| ||||    
T  15134641 tataaatttggtgagtcccatgtgaattttaaccaatcacagacagtgtgttgaaaagtgtgcgttaaaatgtgt 15134715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 184 - 302
Target Start/End: Complemental strand, 2247693 - 2247576
Alignment:
Q  184 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacct-atgtgagttttaaccaatcaaagagagcgtg 282  Q
    ||||||||||||| |||||||| || |||||||||||||||||| | ||||||||||| ||| || ||  ||||| |||||| |||| |||||||| |||    
T  2247693 tttgattggttaaaattaacatggatcccaccaaatcatgtgggtcgcatataaattt-gtg-gatctcgtgtgaattttaatcaattaaagagagtgtg 2247596  T
Q  283 ttgaaaagtgtatgttaaaa 302  Q
    ||||||||||| ||||||||    
T  2247595 ttgaaaagtgtgtgttaaaa 2247576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 149 - 307
Target Start/End: Original strand, 21433861 - 21434021
Alignment:
Q  149 aacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatc-atgtgggacccatataaatttggtg 245  Q
    |||||| ||||||||| ||| ||||||||||||| |  |||||||||||| ||| ||||    ||||||||||  || || |||||| || | |||||||    
T  21433861 aacacacattttaacacacatttttcaacacactctctttgattggttaaaattcacatgagacccaccaaatttatatgagacccacatga-tttggtg 21433959  T
Q  246 tgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
     || | |||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  21433960 ggatccatgtgaattttaaccaatcaatgagagtgtgttgaaaagtgtatgttaaaatgtgt 21434021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 160 - 273
Target Start/End: Original strand, 33414002 - 33414117
Alignment:
Q  160 taacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtga 257  Q
    ||||| ||||||||||||||||| |  |||||||||||| ||| |||| || |||||||||||| ||||| || |||||||||||||| | || || |||    
T  33414002 taacacacacttttcaacacactctctttgattggttaaaattcacatggatcccaccaaatcacgtgggtcctatataaatttggtgggtcccatatga 33414101  T
Q  258 gttttaaccaatcaaa 273  Q
     |||||| ||||||||    
T  33414102 attttaatcaatcaaa 33414117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 137 - 293
Target Start/End: Original strand, 9023886 - 9024044
Alignment:
Q  137 agaaatattagcaacacatattttaacatacacttttcaacacac--tgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccata 234  Q
    |||||| ||| ||| ||| |||||||||||||||||| |||||||  | ||||||||| ||| ||| ||||    |||| ||||||||||| | ||||||    
T  9023886 agaaatgttaacaatacacattttaacatacactttttaacacacgttttttgattgggtaaaattcacatgagtcccaacaaatcatgtgagtcccata 9023985  T
Q  235 taaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 293  Q
    ||||||  ||| | || |||| | ||||||| |||||||||||  ||||||||||||||    
T  9023986 taaattgagtgggtcccatgtaaattttaacaaatcaaagagaatgtgttgaaaagtgt 9024044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 148 - 307
Target Start/End: Original strand, 32286221 - 32286379
Alignment:
Q  148 caacacatattttaacatacacttttcaacacactgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtg 247  Q
    ||||| ||||||||| ||||| |||||||||| ||  ||||||  |||| ||| ||||    ||||||||||||||||| | | |||||||||||||  |    
T  32286221 caacaaatattttaagatacatttttcaacactcttattgattctttaaaattcacatgagtcccaccaaatcatgtgg-atcaatataaatttggttgg 32286319  T
Q  248 acctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
    | | |||||| ||||||||||| ||| |||| |||||||||| | |||||| ||||||||    
T  32286320 atccatgtgaattttaaccaataaaaaagagtgtgttgaaaaatatatgttgaaacgtgt 32286379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 148 - 298
Target Start/End: Original strand, 52374904 - 52375056
Alignment:
Q  148 caacacatattttaacatacacttttcaacaca--ctgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtg 245  Q
    ||||||| ||||||||| |||||||||||||||  || |||||| | |||| ||| |||| || | |||||||| ||||||| ||| |||||||||| ||    
T  52374904 caacacacattttaacacacacttttcaacacactctctttgatagattaaaattcacatggatctcaccaaattatgtgggtcccgtataaatttgatg 52375003  T
Q  246 tgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 298  Q
       |  |||||| ||||||||||||||| |||| || ||||||| ||| ||||    
T  52375004 gatcaaatgtgaattttaaccaatcaaaaagagtgtattgaaaaatgtgtgtt 52375056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 299
Target Start/End: Original strand, 16457945 - 16458059
Alignment:
Q  184 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgt 283  Q
    ||||||||||||| ||| |||| || |||| ||||||||||||| ||||||||||||||||| | |  |  |||  ||||| | ||||||||||| ||||    
T  16457945 tttgattggttaaaattcacatggatcccatcaaatcatgtgggtcccatataaatttggtgggtctcacatga-atttaatcgatcaaagagagtgtgt 16458043  T
Q  284 tgaaaagtgtatgtta 299  Q
    |||||||||| |||||    
T  16458044 tgaaaagtgtgtgtta 16458059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 216 - 302
Target Start/End: Original strand, 7403140 - 7403226
Alignment:
Q  216 aaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaa 302  Q
    |||||||||||||| | |||||||||  || ||   |||||| |||||||||||||||||||| |||||||| ||||| ||||||||    
T  7403140 aaatcatgtgggactcgtataaatttcatgggaatcatgtgaattttaaccaatcaaagagagtgtgttgaatagtgtgtgttaaaa 7403226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 33414063 - 33414002
Alignment:
Q  238 atttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtta 299  Q
    |||||||| || | |||||| |||||||||||||||||||| |||||||||||||| |||||    
T  33414063 atttggtgggatccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgtta 33414002  T

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Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 307
Target Start/End: Original strand, 3688623 - 3688719
Alignment:
Q  212 caccaaatcatgtgggacccatataaatttgg-tgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
    |||||||||||||||| ||||||||| ||| | || | |  |||||| ||||||||||||||||| || |||||| ||||||||| |||||| ||||    
T  3688623 caccaaatcatgtgggtcccatataattttagatgggtcacatgtgaattttaaccaatcaaagaaagtgtgttggaaagtgtatattaaaatgtgt 3688719  T

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Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 291
Target Start/End: Original strand, 19382302 - 19382424
Alignment:
Q  166 acacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagtttta 263  Q
    ||||||| ||||||||| |  |||||||||||| ||| |||| || ||||||||||||||||||     ||||||||||| | |||| || | | |||||    
T  19382302 acactttccaacacactctatttgattggttaaaattcacatggatcccaccaaatcatgtggg-----tataaatttggcgggacccatataaatttta 19382396  T
Q  264 accaatcaaagagagcgtgttgaaaagt 291  Q
    |||||||||| |||| ||||| ||||||    
T  19382397 accaatcaaaaagagtgtgttaaaaagt 19382424  T

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Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 289
Target Start/End: Original strand, 31758677 - 31758817
Alignment:
Q  149 aacacatattttaacatacacttttcaacaca--ctgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgt 246  Q
    |||||| |||||||||  ||||||||||||||  || ||||||||||||| ||| ||||   | ||||||||||||||||| | ||| |||||||||||     
T  31758677 aacacacattttaaca--cacttttcaacacattctatttgattggttaaaattcacataagctccaccaaatcatgtgggtctcatgtaaatttggtgg 31758774  T
Q  247 gacctatgtgagttttaaccaatcaaagagagcgtgttgaaaa 289  Q
    | |  ||  || |||||| ||||||||||||  ||||||||||    
T  31758775 gtctcataagaattttaatcaatcaaagagaatgtgttgaaaa 31758817  T

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Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 45654125 - 45654067
Alignment:
Q  184 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 242  Q
    ||||||||||||| ||| |||| || |||| ||||||||||||| ||||||||||||||    
T  45654125 tttgattggttaaaattcacatggatcccatcaaatcatgtgggtcccatataaatttg 45654067  T

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Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 307
Target Start/End: Complemental strand, 52374978 - 52374908
Alignment:
Q  237 aatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
    ||||||||| || | |||||| |||||| | ||||||||||| |||||||||||||| |||||||| ||||    
T  52374978 aatttggtgagatccatgtgaattttaatctatcaaagagagtgtgttgaaaagtgtgtgttaaaatgtgt 52374908  T

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Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 7403238 - 7403176
Alignment:
Q  145 tagcaacacatattttaacatacacttttcaacaca--ctgtttgattggttaagattaacat 205  Q
    |||||||||||||||||||| ||||| |||||||||  || ||||||||||||| ||| ||||    
T  7403238 tagcaacacatattttaacacacactattcaacacactctctttgattggttaaaattcacat 7403176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 302
Target Start/End: Complemental strand, 41840660 - 41840589
Alignment:
Q  231 catataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaa 302  Q
    |||||||||||||||  ||| |||| | |||||| ||||||||||||| |||||||||| | | ||||||||    
T  41840660 catataaatttggtggaacccatgtaaattttaatcaatcaaagagagtgtgttgaaaaatatgtgttaaaa 41840589  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 993229 - 993291
Alignment:
Q  171 tttcaacacactgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccat 233  Q
    |||||||||||| ||||||||||||| ||| ||||    |||||||||||||||||| |||||    
T  993229 tttcaacacactctttgattggttaaaattcacatgagtcccaccaaatcatgtgggtcccat 993291  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 1338492 - 1338429
Alignment:
Q  237 aatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaa 302  Q
    ||||||||| || | |||||| |||||||||||||||||||  |||||||||| ||| ||||||||    
T  1338492 aatttggtgggatccatgtgatttttaaccaatcaaagaga--gtgttgaaaaatgtgtgttaaaa 1338429  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 2247568 - 2247601
Alignment:
Q  149 aacacatattttaacatacacttttcaacacact 182  Q
    |||||||||||||||| |||||||||||||||||    
T  2247568 aacacatattttaacacacacttttcaacacact 2247601  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 2324811 - 2324844
Alignment:
Q  212 caccaaatcatgtgggacccatataaatttggtg 245  Q
    |||||||||||||||| |||||||||||||||||    
T  2324811 caccaaatcatgtgggtcccatataaatttggtg 2324844  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 309
Target Start/End: Original strand, 16577344 - 16577401
Alignment:
Q  252 atgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgtat 309  Q
    |||||||||||||||||||||| |||   | || ||||||||||||||||| ||||||    
T  16577344 atgtgagttttaaccaatcaaatagaatatattaaaaagtgtatgttaaaatgtgtat 16577401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 34252008 - 34252065
Alignment:
Q  148 caacacatattttaacatacacttttcaacacact-gtttgattggttaagattaaca 204  Q
    ||||||||||||||||||||||||||||| || ||  ||| ||||||||| |||||||    
T  34252008 caacacatattttaacatacacttttcaaaacgctcttttaattggttaaaattaaca 34252065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 34252081 - 34252017
Alignment:
Q  237 aatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaa 302  Q
    ||||||||| ||| | ||| | ||||||||||| ||| ||||||| ||||||||||||||||||||    
T  34252081 aatttggtgggacttgtgttaattttaaccaattaaa-agagcgttttgaaaagtgtatgttaaaa 34252017  T

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Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 180
Target Start/End: Complemental strand, 42516598 - 42516565
Alignment:
Q  147 gcaacacatattttaacatacacttttcaacaca 180  Q
    |||||||||||||||||| |||||||||||||||    
T  42516598 gcaacacatattttaacacacacttttcaacaca 42516565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 145 - 293
Target Start/End: Complemental strand, 8402631 - 8402485
Alignment:
Q  145 tagcaacacatattttaacatacacttttcaacacactgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggt 244  Q
    |||||||||| ||||||||| ||||||||||||||||| ||||||||||||| | |  ||| | ||||||||||||||||||||||||||| |||||| |    
T  8402631 tagcaacacacattttaacacacacttttcaacacactatttgattggttaaaactctcatgggccccaccaaatcatgtgggacccatattaatttgtt 8402532  T
Q  245 gtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 293  Q
    | |||| |||||| |||||| |||||||  |||| ||||||||||||||    
T  8402531 gggacccatgtgaattttaaacaatcaa--agagtgtgttgaaaagtgt 8402485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 160 - 298
Target Start/End: Complemental strand, 34504517 - 34504377
Alignment:
Q  160 taacatacacttttcaacacactgttt--gattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtga 257  Q
    ||||||||||||||||||||||| |||  |||||||||| |||  ||| |  | |||||||||||||||| ||||||||||||||||| |  | ||||||    
T  34504517 taacatacacttttcaacacactttttttgattggttaaaattcgcatgggtcacaccaaatcatgtgggtcccatataaatttggtgagttccatgtga 34504418  T
Q  258 gttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 298  Q
     ||||||||||||||| |||| |||||||||| | ||||||    
T  34504417 attttaaccaatcaaaaagagtgtgttgaaaaatatatgtt 34504377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 146 - 293
Target Start/End: Original strand, 2288584 - 2288733
Alignment:
Q  146 agcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttgg 243  Q
    ||||||||||||| ||||| |||||||  |||||||| |  |||||||||||| ||| |||| |    ||||||||||  |||| ||||||||||||||     
T  2288584 agcaacacatattctaacacacactttcgaacacactctctttgattggttaaaatttacatgggtttcaccaaatcacatgggtcccatataaatttga 2288683  T
Q  244 tgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 293  Q
    ||   || |||||| ||||||||||||||||||||  |||||||||||||    
T  2288684 tggatcccatgtgaattttaaccaatcaaagagagattgttgaaaagtgt 2288733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 302
Target Start/End: Original strand, 27072868 - 27072958
Alignment:
Q  212 caccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaa 302  Q
    |||||||||||||||  ||||||||||||||||| | || |||| | ||||||||||||||| |||  |||||||||||||| ||||||||    
T  27072868 caccaaatcatgtggatcccatataaatttggtgggtccaatgtaaattttaaccaatcaaaaagaatgtgttgaaaagtgtgtgttaaaa 27072958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 17893405 - 17893308
Alignment:
Q  210 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
    |||||||||||||||| |||||||||| |||| |||  ||  |||||||||||||| ||||||||||||  |||| |||| |||||||||||| ||||    
T  17893405 cccaccaaatcatgtgagacccatatagatttagtggaactcatgtgagttttaactaatcaaagagagtctgttaaaaaatgtatgttaaaatgtgt 17893308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 210 - 299
Target Start/End: Original strand, 35586454 - 35586543
Alignment:
Q  210 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtta 299  Q
    |||||||||||||||| | | ||||||||||||||| | ||||||||| |||||| |||| |||||||  |||||||||||||| |||||    
T  35586454 cccaccaaatcatgtgagtctcatataaatttggtgggtcctatgtgaattttaatcaattaaagagaatgtgttgaaaagtgtgtgtta 35586543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 145 - 307
Target Start/End: Complemental strand, 40694768 - 40694604
Alignment:
Q  145 tagcaacacatattttaacatacacttttcaacacactgtttg--attggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 242  Q
    ||||||||||  |||||||| ||||||||||| ||||| |||   ||| ||||| ||| |||| |  |||||||||||||||||| || ||||| |||||    
T  40694768 tagcaacacacgttttaacacacacttttcaatacactcttttttattagttaaaattcacatgggtcccaccaaatcatgtgggtcctatatagatttg 40694669  T
Q  243 gtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
    ||| | |  |||| | ||||||||||||||| |||  |||||| ||| ||| |||||||||||||    
T  40694668 gtgggtcgcatgttaattttaaccaatcaaatagattgtgttgtaaaatgtgtgttaaaacgtgt 40694604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 307
Target Start/End: Original strand, 20271006 - 20271161
Alignment:
Q  159 ttaacatacacttttcaacacactgtttgattggttaaga--ttaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacc-----t 251  Q
    |||||| ||| |||||||||| || ||||||||||||| |  || |||| || |||||||||||||||||| |||||||||||||  || | ||          
T  20271006 ttaacacacatttttcaacactctctttgattggttaaaaaattcacatggatcccaccaaatcatgtgggtcccatataaattttatgggtcccaaatc 20271105  T
Q  252 atgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
    |||||| ||||||| |||||||||||| |||||||||||||  |||||||| ||||    
T  20271106 atgtgaattttaactaatcaaagagagtgtgttgaaaagtgcgtgttaaaatgtgt 20271161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 307
Target Start/End: Original strand, 21057634 - 21057789
Alignment:
Q  159 ttaacatacacttttcaacacactgtttgattggttaaga--ttaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacc-----t 251  Q
    |||||| ||| |||||||||| || ||||||||||||| |  || |||| || |||||||||||||||||| |||||||||||||  || | ||          
T  21057634 ttaacacacatttttcaacactctctttgattggttaaaaaattcacatggatcccaccaaatcatgtgggtcccatataaattttatgggtcccaaatc 21057733  T
Q  252 atgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
    |||||| ||||||| |||||||||||| |||||||||||||  |||||||| ||||    
T  21057734 atgtgaattttaactaatcaaagagagtgtgttgaaaagtgcgtgttaaaatgtgt 21057789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 27072977 - 27072894
Alignment:
Q  138 gaaatattagcaacacatattttaacatacacttttcaacaca--ctgtttgattggttaagattaacattgaccccaccaaat 219  Q
    |||||| |||||||||||||||||||| |||||||||||||||  || ||||||||||||| ||| ||||||  ||||||||||    
T  27072977 gaaatactagcaacacatattttaacacacacttttcaacacattctttttgattggttaaaatttacattggacccaccaaat 27072894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 299
Target Start/End: Original strand, 34504377 - 34504517
Alignment:
Q  161 aacatacacttttcaacacactgttt--gattggttaagattaacattgaccccaccaaatc-atgtgggacccatataaatttggtgtgacctatgtga 257  Q
    |||||| | ||||||||||||| |||  |||||||||| ||| |||| || | ||||||||  || ||||||||| || | |||||||||||| ||| ||    
T  34504377 aacatatatttttcaacacactctttttgattggttaaaattcacatggaactcaccaaatttatatgggacccacatga-tttggtgtgacccatgcga 34504475  T
Q  258 gttttaaccaatcaaagagagcgtgttgaaaagtgtatgtta 299  Q
     ||||||||||||||| | || ||||||||||||||||||||    
T  34504476 attttaaccaatcaaaaaaagtgtgttgaaaagtgtatgtta 34504517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 145 - 307
Target Start/End: Original strand, 40694597 - 40694761
Alignment:
Q  145 tagcaacacatattttaacatacacttttcaacaca--ctgtttgattggttaagattaacattgaccccaccaaatc-atgtgggacccatataaattt 241  Q
    ||||||||||  |||||||| ||| ||| |||||||  || ||||||||||||| ||||||||    ||||||||||| || | ||||||| || | |||    
T  40694597 tagcaacacacgttttaacacacattttacaacacaatctatttgattggttaaaattaacatgcgacccaccaaatctatataggacccacatga-ttt 40694695  T
Q  242 ggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
    |||| |||| |||||| ||||||| ||| ||| |||| || ||||||||||| |||||||||||||    
T  40694696 ggtgggacccatgtgaattttaactaataaaaaagagtgtattgaaaagtgtgtgttaaaacgtgt 40694761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 160 - 298
Target Start/End: Complemental strand, 40176034 - 40175893
Alignment:
Q  160 taacatacacttttcaacacactg--tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtga 257  Q
    ||||| |||||||| ||||||||   ||| ||||||||| ||| |||| |  |||||||||| ||||||| |||||||||||||||||   || ||||||    
T  40176034 taacacacactttttaacacactccttttaattggttaaaattcacatgggtcccaccaaattatgtgggtcccatataaatttggtggatcccatgtga 40175935  T
Q  258 gttttaaccaat-caaagagagcgtgttgaaaagtgtatgtt 298  Q
     |||||||||||  ||| | || |||||||||||||| ||||    
T  40175934 attttaaccaataaaaaaaaagtgtgttgaaaagtgtgtgtt 40175893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 136 - 278
Target Start/End: Original strand, 42072637 - 42072779
Alignment:
Q  136 gagaaatattagcaacacatattttaacatacacttttcaacacactgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatat 235  Q
    |||||||  ||||||| || ||||||||| ||||||    |||| || ||||||||||||| ||| |||| |  ||||||||||||| |||| | |||||    
T  42072637 gagaaatgctagcaacgcacattttaacacacacttcaacacactctctttgattggttaacattcacatgggtcccaccaaatcatatgggtctcatat 42072736  T
Q  236 aaatttggtgtgacctatgtgagttttaaccaatcaaagagag 278  Q
    |||||||||| | || |||| | ||||||||||| ||| ||||    
T  42072737 aaatttggtgggtcccatgtaaattttaaccaataaaaaagag 42072779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 184 - 307
Target Start/End: Original strand, 40696213 - 40696336
Alignment:
Q  184 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgt 283  Q
    ||||||| ||||| ||| |||| |  ||||||||||||||||||  | ||||| |||||||| | |  |||| | ||||||||||| |||||||  ||||    
T  40696213 tttgattagttaaaattcacatgggtcccaccaaatcatgtgggttctatatagatttggtgggtcgcatgttaattttaaccaatgaaagagattgtgt 40696312  T
Q  284 tgaaaagtgtatgttaaaacgtgt 307  Q
    || ||| ||| |||||||||||||    
T  40696313 tgcaaaatgtgtgttaaaacgtgt 40696336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 40566535 - 40566604
Alignment:
Q  238 atttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
    |||||||| |||  |||||| ||||||||||||||| ||||||||||||||| | | |||||||| ||||    
T  40566535 atttggtgagactcatgtgaattttaaccaatcaaaaagagcgtgttgaaaaatatgtgttaaaatgtgt 40566604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 362
Target Start/End: Complemental strand, 1675966 - 1675931
Alignment:
Q  327 aatacactcacaaacgtttgctcaaatcaagaggtc 362  Q
    |||||| |||||||||||||||||||||||||||||    
T  1675966 aatacaatcacaaacgtttgctcaaatcaagaggtc 1675931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 4994308 - 4994257
Alignment:
Q  145 tagcaacacatattttaacatacacttttcaacacactgtttgattggttaa 196  Q
    |||||||||| ||||||||| ||| |||| |||||||| |||||||||||||    
T  4994308 tagcaacacacattttaacacacaatttttaacacactctttgattggttaa 4994257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 20271177 - 20271131
Alignment:
Q  136 gagaaatattagcaacacatattttaacatacacttttcaacacact 182  Q
    ||||||| ||||||||||| |||||||||  ||||||||||||||||    
T  20271177 gagaaatgttagcaacacacattttaacacgcacttttcaacacact 20271131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 21057805 - 21057759
Alignment:
Q  136 gagaaatattagcaacacatattttaacatacacttttcaacacact 182  Q
    ||||||| ||||||||||| |||||||||  ||||||||||||||||    
T  21057805 gagaaatgttagcaacacacattttaacacgcacttttcaacacact 21057759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 278
Target Start/End: Original strand, 38835053 - 38835119
Alignment:
Q  212 caccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagag 278  Q
    |||||||||||| ||| ||||||||||||||||     |||||||| ||||||||||||||| ||||    
T  38835053 caccaaatcatgcgggtcccatataaatttggtagattctatgtgaattttaaccaatcaaaaagag 38835119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 287
Target Start/End: Complemental strand, 42072792 - 42072671
Alignment:
Q  166 acacttttcaacacactgtttgattggttaagattaacattgaccccaccaaatc-atgtgggacccatataaatttggtgtgacctatgtgagttttaa 264  Q
    |||| ||| ||||| || ||| ||||||||| ||| |||| |  ||||||||||  || || ||||||||| | ||||||| |||| |||||| | ||||    
T  42072792 acacattttaacactcttttttattggttaaaatttacatgggacccaccaaatttatatgagacccatatga-tttggtgggacccatgtgaatgttaa 42072694  T
Q  265 ccaatcaaagagagcgtgttgaa 287  Q
    |||||||||||||| ||||||||    
T  42072693 ccaatcaaagagagtgtgttgaa 42072671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 290
Target Start/End: Original strand, 3311582 - 3311662
Alignment:
Q  210 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaag 290  Q
    ||||| |||| |||||| |||||||| ||||| |||  ||  |||||| |||||||| ||||||||||| | |||||||||    
T  3311582 cccactaaattatgtggaacccatatcaatttagtggaactgatgtgatttttaaccgatcaaagagagtgcgttgaaaag 3311662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 477
Target Start/End: Original strand, 20862697 - 20862733
Alignment:
Q  441 aatctggtcttgtgcctcctgttacttgcttagtttc 477  Q
    ||||||||||| | |||||||||||||||||||||||    
T  20862697 aatctggtcttatacctcctgttacttgcttagtttc 20862733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 26018573 - 26018513
Alignment:
Q  185 ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtg 245  Q
    |||||||||||| ||| |||| |  |||| ||||| ||||||| |||||||||||||||||    
T  26018573 ttgattggttaaaattcacatgggtcccatcaaattatgtgggtcccatataaatttggtg 26018513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 145 - 307
Target Start/End: Complemental strand, 36480862 - 36480698
Alignment:
Q  145 tagcaacacatattttaacatacacttttcaaca--cactgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 242  Q
    |||||||||| ||||||||| |||||||||||||  | || ||||||||| ||| ||| |||| |  |||||||||||||||||| ||||||||||||||    
T  36480862 tagcaacacacattttaacacacacttttcaacattctctctttgattggctaaaattcacatgggtcccaccaaatcatgtgggtcccatataaatttg 36480763  T
Q  243 gtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
     || | || |||||| |||||||||||||||||||| |||||| |||| || |||||||| ||||    
T  36480762 ttgggtcccatgtgaattttaaccaatcaaagagagtgtgttggaaagggtgtgttaaaatgtgt 36480698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 135 - 298
Target Start/End: Original strand, 40554015 - 40554177
Alignment:
Q  135 tgagaaatattagcaacacatattttaacatacacttttcaacacactgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccata 234  Q
    ||||||||| |||||||||| ||||||||| ||  |||| || || || ||  |||| |||| ||| |||| |  |||||||||||||||| ||||||||    
T  40554015 tgagaaatactagcaacacacattttaacacact-ttttaaaaactctcttcaattgattaaaattcacatgggtcccaccaaatcatgtgagacccata 40554113  T
Q  235 taaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 298  Q
    |||||||| ||  ||  ||||||||||||||||||||||||||| || ||||||| ||| ||||    
T  40554114 taaatttgatggaactcatgtgagttttaaccaatcaaagagagtgtattgaaaattgtgtgtt 40554177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 184 - 277
Target Start/End: Original strand, 13540201 - 13540294
Alignment:
Q  184 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagaga 277  Q
    ||||||||||| | | |||||| |  |||||||||||||||| |||| |||||||||||||| ||||||| ||| |||||||||||||||||||    
T  13540201 tttgattggtttaaactaacatggctcccaccaaatcatgtgagacctatataaatttggtgggacctatatgaattttaaccaatcaaagaga 13540294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 184 - 289
Target Start/End: Complemental strand, 35357431 - 35357326
Alignment:
Q  184 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgt 283  Q
    ||||||||||||| ||| |||| |  || ||||||||||||  | |||||||||||||||||   |  ||||||||||||||||||||||||||| ||||    
T  35357431 tttgattggttaaaattcacatgggtcctaccaaatcatgtaagtcccatataaatttggtggttcacatgtgagttttaaccaatcaaagagagtgtgt 35357332  T
Q  284 tgaaaa 289  Q
    ||||||    
T  35357331 tgaaaa 35357326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 134 - 307
Target Start/End: Original strand, 36480680 - 36480855
Alignment:
Q  134 atgagaaatattagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatc-atgtgggacc 230  Q
    |||||||||  || ||||||| ||||||||| || |||| ||||||||| |  |||||||||||| ||| |||| |  |||| |||||  || |||||||    
T  36480680 atgagaaatgctaacaacacacattttaacacaccctttccaacacactctctttgattggttaaaattcacatgggacccaacaaatttatatgggacc 36480779  T
Q  231 catataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
    || || | ||||||| |||| |||||| ||||| ||||||||||||||  ||||||||||||| |||||||| ||||    
T  36480780 cacatga-tttggtgggacccatgtgaattttagccaatcaaagagagaatgttgaaaagtgtgtgttaaaatgtgt 36480855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 302
Target Start/End: Complemental strand, 14345239 - 14345147
Alignment:
Q  210 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaa 302  Q
    |||||||||||||||||| ||||||||||||||||| | |  |||||  ||||||||||||||||| || |||||||||| | | ||||||||    
T  14345239 cccaccaaatcatgtgggtcccatataaatttggtgggtctcatgtggattttaaccaatcaaagaaagtgtgttgaaaaatatgtgttaaaa 14345147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 238 - 301
Target Start/End: Original strand, 3901572 - 3901635
Alignment:
Q  238 atttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaa 301  Q
    |||||||| |||| |||||| |||||||||||||||||||| |||||||||||||| |||||||    
T  3901572 atttggtgggacccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgttaaa 3901635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 136 - 278
Target Start/End: Original strand, 1753291 - 1753435
Alignment:
Q  136 gagaaatattagcaacacatattttaacatacacttttcaacacactgttt--gattggttaagattaacattgaccccaccaaatcatgtgggacccat 233  Q
    ||||||| ||||||| || || ||||||||||||||||||| | ||| |||  |||||||||| ||| ||||      || ||||||||||||  |||||    
T  1753291 gagaaatgttagcaatacgtactttaacatacacttttcaatatactctttttgattggttaaaatttacatgagtttcatcaaatcatgtggttcccat 1753390  T
Q  234 ataaatttggtgtgacctatgtgagttttaaccaatcaaagagag 278  Q
    |||||||| ||| ||| |||||||  |||||||||||||||||||    
T  1753391 ataaattttgtgagacgtatgtgaactttaaccaatcaaagagag 1753435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 145 - 298
Target Start/End: Original strand, 29955022 - 29955177
Alignment:
Q  145 tagcaacacatattttaacatacacttttcaacacactgttt--gattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 242  Q
    |||||||| ||||||||| | | ||||||||||||||| |||  |||||||||| ||| |||| |  |||| ||||||||||||| |||| |||||||||    
T  29955022 tagcaacatatattttaatacatacttttcaacacactttttttgattggttaaaattcacatgggtcccatcaaatcatgtgggtcccacataaatttg 29955121  T
Q  243 gtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 298  Q
     ||   || || ||| ||||||| ||||||  |||| || ||||||||||| ||||    
T  29955122 atggatcccatatgaattttaactaatcaagaagagtgtattgaaaagtgtgtgtt 29955177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 145 - 298
Target Start/End: Original strand, 30004176 - 30004331
Alignment:
Q  145 tagcaacacatattttaacatacacttttcaacacactgttt--gattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 242  Q
    |||||||| ||||||||| | | ||||||||||||||| |||  |||||||||| ||| |||| |  |||| ||||||||||||| |||| |||||||||    
T  30004176 tagcaacatatattttaatacatacttttcaacacactttttttgattggttaaaattcacatgggtcccatcaaatcatgtgggtcccacataaatttg 30004275  T
Q  243 gtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 298  Q
     ||   || || ||| ||||||| ||||||  |||| || ||||||||||| ||||    
T  30004276 atggatcccatatgaattttaactaatcaagaagagtgtattgaaaagtgtgtgtt 30004331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 224 - 298
Target Start/End: Original strand, 799306 - 799380
Alignment:
Q  224 tgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 298  Q
    |||| |||||||||||| |||| ||||||||| | |||||||||||||||||||  || ||||||||||| ||||    
T  799306 tgggtcccatataaattaggtgggacctatgtcaattttaaccaatcaaagagaaagtattgaaaagtgtgtgtt 799380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 158 - 289
Target Start/End: Complemental strand, 3901635 - 3901508
Alignment:
Q  158 tttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgt 255  Q
    ||||||| ||||||||||||||||| |  |||||||||||| ||| |||| |  ||||||||||||||||     || || | ||||||| |||| ||||    
T  3901635 tttaacacacacttttcaacacactctctttgattggttaaaattcacatgggtcccaccaaatcatgtg-----cacatga-tttggtgggacccatgt 3901542  T
Q  256 gagttttaaccaatcaaagagagcgtgttgaaaa 289  Q
    || |||||||||||||||||||  ||||||||||    
T  3901541 gaattttaaccaatcaaagagaatgtgttgaaaa 3901508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 285
Target Start/End: Original strand, 31205394 - 31205495
Alignment:
Q  184 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgt 283  Q
    ||||||||||||| ||| |||| |  |  ||||||||||||||| |||||||||| |||||| | |  |||||| |||| ||||||||||||||| ||||    
T  31205394 tttgattggttaaaatttacatgggtcttaccaaatcatgtgggtcccatataaaattggtgggtctcatgtgaattttgaccaatcaaagagagtgtgt 31205493  T
Q  284 tg 285  Q
    ||    
T  31205494 tg 31205495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 298
Target Start/End: Original strand, 19560680 - 19560768
Alignment:
Q  210 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 298  Q
    |||||||||||||||||| |||||| |||||| |||   ||  ||||  |||||||||||||||||||| |||||||||| ||| ||||    
T  19560680 cccaccaaatcatgtgggtcccatacaaatttagtggatcccttgtgctttttaaccaatcaaagagagtgtgttgaaaaatgtgtgtt 19560768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 245
Target Start/End: Complemental strand, 36007511 - 36007408
Alignment:
Q  144 ttagcaacacatattttaacatacacttttcaacaca--ctgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaattt 241  Q
    ||||||||||| |||||||||| ||||||||||||||   | ||||| ||||||| ||| ||||   ||||   |||||||||||| |||||||||||||    
T  36007511 ttagcaacacacattttaacattcacttttcaacacattttctttgagtggttaaaattcacatgagcccccataaatcatgtgggccccatataaattt 36007412  T
Q  242 ggtg 245  Q
    ||||    
T  36007411 ggtg 36007408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 307
Target Start/End: Original strand, 35415036 - 35415117
Alignment:
Q  226 ggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
    |||||||||||| |||||||||||||||| || ||||||| ||| ||| ||    ||||||||||||| |||||||| ||||    
T  35415036 ggacccatataattttggtgtgacctatgcgaattttaacaaataaaaaagtatatgttgaaaagtgtgtgttaaaatgtgt 35415117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 307
Target Start/End: Original strand, 37189195 - 37189292
Alignment:
Q  210 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
    |||||||||||||||| ||||| |||| |||| |||  |   |||||| ||||||||||||||||||||  |||| |||| ||||| |||||| ||||    
T  37189195 cccaccaaatcatgtgagacccgtatagatttagtggaattcatgtgaattttaaccaatcaaagagagtctgttaaaaaatgtatattaaaatgtgt 37189292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 295
Target Start/End: Complemental strand, 51541333 - 51541248
Alignment:
Q  210 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtat 295  Q
    |||||||||||||||||| || |||||  ||||||| | |  |||||||||||||||||||||| | || || ||||||| |||||    
T  51541333 cccaccaaatcatgtgggtcctatatacttttggtgggtcacatgtgagttttaaccaatcaaaaatagtgtattgaaaaatgtat 51541248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 26986276 - 26986312
Alignment:
Q  144 ttagcaacacatattttaacatacacttttcaacaca 180  Q
    ||||||||||||||||||||||| |||||||||||||    
T  26986276 ttagcaacacatattttaacatatacttttcaacaca 26986312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 298
Target Start/End: Original strand, 32880985 - 32881136
Alignment:
Q  149 aacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgt 246  Q
    |||||| |||||| || ||| ||||||||| ||| |  |||||||||||| ||| |||| |  ||||| |||||||||||  |||||||||||||||||     
T  32880985 aacacacattttatcacacatttttcaacatactctccttgattggttaatattcacatgggtcccacaaaatcatgtggatcccatataaatttggtgg 32881084  T
Q  247 gacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 298  Q
    | |   ||| | ||||||||||| ||| |||  |||||||||| ||| ||||    
T  32881085 gtctcgtgtaaattttaaccaataaaaaagattgtgttgaaaaatgtgtgtt 32881136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 285
Target Start/End: Complemental strand, 45332629 - 45332557
Alignment:
Q  213 accaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttg 285  Q
    ||||||||||||||| |||||||||||||||||    | |||||| ||||||||||| ||||| || ||||||    
T  45332629 accaaatcatgtgggtcccatataaatttggtggattccatgtgaattttaaccaattaaagaaagtgtgttg 45332557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 14345126 - 14345188
Alignment:
Q  136 gagaaatattagcaacacatattttaacatacacttttcaacacac--tgtttgattggttaa 196  Q
    ||||||| ||||||||||||||||||||| | | ||||||||||||  | |||||||||||||    
T  14345126 gagaaatgttagcaacacatattttaacacatatttttcaacacactttctttgattggttaa 14345188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 40117777 - 40117860
Alignment:
Q  210 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 293  Q
    |||||||||||||||||| ||||  |||||||||   |||| || ||| ||||||||||| ||  |||| ||||||||||||||    
T  40117777 cccaccaaatcatgtgggtcccacttaaatttggcaggacccatttgaattttaaccaatgaataagagtgtgttgaaaagtgt 40117860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 1458515 - 1458573
Alignment:
Q  136 gagaaatattagcaacacatattttaacatacacttttcaacacactgtttgattggtt 194  Q
    ||||||| | |||||| |||||| ||||| ||| ||||||||||||| |||||||||||    
T  1458515 gagaaatgtcagcaacgcatattctaacacacaattttcaacacactctttgattggtt 1458573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 278
Target Start/End: Complemental strand, 11532549 - 11532455
Alignment:
Q  184 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagag 278  Q
    ||||||||||||| ||| |||| |   ||||||||||||||||  ||||||||||||| ||| | | | ||||| |||| |||||||||| ||||    
T  11532549 tttgattggttaaaattcacatgggttccaccaaatcatgtggatcccatataaatttagtgggtcttgtgtgaattttgaccaatcaaaaagag 11532455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 16993416 - 16993339
Alignment:
Q  149 aacacatattttaacatacacttttcaacacactgtttgattggttaagattaacattgaccccaccaaatcatgtgg 226  Q
    |||||| ||| ||| ||||||||| ||||||||| ||| ||||||||| | | | || || |||||||||||||||||    
T  16993416 aacacacattctaatatacactttccaacacactctttaattggttaacagtcatatggatcccaccaaatcatgtgg 16993339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 31205429 - 31205360
Alignment:
Q  238 atttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
    |||||||  |||| |||| | |||||||||||||||||||| |||||| ||| | | |||||||||||||    
T  31205429 atttggtaagacccatgtaaattttaaccaatcaaagagagtgtgttggaaaatatgtgttaaaacgtgt 31205360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 11532514 - 11532574
Alignment:
Q  238 atttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 298  Q
    ||||||||  ||| |||||| |||||||||||||||||||| |||||  ||||||| ||||    
T  11532514 atttggtggaacccatgtgaattttaaccaatcaaagagagtgtgttagaaagtgtgtgtt 11532574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 9e-28; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 184 - 307
Target Start/End: Original strand, 34437623 - 34437745
Alignment:
Q  184 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgt 283  Q
    ||||||||||||| ||| |||| |  |||||||||||||||||||||||||||| ||||| | |||| |||||| |||||||||||||||||||| ||||    
T  34437623 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggacccatataa-tttggggggacccatgtgaattttaaccaatcaaagagagtgtgt 34437721  T
Q  284 tgaaaagtgtatgttaaaacgtgt 307  Q
    |||||||||  |||||||| ||||    
T  34437722 tgaaaagtgcgtgttaaaatgtgt 34437745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 184 - 302
Target Start/End: Complemental strand, 2542816 - 2542698
Alignment:
Q  184 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgt 283  Q
    ||||||||||||| ||| |||| |   |||||||||||||||||  |||||||||||||||| | |  |||| | |||||||||||||||||||| ||||    
T  2542816 tttgattggttaaaattcacatggcttccaccaaatcatgtgggttccatataaatttggtgggcctcatgtaaattttaaccaatcaaagagagtgtgt 2542717  T
Q  284 tgaaaagtgtatgttaaaa 302  Q
    |||||| ||| ||||||||    
T  2542716 tgaaaaatgtgtgttaaaa 2542698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 184 - 278
Target Start/End: Complemental strand, 40374150 - 40374057
Alignment:
Q  184 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagag 278  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||| |||||||||||||| || | ||||||||| |||||||| |||||||||||    
T  40374150 tttgattggttaaaattcacatgg-ccccaccaaatcatgtgggtcccatataaatttgatgagtcctatgtgaattttaaccgatcaaagagag 40374057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 210 - 299
Target Start/End: Complemental strand, 31970208 - 31970119
Alignment:
Q  210 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtta 299  Q
    |||||||||||||||||| ||||||||||||||||| |  | |||||| ||||||||||||||| |||| |||||||||| ||| |||||    
T  31970208 cccaccaaatcatgtgggtcccatataaatttggtgggttcaatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 31970119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 293
Target Start/End: Original strand, 40668986 - 40669063
Alignment:
Q  216 aaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 293  Q
    |||| |||||||||||||||||||||||||  |||  ||||| |||||||||||||||||||| ||||||||||||||    
T  40668986 aaattatgtgggacccatataaatttggtggaacccgtgtgaattttaaccaatcaaagagagtgtgttgaaaagtgt 40669063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 145 - 298
Target Start/End: Complemental strand, 34437752 - 34437598
Alignment:
Q  145 tagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 242  Q
    |||||||||| |||||||||  |||||||||||||||| |  |||||||||||| ||| |||| |  ||| |||||| || |||| |||| || | ||||    
T  34437752 tagcaacacacattttaacacgcacttttcaacacactctctttgattggttaaaattcacatgggtccccccaaattatatgggtcccacatga-tttg 34437654  T
Q  243 gtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 298  Q
    ||| |||| |||||| ||||||||||||||||||||  ||||||||| ||| ||||    
T  34437653 gtgggacccatgtgaattttaaccaatcaaagagagtttgttgaaaaatgtgtgtt 34437598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 299
Target Start/End: Original strand, 7444256 - 7444421
Alignment:
Q  136 gagaaatattagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccat 233  Q
    |||||||  |||||||||| ||||||||| ||| ||||||||||| | |  || || |||||| ||| | |  |  |||||||||||||||||| |||||    
T  7444256 gagaaatgctagcaacacacattttaacacacatttttcaacacattttctttaatcggttaaaattcaaagagttcccaccaaatcatgtgggtcccat 7444355  T
Q  234 ataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtta 299  Q
    |||||||||||  | || |||||| |||||||  ||||||||||  |||||||||||||| |||||    
T  7444356 ataaatttggtaggtcccatgtgaattttaactcatcaaagagaatgtgttgaaaagtgtttgtta 7444421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 144 - 289
Target Start/End: Original strand, 38663634 - 38663781
Alignment:
Q  144 ttagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaattt 241  Q
    |||| |||||| ||||||||| | | ||||||||||||| |  |||||||||||  ||| |||| |  ||||||||||||| |||| || ||||||||||    
T  38663634 ttagtaacacacattttaacacatatttttcaacacactctctttgattggttacaattcacataggtcccaccaaatcatatgggtcctatataaattt 38663733  T
Q  242 ggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaa 289  Q
    |||| | || |||||| ||||||||||| ||| ||||  |||||||||    
T  38663734 ggtgggtcccatgtgaattttaaccaattaaaaagagtatgttgaaaa 38663781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 21281454 - 21281539
Alignment:
Q  138 gaaatattagcaacacatattttaacatacacttttcaacaca---ctgtttgattggttaagattaacattgaccccaccaaatc 220  Q
    |||||||||||||||||||||||||||||||||||||||||||    | ||||||||||||| ||| |||| |  |||||||||||    
T  21281454 gaaatattagcaacacatattttaacatacacttttcaacacattcttttttgattggttaaaattcacataggtcccaccaaatc 21281539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 209 - 299
Target Start/End: Original strand, 49822578 - 49822668
Alignment:
Q  209 ccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtta 299  Q
    ||||||||||| || |||| ||| |||||||||| || || | |||||| |||||||||||||||||||| |||||||||| ||| |||||    
T  49822578 ccccaccaaattatatgggtcccgtataaatttgatgggatccatgtgaattttaaccaatcaaagagagtgtgttgaaaaatgtgtgtta 49822668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 134 - 293
Target Start/End: Complemental strand, 40669093 - 40668934
Alignment:
Q  134 atgagaaatattagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatc-atgtgggacc 230  Q
    |||||||||  |||||||||| |||||||||  |||||||||||||||| |  |||||||||||| ||| |||  |   |||||||||  || |||| ||    
T  40669093 atgagaaatgctagcaacacacattttaaca--cacttttcaacacactctctttgattggttaaaattcacacgggttccaccaaatttatatgggtcc 40668996  T
Q  231 catataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 293  Q
    || |||| |||| || |||| ||||||||||||||||||||||||||| ||||| ||| ||||    
T  40668995 cacataattttg-tgagacccatgtgagttttaaccaatcaaagagagtgtgttaaaatgtgt 40668934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 307
Target Start/End: Original strand, 939359 - 939482
Alignment:
Q  184 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgt 283  Q
    ||||||||||||| ||| ||||  | | || ||||| ||||||  ||||||||||||||||||| || |||| | ||||||||||||||||| |  ||||    
T  939359 tttgattggttaaaattcacataaatctcatcaaattatgtggatcccatataaatttggtgtgtcccatgtaaattttaaccaatcaaagataatgtgt 939458  T
Q  284 tgaaaagtgtatgttaaaacgtgt 307  Q
    |||||   ||||||||||| ||||    
T  939459 tgaaatacgtatgttaaaatgtgt 939482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 302
Target Start/End: Complemental strand, 21281538 - 21281473
Alignment:
Q  238 atttggtgtgacctatgtgagttttaaccaatc-aaagagagcgtgttgaaaagtgtatgttaaaa 302  Q
    |||||||| ||||||||||| |||||||||||| ||| |||  |||||||||||||||||||||||    
T  21281538 atttggtgggacctatgtgaattttaaccaatcaaaaaagaatgtgttgaaaagtgtatgttaaaa 21281473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 38663711 - 38663642
Alignment:
Q  238 atttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
    |||||||| ||||||||||| || ||||||||||||||||| |||||||||| | | |||||||| ||||    
T  38663711 atttggtgggacctatgtgaattgtaaccaatcaaagagagtgtgttgaaaaatatgtgttaaaatgtgt 38663642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 278
Target Start/End: Complemental strand, 39131650 - 39131583
Alignment:
Q  211 ccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagag 278  Q
    ||||||||||| ||||| ||| ||||||||||  | |||| |||||| ||||||||||||||||||||    
T  39131650 ccaccaaatcaagtgggtcccgtataaatttgaggggacccatgtgaattttaaccaatcaaagagag 39131583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 160 - 301
Target Start/End: Original strand, 31970119 - 31970262
Alignment:
Q  160 taacatacacttttcaacacactgttt--gattggttaagattaacattgaccccaccaaa-tcatgtgggacccatataaatttggtgtgacctatgtg 256  Q
    ||||| ||| ||||||||||||| |||  |||||||||| ||| ||||||| ||||||||| | || ||||||||| ||  |||||||| |||| || ||    
T  31970119 taacacacatttttcaacacactctttttgattggttaaaattcacattgaacccaccaaatttatatgggacccacat-gatttggtgggacccatatg 31970217  T
Q  257 agttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaa 301  Q
    |  ||||| |||| ||| |||| ||||||||||| || |||||||    
T  31970218 aaatttaatcaattaaaaagagtgtgttgaaaagcgtgtgttaaa 31970262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 39184236 - 39184184
Alignment:
Q  213 accaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaac 265  Q
    ||||||||||||| ||||||||||||||||||  |||| |||||| |||||||    
T  39184236 accaaatcatgtgtgacccatataaatttggtaggacccatgtgaattttaac 39184184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 293
Target Start/End: Original strand, 45563050 - 45563200
Alignment:
Q  145 tagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 242  Q
    |||||||||  | ||||||||||| |||  |||||||| |  |||||||||||| ||  |||| |  ||||||||||||||| |  | ||||||||||||    
T  45563050 tagcaacacccaatttaacatacattttctaacacactatctttgattggttaaaatgcacatggctcccaccaaatcatgttgatctcatataaatttg 45563149  T
Q  243 gtgtgacct-atgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 293  Q
    ||| || || |||| | |||||||| |||||||| || ||||||||||||||    
T  45563150 gtg-gatctcatgtaaattttaaccgatcaaagaaagtgtgttgaaaagtgt 45563200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 180
Target Start/End: Original strand, 5695662 - 5695697
Alignment:
Q  145 tagcaacacatattttaacatacacttttcaacaca 180  Q
    |||||||||||||||||||| |||||||||||||||    
T  5695662 tagcaacacatattttaacacacacttttcaacaca 5695697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 23317960 - 23318026
Alignment:
Q  210 cccaccaaatcatgtgggacccatataaatttggtgtgacct-atgtgagttttaaccaatcaaagag 276  Q
    |||||||||||||||||| ||||||||||||| ||| || || |||||| ||||||||||| ||||||    
T  23317960 cccaccaaatcatgtgggtcccatataaatttagtg-gatctcatgtgaattttaaccaattaaagag 23318026  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 245
Target Start/End: Complemental strand, 731416 - 731383
Alignment:
Q  212 caccaaatcatgtgggacccatataaatttggtg 245  Q
    |||||||||||||||| |||||||||||||||||    
T  731416 caccaaatcatgtgggtcccatataaatttggtg 731383  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 18075217 - 18075250
Alignment:
Q  212 caccaaatcatgtgggacccatataaatttggtg 245  Q
    |||||||||||||||| |||||||||||||||||    
T  18075217 caccaaatcatgtgggtcccatataaatttggtg 18075250  T

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Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 301
Target Start/End: Original strand, 31851952 - 31852001
Alignment:
Q  252 atgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaa 301  Q
    |||||| ||||||| |||||||||||| |||||||||| ||||| |||||    
T  31851952 atgtgaattttaacaaatcaaagagagtgtgttgaaaaatgtatattaaa 31852001  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 49822683 - 49822607
Alignment:
Q  145 tagcaacacatattttaacatacacttttcaacaca--ctgtttgattggttaagattaacattgaccccaccaaat 219  Q
    |||||||||||||| ||||| ||| |||||||||||  || ||||||||||||| ||| |||| || |||| |||||    
T  49822683 tagcaacacatattataacacacatttttcaacacactctctttgattggttaaaattcacatggatcccatcaaat 49822607  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 7444445 - 7444401
Alignment:
Q  136 gagaaatattagcaacacatattttaacatacacttttcaacaca 180  Q
    ||||||| ||||||||||| ||| ||||| |||||||||||||||    
T  7444445 gagaaatgttagcaacacacattctaacaaacacttttcaacaca 7444401  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 298
Target Start/End: Original strand, 45215378 - 45215466
Alignment:
Q  210 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 298  Q
    ||||||||||||||| ||| || |||||||||||||  ||  || ||| |||||| |||||||| |||  |||| ||||||||| ||||    
T  45215378 cccaccaaatcatgtaggatccgtataaatttggtggaactcatatgaattttaatcaatcaaaaagaatgtgtcgaaaagtgtgtgtt 45215466  T

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Target: chr2 (Bit Score: 59; Significance: 9e-25; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 145 - 268
Target Start/End: Complemental strand, 42094357 - 42094233
Alignment:
Q  145 tagcaacacatattttaacatacacttttcaacacac--tgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 242  Q
    |||||||||| ||||||||| ||||||||||||||||  | ||||||||||||| ||| |||| | ||| ||||||||||||||| ||||||||||||||    
T  42094357 tagcaacacacattttaacacacacttttcaacacacactctttgattggttaaaattcacatggtccc-accaaatcatgtgggtcccatataaatttg 42094259  T
Q  243 gtgtgacctatgtgagttttaaccaa 268  Q
    ||| | || |||||| ||||||||||    
T  42094258 gtgggtcccatgtgaattttaaccaa 42094233  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 210 - 302
Target Start/End: Complemental strand, 15194623 - 15194531
Alignment:
Q  210 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaa 302  Q
    ||||||||||||||| || |||||||| |||||||| |||| |||||| ||||||||||||||| |||| ||| |||||||||||||||||||    
T  15194623 cccaccaaatcatgtcggtcccatatatatttggtgcgacccatgtgacttttaaccaatcaaaaagagtgtgctgaaaagtgtatgttaaaa 15194531  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 136 - 298
Target Start/End: Complemental strand, 25666962 - 25666798
Alignment:
Q  136 gagaaatattagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccat 233  Q
    |||||||  |||||||||| ||||||||||||| ||||||||||||| |  |||||  ||||| ||  |||| || ||||||||||||||| ||  ||||    
T  25666962 gagaaatgctagcaacacacattttaacatacaattttcaacacactctctttgatgtgttaaaatccacatggatcccaccaaatcatgtaggttccat 25666863  T
Q  234 ataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 298  Q
    |||||||||||| | |  |||||| |||||| |||||||| |||| |||||||||| ||| ||||    
T  25666862 ataaatttggtgggtctcatgtgaattttaatcaatcaaatagagtgtgttgaaaaatgtgtgtt 25666798  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 136 - 307
Target Start/End: Complemental strand, 1469891 - 1469730
Alignment:
Q  136 gagaaatattagcaacacatattttaacatacacttttcaacacactgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatat 235  Q
    ||||||||||| ||||||||||||||||| ||||||||          ||| ||||||||| ||| |||| || ||||| |||||||||||| |||||||    
T  1469891 gagaaatattaccaacacatattttaacacacactttt----------ttttattggttaaaattcacatggatcccacaaaatcatgtgggtcccatat 1469802  T
Q  236 aaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
    ||||||||||    | |||||| ||||||||||| ||| |||| |||||||||| | | |||||||| ||||    
T  1469801 aaatttggtggattccatgtgaattttaaccaattaaatagagtgtgttgaaaaatatgtgttaaaatgtgt 1469730  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 210 - 298
Target Start/End: Original strand, 42251214 - 42251302
Alignment:
Q  210 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 298  Q
    |||||||||| |||||||||| ||||||||||||||   || |||||| |||||| ||||||||||||| |||||||||||||| ||||    
T  42251214 cccaccaaattatgtgggacctatataaatttggtggatcccatgtgaattttaatcaatcaaagagagtgtgttgaaaagtgtgtgtt 42251302  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 33171650 - 33171733
Alignment:
Q  210 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 293  Q
    |||||||||||||||  ||||  ||||||||||||| |||| ||||||  ||||||||||||||||||| ||||||||||||||    
T  33171650 cccaccaaatcatgtaagacctgtataaatttggtgggacccatgtgaaatttaaccaatcaaagagagtgtgttgaaaagtgt 33171733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 184 - 291
Target Start/End: Complemental strand, 37810260 - 37810153
Alignment:
Q  184 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgt 283  Q
    ||||||||||||| ||| |||| |  |||||||||| |  |||| ||||||||||||||||| | || |||||| || ||||||||||||||||| ||||    
T  37810260 tttgattggttaaaattcacatgggtcccaccaaattagatgggtcccatataaatttggtgggtcccatgtgaattataaccaatcaaagagagtgtgt 37810161  T
Q  284 tgaaaagt 291  Q
    ||||||||    
T  37810160 tgaaaagt 37810153  T

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Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 215 - 307
Target Start/End: Original strand, 35715029 - 35715121
Alignment:
Q  215 caaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
    |||||||||||||  |||||||| |||| || ||||||||| | |||||||||||||||||||| || ||||||||||| | |||||| ||||    
T  35715029 caaatcatgtgggtaccatataactttgatgggacctatgtaaattttaaccaatcaaagagagtgtattgaaaagtgtgtcttaaaatgtgt 35715121  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 145 - 278
Target Start/End: Complemental strand, 3466542 - 3466407
Alignment:
Q  145 tagcaacacatattttaacatacacttttcaacaca--ctgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 242  Q
    |||||||||| ||||||||| |||||||  |||| |  || ||||||||||||| ||| |||| |   |||| ||||| |||||| ||||||| ||||||    
T  3466542 tagcaacacacattttaacacacactttcaaacatagtctctttgattggttaaaattcacatgggttccactaaatcgtgtgggtcccatatgaatttg 3466443  T
Q  243 gtgtgacctatgtgagttttaaccaatcaaagagag 278  Q
    ||| | |  |||||| ||||||||||||||||||||    
T  3466442 gtgggtctcatgtgaattttaaccaatcaaagagag 3466407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 17383848 - 17383774
Alignment:
Q  210 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgtt 284  Q
    |||||||||| ||||||| |||||| |||||||||| |||| || ||| ||||||||||| |||||||| |||||    
T  17383848 cccaccaaattatgtgggtcccatagaaatttggtgggacccatatgacttttaaccaataaaagagagtgtgtt 17383774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 161 - 299
Target Start/End: Original strand, 42029342 - 42029482
Alignment:
Q  161 aacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgag 258  Q
    |||| ||| |||||||||||||||  |||||| ||||| ||| | || |  || ||||||||||| ||  ||||||||||||||||| | |  ||||||     
T  42029342 aacacacatttttcaacacactgtatttgatttgttaaaattcatatgggtcctaccaaatcatgcggaccccatataaatttggtgggtctcatgtgaa 42029441  T
Q  259 ttttaaccaatcaaagagagcgtgttgaaaagtgtatgtta 299  Q
    ||||||||||| ||| | || |||||||||||||| |||||    
T  42029442 ttttaaccaataaaaaaaagtgtgttgaaaagtgtgtgtta 42029482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 42094282 - 42094350
Alignment:
Q  238 atttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
    |||||||| |||| |||||| |||||||||||||||||| | |||||||||||||| |||||||| ||||    
T  42094282 atttggtgggacc-atgtgaattttaaccaatcaaagagtgtgtgttgaaaagtgtgtgttaaaatgtgt 42094350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 298
Target Start/End: Complemental strand, 16209541 - 16209375
Alignment:
Q  134 atgagaaatattagcaacacatattttaacatacacttttcaacaca--ctgtttgattggttaagattaacattgaccccaccaaa-tcatgtgggacc 230  Q
    |||||||||  |||||||||||||| |||||||||||||||||| ||  || ||||||  ||||| ||| | ||  | ||||||||| | || |||||||    
T  16209541 atgagaaatgctagcaacacatattctaacatacacttttcaacgcattctctttgatcagttaaaattcaaatgaaacccaccaaatttatatgggacc 16209442  T
Q  231 catataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 298  Q
     | | ||||||||||  ||  |||||| ||||||||||| |||||||| |||||| ||||||| ||||    
T  16209441 gaca-aaatttggtggaactcatgtgaattttaaccaattaaagagagtgtgttggaaagtgtgtgtt 16209375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 212 - 299
Target Start/End: Complemental strand, 12779587 - 12779501
Alignment:
Q  212 caccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtta 299  Q
    |||||||||||||||| | ||||| |||||||||   || |||||| ||||||||||||||| |||  |||||||||| |||||||||    
T  12779587 caccaaatcatgtgggtcacatatgaatttggtggatcccatgtgaattttaaccaatcaaa-agaatgtgttgaaaaatgtatgtta 12779501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 293
Target Start/End: Complemental strand, 33069255 - 33069172
Alignment:
Q  210 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 293  Q
    ||||| |||| ||||||| |||||||||| |||||| | |  |||||| |||||||| |||||||| || ||||||||||||||    
T  33069255 cccactaaattatgtgggtcccatataaacttggtgggtctaatgtgaattttaaccgatcaaagaaagtgtgttgaaaagtgt 33069172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 134 - 293
Target Start/End: Original strand, 37810119 - 37810280
Alignment:
Q  134 atgagaaatattagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatc-atgtgggacc 230  Q
    |||||||||  |||||| | | ||||||||  | ||||||||||||||| |  |||||||||||  ||| |||| |  ||||||||||  || |||||||    
T  37810119 atgagaaatggtagcaaaatacattttaactcatacttttcaacacactctctttgattggttataattcacatgggacccaccaaatttatatgggacc 37810218  T
Q  231 catataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 293  Q
    ||| ||| ||||||| |||| |||||| |||||||||||||||| ||| ||| || |||||||    
T  37810219 catctaa-tttggtgggacccatgtgaattttaaccaatcaaagtgagtgtgatggaaagtgt 37810280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 289
Target Start/End: Original strand, 33069145 - 33069297
Alignment:
Q  139 aaatattagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatc-atgtgggacccatat 235  Q
    |||| ||||||||||| ||| || || ||||||||||||||||| |  ||||| |||||| ||| |||||   |||||||| |  || ||||||||| ||    
T  33069145 aaatgttagcaacacacattctatcacacacttttcaacacactttctttgatcggttaaaattcacattagacccaccaagtttatatgggacccacat 33069244  T
Q  236 aaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaa 289  Q
    || ||| ||| |||| | |||| ||||||||||||||| |||| ||||||||||    
T  33069245 aa-tttagtgggacccaagtgatttttaaccaatcaaaaagagtgtgttgaaaa 33069297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 285
Target Start/End: Original strand, 44247590 - 44247664
Alignment:
Q  211 ccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttg 285  Q
    ||||||||| ||||||| |||||| ||||||| ||   || |||||| |||||||||||||||||||| ||||||    
T  44247590 ccaccaaattatgtgggtcccatacaaatttgatggatcccatgtgaattttaaccaatcaaagagagtgtgttg 44247664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 295
Target Start/End: Complemental strand, 4237337 - 4237253
Alignment:
Q  211 ccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtat 295  Q
    ||||||||||||||||| |||||| ||||||||||   || |||| | ||||||||||||||| |||   ||||| |||||||||    
T  4237337 ccaccaaatcatgtgggtcccatacaaatttggtggatcccatgtaaattttaaccaatcaaaaagaaaatgttggaaagtgtat 4237253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 6979160 - 6979116
Alignment:
Q  136 gagaaatattagcaacacatattttaacatacacttttcaacaca 180  Q
    ||||||||| ||||||||| ||||||||| |||||||||||||||    
T  6979160 gagaaatatcagcaacacacattttaacacacacttttcaacaca 6979116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 299
Target Start/End: Original strand, 9430162 - 9430277
Alignment:
Q  184 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgt 283  Q
    ||||||| ||||| ||| | || || || ||||||||||||||| |||||| ||||||| || |    |||||| ||||||||||||||| |||   |||    
T  9430162 tttgattagttaaaatttatatagatcctaccaaatcatgtgggtcccatacaaatttgatggggttcatgtgaattttaaccaatcaaatagaatatgt 9430261  T
Q  284 tgaaaagtgtatgtta 299  Q
    |||||||||| |||||    
T  9430262 tgaaaagtgtgtgtta 9430277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 302
Target Start/End: Complemental strand, 41496106 - 41496055
Alignment:
Q  251 tatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaa 302  Q
    ||||||| ||||||||||||||||| || || ||||||||||| ||||||||    
T  41496106 tatgtgaattttaaccaatcaaagatagtgtattgaaaagtgtgtgttaaaa 41496055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 15194519 - 15194572
Alignment:
Q  145 tagcaacacatattttaacatacacttttca--acacactgtttgattggttaa 196  Q
    |||||||||| ||||||||||||||||||||  |||| || |||||||||||||    
T  15194519 tagcaacacaaattttaacatacacttttcagcacactctttttgattggttaa 15194572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 302
Target Start/End: Complemental strand, 2302126 - 2302055
Alignment:
Q  229 cccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaa 302  Q
    ||||||||||||||||  ||| |||||||||||||||||||| ||||  | |||||||||||| | ||||||||    
T  2302126 cccatataaatttggttggac-tatgtgagttttaaccaatc-aagaaggtgtgttgaaaagtatgtgttaaaa 2302055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 25666877 - 25666946
Alignment:
Q  238 atttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
    |||||||| || | |||||  |||||||  ||||||||||| |||||||||| |||||||||||| ||||    
T  25666877 atttggtgggatccatgtggattttaacacatcaaagagagtgtgttgaaaattgtatgttaaaatgtgt 25666946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 242
Target Start/End: Complemental strand, 36283567 - 36283538
Alignment:
Q  213 accaaatcatgtgggacccatataaatttg 242  Q
    ||||||||||||||||||||||||||||||    
T  36283567 accaaatcatgtgggacccatataaatttg 36283538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 299
Target Start/End: Complemental strand, 45300501 - 45300366
Alignment:
Q  166 acacttttcaacacactgttt--gattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagtttta 263  Q
    ||||||||||| ||||| |||  |||||||||| ||| |||| ||  ||| ||||| || |||| |||||||| |||| ||| | || || ||  |||||    
T  45300501 acacttttcaatacactctttttgattggttaaaattcacatggattccatcaaattatatgggtcccatatagatttagtgggtcccatatgtatttta 45300402  T
Q  264 accaatcaaagagagcgtgttgaaaagtgtatgtta 299  Q
    ||||||||||  ||| |||||||||| ||| |||||    
T  45300401 accaatcaaaaggagtgtgttgaaaaatgtgtgtta 45300366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 184 - 299
Target Start/End: Complemental strand, 3907768 - 3907655
Alignment:
Q  184 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgt 283  Q
    ||||||||||||| ||| |||| |  |||||||||||||||||| ||||||||||||||||| | || |||||| ||||||||||||||  |||| ||||    
T  3907768 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggtcccatataaatttggtgggtcccatgtgaattttaaccaatcaa--agagtgtgt 3907671  T
Q  284 tgaaaagtgtatgtta 299  Q
    |||||||||| |||||    
T  3907670 tgaaaagtgtttgtta 3907655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 136 - 273
Target Start/End: Original strand, 3907631 - 3907768
Alignment:
Q  136 gagaaatattagcaacacatattttaacatacacttttcaacacactgtttgattggttaagattaacattgaccccaccaaa-tcatgtgggacccata 234  Q
    |||||||  |||||||||| ||| ||||| ||||||||||||||||| ||||||||||||| ||| |||| |  ||||||||| | || ||||||||| |    
T  3907631 gagaaatgctagcaacacacattctaacaaacacttttcaacacactctttgattggttaaaattcacatgggacccaccaaatttatatgggacccaca 3907730  T
Q  235 taaatttggtgtgacctatgtgagttttaaccaatcaaa 273  Q
    |  |||||||| |||| |||||| |||||||||||||||    
T  3907731 t-gatttggtgggacccatgtgaattttaaccaatcaaa 3907768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 290
Target Start/End: Original strand, 42420068 - 42420148
Alignment:
Q  210 cccaccaaatcatgtgggacccatataaatttggtgtgacct-atgtgagttttaaccaatcaaagagagcgtgttgaaaag 290  Q
    |||||||||||||||||  |||||||||||||| || || || |||||||||||||||||||||| |||| |||||||||||    
T  42420068 cccaccaaatcatgtggatcccatataaatttgatg-gatctcatgtgagttttaaccaatcaaatagagtgtgttgaaaag 42420148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 210 - 309
Target Start/End: Complemental strand, 25545306 - 25545209
Alignment:
Q  210 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgtat 309  Q
    ||||||||||||||| || ||||||||||||| ||| | |  |||||| ||||||||||||||  |||| |||||||||| ||| |||||||| ||||||    
T  25545306 cccaccaaatcatgtcggtcccatataaatttagtgggtctcatgtgaattttaaccaatcaa--agagtgtgttgaaaaatgtgtgttaaaatgtgtat 25545209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 184 - 302
Target Start/End: Original strand, 41169415 - 41169533
Alignment:
Q  184 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgt 283  Q
    ||||||||||| | ||| |||| ||  ||||||||||||| | | |||||||||||||||||   |  |||||| |||||||  ||||||||||| ||||    
T  41169415 tttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtggatcacatgtgaattttaacggatcaaagagagtgtgt 41169514  T
Q  284 tgaaaagtgtatgttaaaa 302  Q
    |||||| ||| ||||||||    
T  41169515 tgaaaaatgtgtgttaaaa 41169533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 277
Target Start/End: Complemental strand, 36059360 - 36059228
Alignment:
Q  147 gcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggt 244  Q
    |||||||| ||| ||||| | ||||| ||||||||| |  |||||||||||| ||| |||| || |||| ||||||||||||| | |||||||||||| |    
T  36059360 gcaacacacattctaacacatactttccaacacactttatttgattggttaaaatttacatggatcccatcaaatcatgtgggtctcatataaatttgat 36059261  T
Q  245 gtgacctatgtgagttttaaccaatcaaagaga 277  Q
    | | |  |||||| | |||| ||||||||||||    
T  36059260 gggtctcatgtgaatcttaatcaatcaaagaga 36059228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 302
Target Start/End: Complemental strand, 33029582 - 33029490
Alignment:
Q  210 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaa 302  Q
    |||||||||| |  || ||| ||||||||||||||| ||| ||| ||| ||||||| ||| |||||||  |||||||||||| ||||||||||    
T  33029582 cccaccaaattagatgtgactcatataaatttggtgggacttatatgaattttaactaattaaagagaatgtgttgaaaagtatatgttaaaa 33029490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 3771280 - 3771221
Alignment:
Q  184 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttgg 243  Q
    ||||||||||||| ||| ||||||   ||||||||||||| |||||||||||||||||||    
T  3771280 tttgattggttaaaattcacattggttccaccaaatcatgcgggacccatataaatttgg 3771221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 136 - 288
Target Start/End: Complemental strand, 27195415 - 27195262
Alignment:
Q  136 gagaaatattagcaacacatattttaacatacacttttcaa--cacactgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccat 233  Q
    |||||||  ||| |||||| ||||||||| ||||||| |||  ||| || |||||||| |||| ||| ||||    ||||| ||||||||| ||||||||    
T  27195415 gagaaatgctagtaacacacattttaacacacacttt-caatgcactctctttgattgattaaaattcacatgagtcccacaaaatcatgtcggacccat 27195317  T
Q  234 ataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaa 288  Q
    ||||||||||||  | | |||||| |||||| |||| ||| |||| |||||||||    
T  27195316 ataaatttggtggaatccatgtgaattttaatcaattaaaaagagtgtgttgaaa 27195262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 299
Target Start/End: Original strand, 4190084 - 4190201
Alignment:
Q  184 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagaga--gcgt 281  Q
    ||||||||||||| ||| |||| || |||| ||||| | ||||| || || | ||||||||| | || |||||| |||||||| ||||||||||  | ||    
T  4190084 tttgattggttaaaattcacatggatcccaacaaattacgtgggtcctatgtgaatttggtgggtcccatgtgaattttaacctatcaaagagaccgtgt 4190183  T
Q  282 gttgaaaagtgtatgtta 299  Q
    |||||||||||| |||||    
T  4190184 gttgaaaagtgtgtgtta 4190201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 145 - 293
Target Start/End: Original strand, 25545204 - 25545352
Alignment:
Q  145 tagcaacacatattttaacatacacttttcaacacactgtttgattggttaagattaacattgaccccaccaaa-tcatgtgggacccatataaatttgg 243  Q
    |||||| ||| ||||||||| ||| ||||||||||||| ||||||||||||| ||| ||||    ||||| ||| | || ||||||| | ||  ||||||    
T  25545204 tagcaatacacattttaacacacatttttcaacacactctttgattggttaaaattcacatgagacccactaaatttatatgggaccgacat-gatttgg 25545302  T
Q  244 tgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 293  Q
    || |||  | |||| |||||||||||||||||||| ||||| ||| ||||    
T  25545303 tgggactcacgtgaattttaaccaatcaaagagagtgtgttaaaatgtgt 25545352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 289
Target Start/End: Original strand, 33029469 - 33029624
Alignment:
Q  136 gagaaatattagcaacacatattttaacatacacttttcaacaca--ctgtttgattggttaagattaacattgaccccaccaaa-tcatgtgggaccca 232  Q
    |||||||  |||||||||||||||||||||| |||||||||||||  || ||| ||| ||||| ||| | ||    ||||||||| | || || | | ||    
T  33029469 gagaaatgctagcaacacatattttaacatatacttttcaacacattctctttaattagttaaaattcatataagtcccaccaaatttatatgagtcaca 33029568  T
Q  233 tataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaa 289  Q
    | | ||||||||| |||  ||||||||||||||| ||||||||||| ||||||||||    
T  33029569 tct-aatttggtgggactcatgtgagttttaaccgatcaaagagagtgtgttgaaaa 33029624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 4158193 - 4158102
Alignment:
Q  184 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaaga 275  Q
    ||||||||||||| ||| |||   | |||| ||||| ||||||||| |||||||||||||| ||| | |||||| ||| |||| ||||||||    
T  4158193 tttgattggttaaaattcacacgaatcccatcaaattatgtgggactcatataaatttggtatgatccatgtgaatttcaaccgatcaaaga 4158102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 17474866 - 17474916
Alignment:
Q  252 atgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaa 302  Q
    |||||| |||||| ||||||||||| | |||||||||||||| ||||||||    
T  17474866 atgtgaattttaatcaatcaaagagtgtgtgttgaaaagtgtgtgttaaaa 17474916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 35244984 - 35244938
Alignment:
Q  136 gagaaatattagcaacacatattttaacatacacttttcaacacact 182  Q
    |||||||  |||||||||| |||||||||||||||| ||||||||||    
T  35244984 gagaaatgctagcaacacacattttaacatacacttgtcaacacact 35244938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 32309737 - 32309649
Alignment:
Q  160 taacatacacttttcaacaca--ctgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgt 246  Q
    ||||| |||||||||||| ||  || ||||||| ||||| ||| ||||| | |||||||||||||||| | |||||||||  |||||||    
T  32309737 taacacacacttttcaacgcattctctttgatttgttaaaatttacattaatcccaccaaatcatgtgagtcccatataacattggtgt 32309649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 7721397 - 7721453
Alignment:
Q  233 tataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaa 289  Q
    ||||||||||||| | ||||||||| || |||||||| |||||||| ||||| ||||    
T  7721397 tataaatttggtgggtcctatgtgaattataaccaattaaagagagtgtgttaaaaa 7721453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 292
Target Start/End: Complemental strand, 22399852 - 22399776
Alignment:
Q  216 aaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtg 292  Q
    ||||||| |||| | ||||| ||||||||| | |  |||||| ||||| ||||||||| |||| |||||||||||||    
T  22399852 aaatcatctgggtctcatatgaatttggtgggtctcatgtgaattttatccaatcaaaaagagtgtgttgaaaagtg 22399776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 35244924 - 35244968
Alignment:
Q  263 aaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
    ||||||||||||| || ||||||| ||||||||||||||| ||||    
T  35244924 aaccaatcaaagaaagtgtgttgacaagtgtatgttaaaatgtgt 35244968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 245
Target Start/End: Original strand, 38029531 - 38029626
Alignment:
Q  149 aacacatattttaacatacacttttcaacacactgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtg 245  Q
    |||||| ||| ||||| ||| ||| ||||||||| ||||||||||||| ||| |||| |  | |||||||||||||||  | |||||||||| ||||    
T  38029531 aacacacattctaacacacattttccaacacact-tttgattggttaaaattcacatgggtctcaccaaatcatgtggatctcatataaattgggtg 38029626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 188 - 299
Target Start/End: Complemental strand, 2276387 - 2276276
Alignment:
Q  188 attggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaa 287  Q
    ||||||||| ||| ||||  | |||||||||| ||||||| ||| ||||||||||||| || | |||||| |||||||||||||||||||| ||||||||    
T  2276387 attggttaaaattcacatgaatcccaccaaattatgtgggtcccttataaatttggtgggatccatgtgaattttaaccaatcaaagagagtgtgttgaa 2276288  T
Q  288 aagtgtatgtta 299  Q
    |||||| |||||    
T  2276287 aagtgtgtgtta 2276276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 145 - 293
Target Start/End: Complemental strand, 12275893 - 12275743
Alignment:
Q  145 tagcaacacatattttaacatacacttttcaacacactgttt--gattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 242  Q
    |||||||||| ||| ||||| ||||||| ||||||||| | |  |||||||||| ||| | || |  |||||||||||||||||| ||||||||||||||    
T  12275893 tagcaacacacattctaacacacactttccaacacactctcttcgattggttaaaattcatatgggtcccaccaaatcatgtgggtcccatataaatttg 12275794  T
Q  243 gtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 293  Q
    ||| | || |||||| |||||||||||  ||||||| |||||| |||||||    
T  12275793 gtgggtcccatgtgatttttaaccaattgaagagagtgtgttggaaagtgt 12275743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 160 - 293
Target Start/End: Complemental strand, 49107045 - 49106911
Alignment:
Q  160 taacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtga 257  Q
    ||||| ||||||||||||||||| |  |||||||||||| ||| |||| |  |||||||||||||| |||||| |||||||||||||  |||| ||||||    
T  49107045 taacacacacttttcaacacactctctttgattggttaaaattcacataggtcccaccaaatcatgcgggacc-atataaatttggtaggacccatgtga 49106947  T
Q  258 gttttaaccaatcaaagagagcgtgttgaaaagtgt 293  Q
     |||||| ||||||||||| | |||||| |||||||    
T  49106946 attttaatcaatcaaagagtgtgtgttggaaagtgt 49106911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 145 - 293
Target Start/End: Complemental strand, 40134539 - 40134393
Alignment:
Q  145 tagcaacacatattttaacatacacttttcaacacactgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggt 244  Q
    ||||||| || ||||||||| ||||||| ||||||||| | ||||||||||| ||| |||| |  |||||||||| ||||||| ||||||||||||||||    
T  40134539 tagcaacccacattttaacacacactttccaacacactctctgattggttaaaattcacatgggtcccaccaaattatgtgggtcccatataaatttggt 40134440  T
Q  245 gtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 293  Q
      | ||  ||||| |||  ||||||||||||||| ||||| ||| ||||    
T  40134439 aggtcccctgtgaattt--accaatcaaagagagtgtgttaaaatgtgt 40134393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 49106984 - 49107045
Alignment:
Q  238 atttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtta 299  Q
    |||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||||    
T  49106984 atttggtgggacctatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgtta 49107045  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 145 - 293
Target Start/End: Complemental strand, 26863068 - 26862918
Alignment:
Q  145 tagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 242  Q
    |||||||||| ||||||| | |||||||||| || ||| |  || ||||||||| ||| |||| |  |||||||||||||||||| || |||||||| ||    
T  26863068 tagcaacacacattttaatacacacttttcatcaaactctctttaattggttaaaattcacatgggtcccaccaaatcatgtgggtcctatataaatatg 26862969  T
Q  243 gtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 293  Q
    |||   || |||||| |||||||||||||| ||||| ||||| ||| ||||    
T  26862968 gtgaatcccatgtgaattttaaccaatcaaggagagtgtgttaaaatgtgt 26862918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 299
Target Start/End: Complemental strand, 5443684 - 5443529
Alignment:
Q  145 tagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 242  Q
    |||||||||| ||| ||||| ||| ||||||||| ||| |  |||||||||||| ||| |||| | | ||||||||| ||||||  ||||||||| |||     
T  5443684 tagcaacacacattctaacacacatttttcaacatactttctttgattggttaaaattcacatag-ctccaccaaattatgtggatcccatataactttt 5443586  T
Q  243 gtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtta 299  Q
    ||| | ||||||||| || |||||  ||||| |||  |||||||||||||| |||||    
T  5443585 gtgggtcctatgtgaattctaaccggtcaaacagaatgtgttgaaaagtgtgtgtta 5443529  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 214 - 291
Target Start/End: Complemental strand, 10056707 - 10056630
Alignment:
Q  214 ccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagt 291  Q
    |||||||||||||| |||||||||| |||||| |  | |||||| |||| |||||||||| |||| ||||||||||||    
T  10056707 ccaaatcatgtgggtcccatataaaattggtgggttccatgtgaattttgaccaatcaaaaagagtgtgttgaaaagt 10056630  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 184 - 307
Target Start/End: Complemental strand, 3235673 - 3235550
Alignment:
Q  184 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgt 283  Q
    ||||||||||||| ||| |||| |  || ||| ||  ||||||| ||||| |||||||| || | |  |||||| |||||||||||||||||||| || |    
T  3235673 tttgattggttaaaattcacatgggtccgacccaaatatgtgggtcccatgtaaatttgatgggtctcatgtgaattttaaccaatcaaagagagtgtat 3235574  T
Q  284 tgaaaagtgtatgttaaaacgtgt 307  Q
    || ||||||| |||||||| ||||    
T  3235573 tggaaagtgtgtgttaaaatgtgt 3235550  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 42986261 - 42986319
Alignment:
Q  211 ccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaat 269  Q
    ||||||||||||||| ||||||| ||||||||||| || |||||||| |||||| ||||    
T  42986261 ccaccaaatcatgtgagacccatttaaatttggtgggatctatgtgaattttaatcaat 42986319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 145 - 299
Target Start/End: Complemental strand, 5452729 - 5452574
Alignment:
Q  145 tagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 242  Q
    |||||||||| ||| ||||| ||| ||||||||| ||| |  |||||||||||| ||| |||| | | ||||| ||| ||||||  ||||||||| |||     
T  5452729 tagcaacacacattctaacacacatttttcaacatactttctttgattggttaaaattcacatag-ctccacccaattatgtggatcccatataactttt 5452631  T
Q  243 gtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtta 299  Q
    ||| | ||||||||| || |||||  ||||| |||  |||||||||||||| |||||    
T  5452630 gtgggtcctatgtgaattctaaccggtcaaacagaatgtgttgaaaagtgtgtgtta 5452574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 302
Target Start/End: Original strand, 31042391 - 31042446
Alignment:
Q  247 gacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaa 302  Q
    |||| ||| |||||||||||||||||||||||  | || |||||||||||||||||    
T  31042391 gacccatgcgagttttaaccaatcaaagagagtatattaaaaagtgtatgttaaaa 31042446  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 302
Target Start/End: Original strand, 40134452 - 40134527
Alignment:
Q  224 tgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaa 302  Q
    ||||||||| |||| ||||||| |||| |||||| ||||||||||||  |||||| |||||| ||||||| ||||||||    
T  40134452 tgggacccacataa-tttggtgggacccatgtgaattttaaccaatc--agagagtgtgttggaaagtgtgtgttaaaa 40134527  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 293
Target Start/End: Original strand, 2276254 - 2276411
Alignment:
Q  134 atgagaaatattagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaa-tcatgtgggacc 230  Q
    ||||||||| |||||||||||     ||||| ||||||||||||||||| |  |||||||||||| ||| |||| || ||||||||| | ||  ||||||    
T  2276254 atgagaaatgttagcaacacac----taacacacacttttcaacacactctctttgattggttaaaattcacatggatcccaccaaatttataagggacc 2276349  T
Q  231 catataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 293  Q
    || || ||||||||| ||   |||||| ||||||||||| ||||| || ||||| ||| ||||    
T  2276350 cacat-aatttggtgggattcatgtgaattttaaccaattaaagatagtgtgttaaaatgtgt 2276411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 7017164 - 7017225
Alignment:
Q  237 aatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 298  Q
    ||||||||  ||| ||||||| |||||||||||||||||||| || ||||||| ||| ||||    
T  7017164 aatttggtaggacttatgtgaattttaaccaatcaaagagagtgtattgaaaaatgtgtgtt 7017225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 7032522 - 7032583
Alignment:
Q  237 aatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 298  Q
    ||||||||  ||| ||||||| |||||||||||||||||||| || ||||||| ||| ||||    
T  7032522 aatttggtaggacttatgtgaattttaaccaatcaaagagagtgtattgaaaaatgtgtgtt 7032583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 12275817 - 12275878
Alignment:
Q  238 atttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtta 299  Q
    |||||||| |||| || ||| |||||||||||| ||||||| |||||| ||||||| |||||    
T  12275817 atttggtgggacccatatgaattttaaccaatcgaagagagtgtgttggaaagtgtgtgtta 12275878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 26862992 - 26863061
Alignment:
Q  238 atttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
    |||||||| |||| |||||| ||||||||||| ||||||||  || |||||||||| | |||||| ||||    
T  26862992 atttggtgggacccatgtgaattttaaccaattaaagagagtttgatgaaaagtgtgtattaaaatgtgt 26863061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 251
Target Start/End: Complemental strand, 18089836 - 18089749
Alignment:
Q  166 acacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacct 251  Q
    |||||||| |||||||| |  ||| |||||||| ||| |||| |  || ||||||| |||||| |||||||||||||||||| |||||    
T  18089836 acactttttaacacactctctttggttggttaaaattcacatgggtccaaccaaattatgtggaacccatataaatttggtgggacct 18089749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 307
Target Start/End: Original strand, 22026089 - 22026137
Alignment:
Q  259 ttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 307  Q
    |||||||| |||||| ||||| ||||||||| ||| |||||||||||||    
T  22026089 ttttaacctatcaaatagagcatgttgaaaaatgtgtgttaaaacgtgt 22026137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 173
Target Start/End: Complemental strand, 31042458 - 31042430
Alignment:
Q  145 tagcaacacatattttaacatacactttt 173  Q
    |||||||||||||||||||||||||||||    
T  31042458 tagcaacacatattttaacatacactttt 31042430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 145 - 275
Target Start/End: Complemental strand, 136476 - 136344
Alignment:
Q  145 tagcaacacatattttaacatacacttttcaacacactgttt--gattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 242  Q
    |||||| ||| ||||||||| ||| ||||||||||||| |||  |||||||||| | | ||||    |||| ||||||||||| ||||||||||||||||    
T  136476 tagcaatacacattttaacacacatttttcaacacactctttttgattggttaaaactcacatgtgtcccatcaaatcatgtgtgacccatataaatttg 136377  T
Q  243 gtgtgacctatgtgagttttaaccaatcaaaga 275  Q
     || |||  || ||| |||||||||||||||||    
T  136376 atgggactcatatgaattttaaccaatcaaaga 136344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 309
Target Start/End: Original strand, 136414 - 136471
Alignment:
Q  252 atgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgtat 309  Q
    |||||||||||||||||||||| |||| |||||||||| ||| |||||||| ||||||    
T  136414 atgtgagttttaaccaatcaaaaagagtgtgttgaaaaatgtgtgttaaaatgtgtat 136471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 362
Target Start/End: Complemental strand, 1203 - 1168
Alignment:
Q  327 aatacactcacaaacgtttgctcaaatcaagaggtc 362  Q
    |||||| |||||||||||||||||||||||||||||    
T  1203 aatacaatcacaaacgtttgctcaaatcaagaggtc 1168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 301
Target Start/End: Original strand, 8232 - 8322
Alignment:
Q  210 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaa 301  Q
    |||||||||||||||||| |||| |||| ||||||| ||   |||||| ||||| ||||||||| |||  | |||||||||||| |||||||    
T  8232 cccaccaaatcatgtgggtcccacataa-tttggtgggattcatgtgaattttagccaatcaaaaagaatgcgttgaaaagtgtgtgttaaa 8322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 309
Target Start/End: Original strand, 201050 - 201107
Alignment:
Q  252 atgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgtat 309  Q
    |||||| | ||||| |||||||||||| ||||||| |||||| |||||||| ||||||    
T  201050 atgtgaatcttaacaaatcaaagagagtgtgttgataagtgtgtgttaaaatgtgtat 201107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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