View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12994_low_10 (Length: 362)

Name: NF12994_low_10
Description: NF12994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12994_low_10
NF12994_low_10
[»] chr7 (11 HSPs)
chr7 (40-346)||(20145813-20146119)
chr7 (40-328)||(14986989-14987278)
chr7 (40-328)||(15416600-15416889)
chr7 (40-344)||(2546914-2547215)
chr7 (112-340)||(17600539-17600766)
chr7 (44-306)||(24832402-24832670)
chr7 (112-346)||(3743380-3743620)
chr7 (112-299)||(4173426-4173615)
chr7 (112-248)||(10649207-10649344)
chr7 (163-280)||(18046386-18046501)
chr7 (193-277)||(9022558-9022642)
[»] chr8 (23 HSPs)
chr8 (40-346)||(28371034-28371341)
chr8 (40-341)||(9218079-9218384)
chr8 (112-255)||(23540207-23540351)
chr8 (217-343)||(10660970-10661095)
chr8 (113-296)||(9286315-9286498)
chr8 (112-258)||(16600591-16600737)
chr8 (62-224)||(10661748-10661911)
chr8 (143-285)||(13110204-13110345)
chr8 (112-188)||(24577332-24577408)
chr8 (208-255)||(26136195-26136242)
chr8 (145-285)||(18672125-18672261)
chr8 (190-280)||(22713661-22713751)
chr8 (112-280)||(25095053-25095223)
chr8 (112-280)||(27123570-27123736)
chr8 (235-280)||(9006931-9006976)
chr8 (193-244)||(15340931-15340983)
chr8 (193-244)||(15429996-15430048)
chr8 (193-244)||(15521300-15521352)
chr8 (225-281)||(24680835-24680890)
chr8 (193-244)||(41652021-41652073)
chr8 (193-244)||(23355487-23355539)
chr8 (193-244)||(32352217-32352269)
chr8 (193-244)||(32368878-32368930)
[»] chr2 (13 HSPs)
chr2 (40-348)||(18929235-18929543)
chr2 (54-346)||(26650839-26651133)
chr2 (112-340)||(17402729-17402958)
chr2 (112-327)||(25520385-25520601)
chr2 (112-296)||(31404020-31404205)
chr2 (40-175)||(19878981-19879117)
chr2 (40-296)||(24543870-24544126)
chr2 (112-248)||(29891239-29891376)
chr2 (137-280)||(20478255-20478396)
chr2 (112-244)||(28760593-28760724)
chr2 (195-280)||(17162015-17162100)
chr2 (193-280)||(15438056-15438143)
chr2 (195-296)||(17636690-17636791)
[»] chr5 (17 HSPs)
chr5 (53-320)||(19217911-19218177)
chr5 (48-306)||(20064388-20064653)
chr5 (40-306)||(20060802-20061075)
chr5 (40-255)||(20713228-20713443)
chr5 (39-255)||(23210024-23210240)
chr5 (40-306)||(20058550-20058824)
chr5 (42-255)||(25951315-25951528)
chr5 (112-224)||(23379361-23379474)
chr5 (40-280)||(17167172-17167417)
chr5 (190-280)||(19924022-19924112)
chr5 (163-296)||(24878356-24878489)
chr5 (190-280)||(19926749-19926839)
chr5 (142-280)||(17987482-17987619)
chr5 (54-171)||(21165282-21165399)
chr5 (313-344)||(24878288-24878319)
chr5 (195-244)||(31533052-31533102)
chr5 (268-300)||(25951260-25951292)
[»] chr3 (17 HSPs)
chr3 (40-346)||(15686859-15687166)
chr3 (112-339)||(24699049-24699275)
chr3 (112-340)||(26010836-26011067)
chr3 (112-327)||(13428700-13428914)
chr3 (39-344)||(4765605-4765916)
chr3 (112-319)||(4769742-4769949)
chr3 (40-255)||(7148790-7149005)
chr3 (112-346)||(4832504-4832740)
chr3 (40-263)||(9033398-9033622)
chr3 (40-252)||(29614512-29614724)
chr3 (112-290)||(23378488-23378668)
chr3 (115-255)||(16242928-16243069)
chr3 (163-286)||(27304424-27304547)
chr3 (235-280)||(13409834-13409879)
chr3 (212-286)||(8737234-8737308)
chr3 (212-286)||(9089472-9089546)
chr3 (193-244)||(48896075-48896127)
[»] chr6 (16 HSPs)
chr6 (115-346)||(22397545-22397777)
chr6 (40-255)||(16177304-16177519)
chr6 (39-251)||(15830026-15830238)
chr6 (137-337)||(17524797-17524998)
chr6 (112-255)||(1177202-1177349)
chr6 (163-296)||(18713709-18713842)
chr6 (115-280)||(17947842-17948007)
chr6 (191-296)||(14762985-14763090)
chr6 (40-306)||(31126065-31126351)
chr6 (193-294)||(28712360-28712461)
chr6 (193-244)||(13002854-13002906)
chr6 (211-280)||(25945847-25945916)
chr6 (195-244)||(24154179-24154229)
chr6 (193-237)||(10163272-10163317)
chr6 (193-244)||(16143188-16143240)
chr6 (193-296)||(16793265-16793368)
[»] chr4 (9 HSPs)
chr4 (72-346)||(11361595-11361869)
chr4 (44-339)||(9409070-9409370)
chr4 (114-296)||(16675086-16675269)
chr4 (193-255)||(5358040-5358102)
chr4 (112-280)||(4697470-4697638)
chr4 (234-280)||(18558469-18558515)
chr4 (112-244)||(12424798-12424927)
chr4 (193-243)||(26654144-26654195)
chr4 (193-244)||(24924906-24924958)
[»] chr1 (16 HSPs)
chr1 (40-301)||(20146169-20146437)
chr1 (40-320)||(11013745-11014027)
chr1 (40-290)||(33103021-33103273)
chr1 (40-252)||(13201980-13202192)
chr1 (112-277)||(20150422-20150588)
chr1 (124-296)||(36571655-36571826)
chr1 (126-296)||(22607834-22608003)
chr1 (115-280)||(17615274-17615439)
chr1 (163-253)||(22620063-22620153)
chr1 (137-280)||(22533687-22533829)
chr1 (112-175)||(13232737-13232801)
chr1 (224-296)||(20866221-20866293)
chr1 (1-32)||(20146549-20146580)
chr1 (235-274)||(20886571-20886610)
chr1 (194-244)||(23455191-23455242)
chr1 (142-266)||(18780587-18780712)
[»] scaffold0555 (1 HSPs)
scaffold0555 (40-301)||(5582-5851)
[»] scaffold0264 (1 HSPs)
scaffold0264 (40-346)||(20793-21097)
[»] scaffold0002 (1 HSPs)
scaffold0002 (40-276)||(374041-374275)
[»] scaffold0337 (2 HSPs)
scaffold0337 (124-296)||(17221-17392)
scaffold0337 (181-296)||(4546-4661)
[»] scaffold0016 (1 HSPs)
scaffold0016 (112-224)||(12991-13104)
[»] scaffold0142 (1 HSPs)
scaffold0142 (112-265)||(20572-20725)
[»] scaffold1102 (1 HSPs)
scaffold1102 (112-248)||(859-996)
[»] scaffold0795 (1 HSPs)
scaffold0795 (40-104)||(5971-6035)
[»] scaffold0431 (1 HSPs)
scaffold0431 (112-244)||(5048-5177)
[»] scaffold0170 (1 HSPs)
scaffold0170 (235-280)||(1282-1326)
[»] scaffold0024 (1 HSPs)
scaffold0024 (193-244)||(38915-38967)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 40 - 346
Target Start/End: Complemental strand, 20146119 - 20145813
Alignment:
Q  40 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aa 138  Q
    ||||||||||||| |||||| |||||||| ||||||||| |||||||| |||||||||||||||| |  || ||||||||||  |||||| |||||  ||    
T  20146119 tgggagacaagcggttgtcttcatggaaggagtgctgatcgtgggattagtttctttccaagttatttcctatgtataaatagtagtttttcataggtaa 20146020  T
Q  139 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 238  Q
    |||||||||||||||||| || || |||||||||||| || |||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20146019 aacgggtcgcaaatcacccatgcataattctaaaacactcgaagtactggcgcgagagaagagagtcataaagaatgtatgtaaaggatttgtcgaacca 20145920  T
Q  239 cctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaag 338  Q
    |||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| ||||||| || |||||||||||||||||| ||||||||||||||    
T  20145919 cctttatttttaatgcattgtattctacctttccttgaagtttctgcaatttaaagttaatgcatttactttgcttttaaaacct-ttttctgtcgaaag 20145821  T
Q  339 acgccaca 346  Q
    ||||||||    
T  20145820 acgccaca 20145813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 40 - 328
Target Start/End: Original strand, 14986989 - 14987278
Alignment:
Q  40 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aa 138  Q
    ||||||||||||| ||||||||||||||| |||| |||| ||| |||  |||||||||||  ||| | ||||||||||||||||||||||||||||  ||    
T  14986989 tgggagacaagcggttgtctacatggaaggagtgatgatcgtgagataagtttctttccac-ttattttctttgtataaataagagttttccatagggaa 14987087  T
Q  139 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 238  Q
    || |||||||| |||||||||||| |||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  14987088 aatgggtcgcatatcacctatacataattctaaaacactcgaagtaccggtgcgagagaaaagagtcataaagaatgtatgtaaaagatttttcgaacca 14987187  T
Q  239 cctttatttttaatgcattgta-ttttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaacctttttt 328  Q
    |||||||||||||||   |||| ||||| |||| ||||||||| || |||||||||||||||||||| ||||| |||||||| ||||||||    
T  14987188 cctttatttttaatgagatgtatttttatcttttctttaagtttctccaatttaaacttaatgcctttacttttcttttaaaccctttttt 14987278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 40 - 328
Target Start/End: Original strand, 15416600 - 15416889
Alignment:
Q  40 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aa 138  Q
    ||||||||||||| ||||||||||||||| |||| |||| ||| |||  |||||||||||  ||| | ||||||||||||||||||||||||||||  ||    
T  15416600 tgggagacaagcggttgtctacatggaaggagtgatgatcgtgagataagtttctttccac-ttattttctttgtataaataagagttttccatagggaa 15416698  T
Q  139 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 238  Q
    || |||||||| |||||||||||| |||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  15416699 aatgggtcgcatatcacctatacataattctaaaacactcgaagtaccggtgcgagagaaaagagtcataaagaatgtatgtaaaagatttttcgaacca 15416798  T
Q  239 cctttatttttaatgcattgta-ttttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaacctttttt 328  Q
    |||||||||||||||   |||| ||||| |||| ||||||||| || |||||||||||||||||||| ||||| |||||||| ||||||||    
T  15416799 cctttatttttaatgagatgtatttttatcttttctttaagtttctccaatttaaacttaatgcctttacttttcttttaaaccctttttt 15416889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 40 - 344
Target Start/End: Complemental strand, 2547215 - 2546914
Alignment:
Q  40 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtat-ctttgtataaataagagttttccataga-a 137  Q
    ||||||||||||| ||||||||||||||| |||| |||| |||||||| ||||||||| | |||| | | || ||||||| ||| ||||||||||||  |    
T  2547215 tgggagacaagcggttgtctacatggaaggagtgttgatcgtgggattagtttctttcta-gttatttttctatgtataagtaatagttttccataggga 2547117  T
Q  138 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 237  Q
    ||||||||||||||||||||||| | |||||||||||| || ||||||||   |||||||||| |||||||||||||| |||||||||||||| |  |||    
T  2547116 aaacgggtcgcaaatcacctatatagaattctaaaacactcgaagtaccgacccgagagaaaaaagtcataaagaatggatgtaaaggatttggcagacc 2547017  T
Q  238 acctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaa 337  Q
    |||||||||||     ||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||| |||||||    
T  2547016 acctttatttta----cattgtattttacctttcctttaagtttctgcaatttaaacttaatgccttttctttgcttttaaaaccttttttccgtcgaaa 2546921  T
Q  338 gacgcca 344  Q
    |||||||    
T  2546920 gacgcca 2546914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 112 - 340
Target Start/End: Complemental strand, 17600766 - 17600539
Alignment:
Q  112 tgtataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 210  Q
    ||||||||||  ||||||||||| | |||||| ||||||||||||||||||| |||||||||||| || |||||||||  |||||| |||||||||||||    
T  17600766 tgtataaatagtagttttccataaggaaaacgtgtcgcaaatcacctatacagaattctaaaacactcgaagtaccggcacgagaggaaagagtcataaa 17600667  T
Q  211 gaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaacttt 310  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||| ||| ||||||||||||||  || ||||||||| |  | |||| |||||    
T  17600666 gaatgtatgtaaaggatttgtcgaacaacctttatttttaatgctttgtatgttatctttcctttaagtttatggaatttaaacct--ttcctttacttt 17600569  T
Q  311 gcttttaaaaccttttttctgtcgaaagac 340  Q
     ||||||||||||||||| |||||||||||    
T  17600568 tcttttaaaaccttttttttgtcgaaagac 17600539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 44 - 306
Target Start/End: Complemental strand, 24832670 - 24832402
Alignment:
Q  44 agacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacg 142  Q
    ||||||||| ||||||||||||||| |||| ||||  || |||| ||||||||| |  ||| |  || ||||||||||| |||||| |||||  ||||||    
T  24832670 agacaagcggttgtctacatggaaggagtggtgatcatgagattagtttctttctac-ttatttcctatgtataaataatagtttttcatagggaaaacg 24832572  T
Q  143 ggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctt 242  Q
    ||||||||||| |||||||| |||| ||||||| || ||||| ||| || |||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  24832571 ggtcgcaaatcgcctatacagaatt-taaaacactcgaagtatcggcgcaagagaaaagagtcataaagaatgtatgtaaagaatttgtcgaaccaccat 24832473  T
Q  243 tatttttaatgca-------ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaa 306  Q
    |||||||||||||       |||||||||  |||| ||||||||| |||||||||||||||||||| ||||    
T  24832472 tatttttaatgcacttgcatttgtattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 24832402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 112 - 346
Target Start/End: Complemental strand, 3743620 - 3743380
Alignment:
Q  112 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaa-cattcaaagtaccggagcgagagaaaagagtcataa 209  Q
    ||||||||||  ||||||||| ||| |||||||||||||||||||||||||| |||||||||| || || ||||||||| ||   |||||||||||||||    
T  3743620 tgtataaatagtagttttccaaagagaaaacgggtcgcaaatcacctatacataattctaaaaacactcgaagtaccggtgctgaagaaaagagtcataa 3743521  T
Q  210 agaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagttcctgcaattt-aaactt-aatgccttaac 307  Q
    | |||||||  |||||||||||||||||||||||||||||||||| ||||| ||||  ||||||| ||| | ||||||||| |||||| |||||||| ||    
T  3743520 aaaatgtatacaaaggatttgtcgaaccacctttatttttaatgccttgtactttatttttccttcaagattctgcaatttcaaacttgaatgcctttac 3743421  T
Q  308 tttgctttt--aaaaccttttttctgtcgaaagacgccaca 346  Q
    ||| || ||  |||||| ||||| ||||||||||| |||||    
T  3743420 tttactgttaaaaaaccctttttttgtcgaaagacaccaca 3743380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 112 - 299
Target Start/End: Original strand, 4173426 - 4173615
Alignment:
Q  112 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 210  Q
    ||||||||||  || |||||||||  ||||||||||||||||| |||||| | |||||||||||| || ||||| ||  |||||||||||||||||||||    
T  4173426 tgtataaatattagatttccatagggaaaacgggtcgcaaatcgcctatagagaattctaaaacactcgaagtatcgacgcgagagaaaagagtcataaa 4173525  T
Q  211 gaatgtatgtaaaggatttgtcgaaccacctttatttttaatgca-ttgtattttacctttcctttaagttcctgcaatttaaacttaat 299  Q
    |||||||||||||||||||||||||| |  ||||| ||||||||| ||| ||||    ||| ||||||||| ||||||||||||||||||    
T  4173526 gaatgtatgtaaaggatttgtcgaactagttttatctttaatgcacttgcatttgtatttttctttaagtttctgcaatttaaacttaat 4173615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 248
Target Start/End: Original strand, 10649207 - 10649344
Alignment:
Q  112 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 210  Q
    ||||||||||  |||| |||||||  |||| | |||||||||||| |||| ||| ||| |||||| || |||||||||  |||||||||||||| |||||    
T  10649207 tgtataaatagtagttgtccatagggaaaatgagtcgcaaatcacttatagaaatttc-aaaacactcgaagtaccggcacgagagaaaagagttataaa 10649305  T
Q  211 gaatgtatgtaaa-ggatttgtcgaaccacctttatttt 248  Q
    |||||||||||||  |||||  | |||||||||||||||    
T  10649306 gaatgtatgtaaactgattttccaaaccacctttatttt 10649344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 280
Target Start/End: Complemental strand, 18046501 - 18046386
Alignment:
Q  163 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtat 261  Q
    ||||||||||||| |  ||||||||| |||||| |||||   |||| | ||||| ||||| | |||||||||||||||||||| |||||||||| || |     
T  18046501 aaattctaaaacaattgaagtaccggcgcgagaaaaaagg--catacataatgtgtgtaatatgatttgtcgaaccaccttta-ttttaatgcaatgcaa 18046405  T
Q  262 tttacctttcctttaagtt 280  Q
    ||||||||| |||||||||    
T  18046404 tttaccttttctttaagtt 18046386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 277
Target Start/End: Original strand, 9022558 - 9022642
Alignment:
Q  193 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaa 277  Q
    |||| ||||||||||| |||||||||||||   ||||| |||||||||||||| |||||||||| |  | ||||||||| ||||||    
T  9022558 agagtaaagagtcatacagaatgtatgtaatctgatttctcgaaccaccttta-ttttaatgcaataaaatttaccttttctttaa 9022642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 40 - 346
Target Start/End: Complemental strand, 28371341 - 28371034
Alignment:
Q  40 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtatctt-tgtataaataagagttttccataga-a 137  Q
    ||||||||||||| ||||||||||||||| ||||||||| ||| |||| |||||||||||||||| | |||| ||||||||||  ||||||||||||  |    
T  28371341 tgggagacaagcggttgtctacatggaaggagtgctgatcgtgagattagtttctttccaagttatt-tcttatgtataaatagtagttttccataggga 28371243  T
Q  138 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 237  Q
    ||| ||||||||||||||||||| |||||||||||||| || ||||||| | | ||| ||||| ||||||||||||||||||||||| ||||||||||||    
T  28371242 aaatgggtcgcaaatcacctatataaaattctaaaacactcgaagtaccagtgtgagtgaaaaaagtcataaagaatgtatgtaaagtatttgtcgaacc 28371143  T
Q  238 acctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaa 337  Q
     ||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||||||||    
T  28371142 tcctttatttttaatgcattgtattttactgttcctttaagtttctgcaatttaaacttaatgcatttactttgcttttaaaaccatttttctgtcgaaa 28371043  T
Q  338 gacgccaca 346  Q
    |||||||||    
T  28371042 gacgccaca 28371034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 40 - 341
Target Start/End: Complemental strand, 9218384 - 9218079
Alignment:
Q  40 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattc-gtttctttccaagttagtatctt-tgtataaataagagttttccataga- 136  Q
    ||||||||||||  ||||||||||||||| |||| ||||  |||||||  | || ||| || |||||| | || ||||||||||   |||||||||||      
T  9218384 tgggagacaagcagttgtctacatggaaggagtgttgatcatgggattgtgcttttttgca-gttagtttattatgtataaatagttgttttccataggg 9218286  T
Q  137 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 236  Q
    ||||||||||||||||||| |||||| |||||||||||| || ||||||||  ||||||||||||  ||||| |||||||||||||| ||||||||||||    
T  9218285 aaaacgggtcgcaaatcacatatacagaattctaaaacactcgaagtaccgacgcgagagaaaag--tcatacagaatgtatgtaaatgatttgtcgaac 9218188  T
Q  237 cacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaacc----ttttttctgt 332  Q
    || |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||  || ||||||||||||||| |    ||||||||||    
T  9218187 catctttatttttaatgcattgtattttatctttcctttaagtttctgcaatttaaacttaatgtttttactttgcttttaaaaacctttttttttctgt 9218088  T
Q  333 cgaaagacg 341  Q
    |||||||||    
T  9218087 cgaaagacg 9218079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 112 - 255
Target Start/End: Original strand, 23540207 - 23540351
Alignment:
Q  112 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 210  Q
    ||||||||||  ||||||||||||  ||||||||| |||||||||||||||| |||||||||| | ||||||||||||  | |||||||||| |||||||    
T  23540207 tgtataaatagtagttttccatagggaaaacgggttgcaaatcacctatacagaattctaaaatactcaaagtaccggctcaagagaaaagaatcataaa 23540306  T
Q  211 gaatgtatgtaaaggatttgtcgaaccacctttatttttaatgca 255  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||    
T  23540307 gaatgtatgtaaaagatttttcgaaccacctttatttttaatgca 23540351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 217 - 343
Target Start/End: Complemental strand, 10661095 - 10660970
Alignment:
Q  217 atgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgctttt 316  Q
    |||||||||||||||||||||||||||||||| |||||||||  ||| ||||||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  10661095 atgtaaaggatttgtcgaaccacctttattttgaatgcattgcgtttcacctttcctttaacttcctgcaatttaaacttaatgtctttactttgctttt 10660996  T
Q  317 aaaaccttttttctgtcgaaagacgcc 343  Q
    ||||||  ||||||||| |||||||||    
T  10660995 aaaacc-cttttctgtccaaagacgcc 10660970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 113 - 296
Target Start/End: Original strand, 9286315 - 9286498
Alignment:
Q  113 gtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaag 211  Q
    |||||||||  ||||||||||||  ||||||||||||||||||| |||| ||| ||||| |||| || ||||||||| ||||||||||| ||| ||| |     
T  9286315 gtataaatagtagttttccatagggaaaacgggtcgcaaatcacatatagaaa-ttctacaacactcgaagtaccggtgcgagagaaaatagttatacaa 9286413  T
Q  212 aatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 296  Q
    ||||||||||||||||||||||||| |||||||||||||||||| || | |||| ||||  |||||||| ||||| ||| |||||    
T  9286414 aatgtatgtaaaggatttgtcgaactacctttatttttaatgcaatgcaatttatcttttttttaagtttctgcacttttaactt 9286498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 112 - 258
Target Start/End: Complemental strand, 16600737 - 16600591
Alignment:
Q  112 tgtataaataagagttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 210  Q
    ||||||||||  |||||||||||| |||||||||| ||||||||| |||| ||| ||||| |||| || ||||||||| ||||||||| ||||| ||| |    
T  16600737 tgtataaatagtagttttccataggaaaaacgggttgcaaatcacttatagaaa-ttctacaacactcgaagtaccggcgcgagagaatagagttataca 16600639  T
Q  211 gaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattg 258  Q
     |||||| ||||||||||||||||||||| ||||||||||||||||||    
T  16600638 taatgtacgtaaaggatttgtcgaaccacatttatttttaatgcattg 16600591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 62 - 224
Target Start/End: Complemental strand, 10661911 - 10661748
Alignment:
Q  62 atggaagtagtgctgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcacctata 160  Q
    ||||||| |||| |||| |||||||| ||||||||||| |||  | ||| |||||||||||||||||||||| |  ||||| ||||||||||||||||||    
T  10661911 atggaaggagtgttgatcgtgggattagtttctttcca-gttgttttctatgtataaataagagttttccattgggaaaacaggtcgcaaatcacctata 10661813  T
Q  161 caaaattctaaaacat-tcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaag 224  Q
    || ||||||||||  | |||| ||||||| |||| | ||||||||||||||||||||||||||||    
T  10661812 cagaattctaaaaactctcaatgtaccggtgcgataaaaaagagtcataaagaatgtatgtaaag 10661748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 143 - 285
Target Start/End: Complemental strand, 13110345 - 13110204
Alignment:
Q  143 ggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctt 242  Q
    ||||||||||||| |||| ||| ||||| |||| || ||||||||| | ||||||||||||| ||| | ||| |||||| | ||||||| ||||||||||    
T  13110345 ggtcgcaaatcacttatagaaa-ttctacaacactcgaagtaccggcgagagagaaaagagttatacaaaatatatgtatatgatttgttgaaccacctt 13110247  T
Q  243 tatttttaatgcattgtattttacctttcctttaagttcctgc 285  Q
    ||||||||||||| || | |||| |||| ||||||||| ||||    
T  13110246 tatttttaatgcaatgcaatttatcttttctttaagtttctgc 13110204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 24577332 - 24577408
Alignment:
Q  112 tgtataaataagagttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccgg 188  Q
    ||||||||||  |||||| ||||| ||||||||| |||||||||||||||| |||||||||||| || |||||||||    
T  24577332 tgtataaatagtagtttttcataggaaaacgggtggcaaatcacctatacagaattctaaaacaatcgaagtaccgg 24577408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 26136195 - 26136242
Alignment:
Q  208 aaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgca 255  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  26136195 aaagaatgtatgtaaaggatttgtcggaccacctttatttttaatgca 26136242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 285
Target Start/End: Original strand, 18672125 - 18672261
Alignment:
Q  145 tcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccaccttta 244  Q
    ||||||||||| |||| ||| ||||| |||| || |||||| || | ||||||||||||| ||| | |||||||||||| ||||||| ||   |||||||    
T  18672125 tcgcaaatcacttatagaaa-ttctacaacactcgaagtactggcgagagagaaaagagttatacaaaatgtatgtaaatgatttgttga---accttta 18672220  T
Q  245 tttttaatgcattgtattttacctttcctttaagttcctgc 285  Q
    ||||||||||| |||| |||| |||| ||| ||||| ||||    
T  18672221 tttttaatgcaatgtaatttatcttttcttgaagtttctgc 18672261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 280
Target Start/End: Original strand, 22713661 - 22713751
Alignment:
Q  190 gcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagtt 280  Q
    |||| |||||||| | ||| ||||| ||||||||| ||||||| |||||||||||||||||||||| ||||  ||| |||| |||||||||    
T  22713661 gcgatagaaaagatttatatagaatatatgtaaagaatttgtcaaaccacctttatttttaatgcaatgtaaattatcttttctttaagtt 22713751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 280
Target Start/End: Complemental strand, 25095223 - 25095053
Alignment:
Q  112 tgtataaataagagttttccatag--aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataa 209  Q
    ||||||||||  |||||||||||   |||||| |  |||||||||| |||| ||| ||||||||||  | ||||||||| |||||| |||||||| |||     
T  25095223 tgtataaatagtagttttccatattaaaaaacagaccgcaaatcacttatagaaa-ttctaaaacacccgaagtaccggcgcgagataaaagagttatac 25095125  T
Q  210 agaatgtatgtaaagg-atttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagtt 280  Q
    |  |||||||||||   ||||||||||||||||||||| | |||||| || | |||| |||| |||||||||    
T  25095124 atgatgtatgtaaaattatttgtcgaaccacctttattataaatgcaatgcaatttatcttttctttaagtt 25095053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 280
Target Start/End: Original strand, 27123570 - 27123736
Alignment:
Q  112 tgtataaataagagttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 210  Q
    ||||||||||  |||||||||||| ||||| | |||||||||||  |||| ||| ||||| |||| |||  ||||||  ||||||||||||||| ||| |    
T  27123570 tgtataaatagtagttttccataggaaaaatgagtcgcaaatcaattatagaaa-ttctacaacactca--gtaccgatgcgagagaaaagagttataca 27123666  T
Q  211 gaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagtt 280  Q
     |||||||||||   ||||| |||||||||||||| |||||||||| || | |||| | ||||||||||||    
T  27123667 taatgtatgtaatctgatttatcgaaccaccttta-ttttaatgcaatgcaatttatcattcctttaagtt 27123736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 9006976 - 9006931
Alignment:
Q  235 accacctttatttttaatgcattgtattttacctttcctttaagtt 280  Q
    ||||||||||||||||||||| |  |||||||||||||||||||||    
T  9006976 accacctttatttttaatgcaatacattttacctttcctttaagtt 9006931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 15340931 - 15340983
Alignment:
Q  193 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 244  Q
    |||||||||||||||| ||||||||||||||  |||||||| |||||||||||    
T  15340931 agagaaaagagtcatacagaatgtatgtaaactgatttgtcaaaccaccttta 15340983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 15429996 - 15430048
Alignment:
Q  193 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 244  Q
    |||||||||||||||| ||||||||||||||  |||||||| |||||||||||    
T  15429996 agagaaaagagtcatacagaatgtatgtaaactgatttgtcaaaccaccttta 15430048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 15521300 - 15521352
Alignment:
Q  193 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 244  Q
    |||||||||||||||| ||||||||||||||  |||||||| |||||||||||    
T  15521300 agagaaaagagtcatacagaatgtatgtaaactgatttgtcaaaccaccttta 15521352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 24680835 - 24680890
Alignment:
Q  225 gatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagttc 281  Q
    ||||||||||||||| |||| |||||||||| |||| ||||||||| ||||||||||    
T  24680835 gatttgtcgaaccacattta-ttttaatgcaatgtaatttaccttttctttaagttc 24680890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 41652021 - 41652073
Alignment:
Q  193 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 244  Q
    |||||||||||||||| |||||||||||||   ||||||||||||||||||||    
T  41652021 agagaaaagagtcatacagaatgtatgtaatttgatttgtcgaaccaccttta 41652073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 23355539 - 23355487
Alignment:
Q  193 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 244  Q
    |||||||||||||||| | |||||||||||   ||||||||||||||||||||    
T  23355539 agagaaaagagtcatacaaaatgtatgtaatctgatttgtcgaaccaccttta 23355487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 32352269 - 32352217
Alignment:
Q  193 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 244  Q
    |||||||||||||||| | ||||||||||| | ||||||||||||||| ||||    
T  32352269 agagaaaagagtcatacaaaatgtatgtaatatgatttgtcgaaccactttta 32352217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 32368930 - 32368878
Alignment:
Q  193 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 244  Q
    |||||||||||||||| | ||||||||||| | ||||||||||||||| ||||    
T  32368930 agagaaaagagtcatacaaaatgtatgtaatatgatttgtcgaaccactttta 32368878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 178; Significance: 6e-96; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 40 - 348
Target Start/End: Complemental strand, 18929543 - 18929235
Alignment:
Q  40 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aa 138  Q
    ||||||||||||| ||||||||||||||| |||| |||| |||||||| |||||||||||||||| | ||| || |||||||  ||||||||| ||  ||    
T  18929543 tgggagacaagcggttgtctacatggaaggagtgttgatcgtgggattagtttctttccaagttattttctatgcataaatagtagttttccaaagggaa 18929444  T
Q  139 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 238  Q
    || |||| |||||||||||||| | |||||||||||| || ||||||||| | ||||||| | |||||||||||||||||||||| ||||| ||||||||    
T  18929443 aatgggttgcaaatcacctatatagaattctaaaacactcgaagtaccggcgtgagagaagatagtcataaagaatgtatgtaaaagatttatcgaacca 18929344  T
Q  239 cctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaag 338  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||     
T  18929343 cctttatttttaatgcattgtattttacctttcctttaagtttctgcaatttaaacttaatgcctttactttgcttttaaaacct-ttttatgtcgaaat 18929245  T
Q  339 acgccacagg 348  Q
    ||||||||||    
T  18929244 acgccacagg 18929235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 54 - 346
Target Start/End: Complemental strand, 26651133 - 26650839
Alignment:
Q  54 ttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtat-ctttgtataaataagagttttccataga-aaaacgggtcgcaaa 151  Q
    ||||||||||||||  |||||| || |||||||| ||||||||| | |||| | | || ||||||||||||||||||||||||  ||||| |||||||||    
T  26651133 ttgtctacatggaatgagtgctaatcgtgggattggtttctttcta-gttatttttctatgtataaataagagttttccatagggaaaacaggtcgcaaa 26651035  T
Q  152 tcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaa 251  Q
    ||||||||||| |||||||||||| || ||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  26651034 tcacctatacagaattctaaaacactcgaagcaccgacgcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttataa 26650935  T
Q  252 tgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaa-ccttttttctgtcgaaagacgccaca 346  Q
    | ||||||||||||||||||||||||||| ||||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  26650934 tccattgtattttacctttcctttaagtttctgcaatttaaacttcatgtctttactttgcttttaaaacccttttttctgtcgaaagaagccaca 26650839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 112 - 340
Target Start/End: Complemental strand, 17402958 - 17402729
Alignment:
Q  112 tgtataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 210  Q
    ||||||||||  |||| |||||| | ||||| |||||||||||||||||| | |||||||||||| || |||||||||  |||||||||| ||| |||||    
T  17402958 tgtataaatagtagttctccataaggaaaacaggtcgcaaatcacctatatagaattctaaaacactctaagtaccggcacgagagaaaaaagttataaa 17402859  T
Q  211 gaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaacttt 310  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||| |||||| |||||    
T  17402858 gaatgtatgtaaaggatttgtataaccacctttatttttaatgcattgtattttatatttcctttaagtttctgcaatttaaacttattgcctttacttt 17402759  T
Q  311 gcttttaaaaccttttttctgtcgaaagac 340  Q
    |||||||||||||||||| ||| |||||||    
T  17402758 gcttttaaaaccttttttttgttgaaagac 17402729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 112 - 327
Target Start/End: Original strand, 25520385 - 25520601
Alignment:
Q  112 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 210  Q
    ||||||||||| ||||||||||||  ||||||||| |||||||||||||||| |||| ||||||| || ||||  ||| ||||||||||||||||||| |    
T  25520385 tgtataaataatagttttccatagggaaaacgggttgcaaatcacctatacagaattataaaacactcgaagtgacggcgcgagagaaaagagtcataca 25520484  T
Q  211 gaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaacttt 310  Q
     |||||||||||||| ||||||||||| ||||||||||||||||| |||| |||| |||| |||||| || ||||||||| ||||||||||||| |||||    
T  25520485 taatgtatgtaaaggttttgtcgaacctcctttatttttaatgcaatgtagtttatcttttctttaactttctgcaattttaacttaatgcctttacttt 25520584  T
Q  311 gcttttaaaaccttttt 327  Q
    |||||||||||||||||    
T  25520585 gcttttaaaaccttttt 25520601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 112 - 296
Target Start/End: Original strand, 31404020 - 31404205
Alignment:
Q  112 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 210  Q
    ||||||||||  |||||||||||   |||| |||||||||||||| |||  ||| |||||||||| || ||||||||| ||||||||||||||| ||| |    
T  31404020 tgtataaatagtagttttccatattgaaaatgggtcgcaaatcacttattgaaa-ttctaaaacactcgaagtaccggcgcgagagaaaagagttataca 31404118  T
Q  211 gaatgtatgt-aaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 296  Q
    |||||||||| ||| |||||||||||||||||||  |||||||||| || | ||||||||| ||||||||| ||||| |||||||||    
T  31404119 gaatgtatgtaaaatgatttgtcgaaccaccttttattttaatgcaatgcaatttaccttttctttaagtttctgcattttaaactt 31404205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 40 - 175
Target Start/End: Complemental strand, 19879117 - 19878981
Alignment:
Q  40 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccata-gaaa 138  Q
    ||||||||||||||||||| |||||  || |||| |||| |||||||| |||||||||||| ||| | ||| |||| |||||  ||||||||||| ||||    
T  19879117 tgggagacaagcgtttgtcaacatgagaggagtgttgatcgtgggattagtttctttccaacttattttctatgtaaaaatagtagttttccataggaaa 19879018  T
Q  139 aacgggtcgcaaatcacctatacaaaattctaaaaca 175  Q
    |||||||||||||||||||||||| ||||||||||||    
T  19879017 aacgggtcgcaaatcacctatacagaattctaaaaca 19878981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 40 - 296
Target Start/End: Complemental strand, 24544126 - 24543870
Alignment:
Q  40 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtat-ctttgtataaataagagttttccatag-aa 137  Q
    ||||||||||||| | || |||||||||| ||||||||| ||||  || | || |||||| |||| | | || ||||||||||  |||||||||||| ||    
T  24544126 tgggagacaagcggtagtttacatggaagaagtgctgatcgtggagttaggttttttcca-gttattttactatgtataaatagtagttttccataggaa 24544028  T
Q  138 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 237  Q
    ||||||||| |||||||| |||| ||| ||  | |||| || ||||| ||| ||||||||||||| | ||| | ||| |||||||||||||| | |||||    
T  24544027 aaacgggtcacaaatcacttatagaaatttg-acaacactcgaagtatcggcgcgagagaaaagatttatacataatatatgtaaaggatttctggaacc 24543929  T
Q  238 acctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 296  Q
    |||||||||||||||||| || | ||||  ||||||  |||||  |||||||| |||||    
T  24543928 acctttatttttaatgcaatgcaatttatttttcctacaagtttttgcaattttaactt 24543870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 248
Target Start/End: Original strand, 29891239 - 29891376
Alignment:
Q  112 tgtataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 210  Q
    ||||||||||  |||| |||||| ||||||||||||||| ||||| |||| ||| || ||||||| |||||||| ||| ||||||||||||| | ||| |    
T  29891239 tgtataaatagtagttgtccatatgaaaaacgggtcgcagatcacttatagaaa-ttataaaacactcaaagtatcggcgcgagagaaaagatttataca 29891337  T
Q  211 gaatgtatgta-aaggatttgtcgaaccacctttatttt 248  Q
     |||||||||| |  ||| ||||||||||| ||||||||    
T  29891338 aaatgtatgtacactgatatgtcgaaccacatttatttt 29891376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 137 - 280
Target Start/End: Original strand, 20478255 - 20478396
Alignment:
Q  137 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaa 235  Q
    |||| |||||||||||||  |||||| ||||||| |||| ||||| |||||| ||||| |||| |||| ||| ||||||||||||||  ||||||| | |    
T  20478255 aaaatgggtcgcaaatca--tatacataattctacaacactcaaactaccggcgcgagggaaacgagttatacagaatgtatgtaaactgatttgtag-a 20478351  T
Q  236 ccacctttatttttaatgcattgtattttacctttcctttaagtt 280  Q
    ||||||||| |||||||| |||| ||||    |||||||||||||    
T  20478352 ccacctttaattttaatgaattgcatttatgttttcctttaagtt 20478396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 244
Target Start/End: Original strand, 28760593 - 28760724
Alignment:
Q  112 tgtataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggag-cgagagaaaagagtcataa 209  Q
    |||||||||||||||||| |||| |||||||  | |||||||||  ||||  ||||||||  ||  || ||||||||| | | ||||||||||||||||     
T  28760593 tgtataaataagagtttttcatatgaaaaacaagacgcaaatcatttata--aaattctagcac--tcgaagtaccggcgtctagagaaaagagtcatat 28760688  T
Q  210 agaatgtatgtaaa-ggatttgtcgaaccaccttta 244  Q
    ||||||||||||||  ||||||||||||||||||||    
T  28760689 agaatgtatgtaaactgatttgtcgaaccaccttta 28760724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 280
Target Start/End: Original strand, 17162015 - 17162100
Alignment:
Q  195 agaaaagagtcataaagaatgtatgtaaag-gatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagtt 280  Q
    |||||||| ||||| |||||||||||||   |||||||||| |||||||||| || |||||| || | |||||||||||||||||||    
T  17162015 agaaaagaatcatacagaatgtatgtaatctgatttgtcgagccacctttatatt-aatgcaatgcaatttacctttcctttaagtt 17162100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 280
Target Start/End: Original strand, 15438056 - 15438143
Alignment:
Q  193 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagtt 280  Q
    |||||||||||||||| |||||||||||||   |||||||||||||||| |||   |||||| | || | |||||||||||||||||||    
T  15438056 agagaaaagagtcatacagaatgtatgtaatttgatttgtcgaaccaccatta-cattaatgtaatgcaatttacctttcctttaagtt 15438143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 296
Target Start/End: Complemental strand, 17636791 - 17636690
Alignment:
Q  195 agaaaagagtcataaagaatgtatgtaaag-gatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaa 293  Q
    |||||||||||||| | |||||||||||   ||||||||||||||||||||   ||||||||  | | ||||||||| ||||||||| ||||  ||||||    
T  17636791 agaaaagagtcatacaaaatgtatgtaatctgatttgtcgaaccaccttta-cattaatgcaaggcaatttaccttttctttaagtttctgcgttttaaa 17636693  T
Q  294 ctt 296  Q
    |||    
T  17636692 ctt 17636690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 53 - 320
Target Start/End: Original strand, 19217911 - 19218177
Alignment:
Q  53 tttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaa 151  Q
    |||||||||||| ||| ||||||| | |||||||| ||||||||||| |||| | | | |||||||||||  |||||||||||  |||||||||||||||    
T  19217911 tttgtctacatgaaaggagtgctggtcgtgggattagtttctttcca-gttattttttatgtataaataactgttttccatagggaaaacgggtcgcaaa 19218009  T
Q  152 tcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaa 251  Q
    ||||||||||||| |||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19218010 tcacctatacaaa-ttctaaaacactcaaagtaccggcgcgagagaaaagagccataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaa 19218108  T
Q  252 tgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaa 320  Q
    ||||||||||||||| ||||||||||||| || |||||||||||||||||||| |||||||||||||||    
T  19218109 tgcattgtattttacatttcctttaagtttctacaatttaaacttaatgcctttactttgcttttaaaa 19218177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 48 - 306
Target Start/End: Original strand, 20064388 - 20064653
Alignment:
Q  48 aagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtc 146  Q
    ||||| |||||||||||||||  ||||||||||||||||| |||||||||||  ||| |  || ||||||||||| ||||||||||||  ||||||||||    
T  20064388 aagcggttgtctacatggaaggtgtgctgattgtgggattagtttctttccac-ttatttactatgtataaataatagttttccatagggaaaacgggtc 20064486  T
Q  147 gcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatt 246  Q
    ||||||| |||||||| |||||||||||| | |||||||||| || |||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||    
T  20064487 gcaaatcgcctatacagaattctaaaacactgaaagtaccggtgcaagagaaaagagttataaaaaatgtatgtaaatgatttgttgaaccacctttatt 20064586  T
Q  247 tttaatgca-------ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaa 306  Q
    |||||||||       || ||||||  |||| ||||||||| |||||||||||||||||||| ||||    
T  20064587 tttaatgcacttgcatttatattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 20064653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 40 - 306
Target Start/End: Complemental strand, 20061075 - 20060802
Alignment:
Q  40 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatagaaaa 139  Q
    ||||||||||||| |||| |||||| ||  |||| |||| |||||||| ||||||||| || ||| |  || ||||||||| | ||||||||||||   |    
T  20061075 tgggagacaagcgattgtgtacatgtaatgagtgatgatcgtgggattagtttctttc-aacttacttcctatgtataaatgatagttttccatagggta 20060977  T
Q  140 -acgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 238  Q
     |||||| ||||||| |||||||| ||||||||||||||  || |||||| || |||||||||||||||||| |||||||||||||||||||||||||||    
T  20060976 gacgggttgcaaatcgcctatacagaattctaaaacatttgaactaccggcgcaagagaaaagagtcataaacaatgtatgtaaaggatttgtcgaacca 20060877  T
Q  239 cctttatttttaatgca-------ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaa 306  Q
    |||||||||||||||||       |||||||||  |||| ||||||||| |||||||||||||||||||| ||||    
T  20060876 cctttatttttaatgcacttgcatttgtattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 20060802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 40 - 255
Target Start/End: Complemental strand, 20713443 - 20713228
Alignment:
Q  40 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aa 138  Q
    ||||||||||||| ||||||||||||||| ||||||||| |||||||| ||||||||| || ||| |  || ||||||||||| ||||||||||||  ||    
T  20713443 tgggagacaagcggttgtctacatggaaggagtgctgatcgtgggattagtttctttc-aacttatttcctatgtataaataatagttttccatagggaa 20713345  T
Q  139 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 238  Q
    ||||||||||||||| | |||||| |||||||||||| || || |||||  || ||||||||||||||||||||||||||||||  ||||||| |||| |    
T  20713344 aacgggtcgcaaatcgcatatacagaattctaaaacactcgaaataccgatgcaagagaaaagagtcataaagaatgtatgtaacagatttgttgaacaa 20713245  T
Q  239 cctttatttttaatgca 255  Q
    |||||||||||||||||    
T  20713244 cctttatttttaatgca 20713228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 39 - 255
Target Start/End: Original strand, 23210024 - 23210240
Alignment:
Q  39 atgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-a 137  Q
    |||||||||||||| ||||||| ||||||| |||| |||| |||||||| |||||||||||  ||| |  || ||||||||||| ||||| ||||||  |    
T  23210024 atgggagacaagcggttgtctaaatggaaggagtgttgatcgtgggattagtttctttccac-ttatttcctatgtataaataatagtttcccataggga 23210122  T
Q  138 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 237  Q
    |||| |||||||||||   |||||| |||||||||||| || ||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||    
T  23210123 aaacaggtcgcaaatcgtatatacataattctaaaacactcgaagtaccggcgcaagagaaaagagtcttaaagaatgtatgtaaaggatttgtcgaacc 23210222  T
Q  238 acctttatttttaatgca 255  Q
    || |||||||||||||||    
T  23210223 acttttatttttaatgca 23210240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 40 - 306
Target Start/End: Original strand, 20058550 - 20058824
Alignment:
Q  40 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccata-gaaa 138  Q
    ||||||||||||| |||| | |||||||| ||||||||| |||||||| |||| ||| | | ||| |  || ||||||||| | ||||||||||| |  |    
T  20058550 tgggagacaagcggttgtttgcatggaaggagtgctgatcgtgggattagttttttttccacttacttcctatgtataaatgatagttttccataaggta 20058649  T
Q  139 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 238  Q
     || ||| ||||||| ||||| |||||||||||||||||||||||||  | || |||||||||||||||||||||||||||||||| |||||||||||||    
T  20058650 gacaggttgcaaatcgcctatgcaaaattctaaaacattcaaagtactagcgcaagagaaaagagtcataaagaatgtatgtaaagaatttgtcgaacca 20058749  T
Q  239 cctttatttttaatgca-------ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaa 306  Q
    |||||||||||||||||       |||||||||   |||  |||||||| |||||||||||||||||||| ||||    
T  20058750 cctttatttttaatgcaattgcatttgtattttttattttatttaagtttctgcaatttaaacttaatgcattaa 20058824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 42 - 255
Target Start/End: Complemental strand, 25951528 - 25951315
Alignment:
Q  42 ggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaa 140  Q
    ||||||||||| ||||||||||||||| |||| |||| ||| |||| |||||||| | | ||| |  |  ||||||||||| ||||||||||||  ||||    
T  25951528 ggagacaagcggttgtctacatggaaggagtgttgatcgtgagattagtttcttttccacttatttccgatgtataaataatagttttccataggtaaaa 25951429  T
Q  141 cgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacc 240  Q
    | ||||| ||||| | |||||| |||||||||||| ||||||||||| |  |||||||||||||||||||||||||||||||| ||||||||||||||      
T  25951428 caggtcgtaaatcgcttatacataattctaaaacactcaaagtaccg-acagagagaaaagagtcataaagaatgtatgtaaaagatttgtcgaaccaat 25951330  T
Q  241 tttatttttaatgca 255  Q
    |||| | ||||||||    
T  25951329 tttactcttaatgca 25951315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 112 - 224
Target Start/End: Original strand, 23379361 - 23379474
Alignment:
Q  112 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 210  Q
    ||||||||||  ||||||||||||  ||||||||||||||||||||||| || |||||||||||| || ||||||  | |||||||||||||||||||||    
T  23379361 tgtataaatagtagttttccatagggaaaacgggtcgcaaatcacctatgcagaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaa 23379460  T
Q  211 gaatgtatgtaaag 224  Q
    ||||||||||||||    
T  23379461 gaatgtatgtaaag 23379474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 40 - 280
Target Start/End: Original strand, 17167172 - 17167417
Alignment:
Q  40 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgg-----gattcgtttctttccaagttagtat-ctttgtataaataagagttttccat 133  Q
    ||||||||||| | ||||||||||||||| |||| |||||||||     ||||  ||| |||||| |||| | | || ||||||||||  ||||||||||    
T  17167172 tgggagacaagtggttgtctacatggaagaagtgttgattgtggagttagatttttttttttcca-gttattttgctatgtataaatagtagttttccat 17167270  T
Q  134 aga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtc 232  Q
     |  |||||||||| |||||||| |||| ||| ||||| ||||    ||||||| | ||||||||||||||| ||| | |||||||||||||||||||||    
T  17167271 ggggaaaacgggtcccaaatcacttatagaaa-ttctacaacaccagaagtaccagcgcgagagaaaagagtaatacaaaatgtatgtaaaggatttgtc 17167369  T
Q  233 gaaccacctttatttttaatgcattgtattttacctttcctttaagtt 280  Q
    ||||||||||||||||||||| | || | |||| |||| |||||||||    
T  17167370 gaaccacctttatttttaatgtaatgcaatttatcttttctttaagtt 17167417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 190 - 280
Target Start/End: Original strand, 19924022 - 19924112
Alignment:
Q  190 gcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagtt 280  Q
    ||||||||||||||| ||| ||||||||| |||| ||||||||||||||||||||||||||||||| |||| |||| |||| |||||||||    
T  19924022 gcgagagaaaagagttatacagaatgtatataaaagatttgtcgaaccacctttatttttaatgcaatgtaatttatcttttctttaagtt 19924112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 163 - 296
Target Start/End: Complemental strand, 24878489 - 24878356
Alignment:
Q  163 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtatt 262  Q
    |||||||| |||| || || |||||  ||||||||||||||| |||   ||| ||||||||||||||||| |||||||||||||||||||||| || | |    
T  24878489 aaattctacaacactcgaattaccgacgcgagagaaaagagttatacgtaatttatgtaaaggatttgtcaaaccacctttatttttaatgcaatgcaat 24878390  T
Q  263 ttacctttcctttaagttcctgcaatttaaactt 296  Q
    ||| |||| ||||||||| ||||  |||||||||    
T  24878389 ttatcttttctttaagtttctgcgttttaaactt 24878356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 190 - 280
Target Start/End: Original strand, 19926749 - 19926839
Alignment:
Q  190 gcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagtt 280  Q
    ||||||||||| ||| ||| ||||||||  |||| ||||||||||||||||||||||||||||||| || | |||| |||| |||||||||    
T  19926749 gcgagagaaaatagttatacagaatgtaaataaaagatttgtcgaaccacctttatttttaatgcaatgcaatttatcttttctttaagtt 19926839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 142 - 280
Target Start/End: Complemental strand, 17987619 - 17987482
Alignment:
Q  142 gggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggag-cgagagaaaagagtcataaagaatgtatgtaaag-gatttgtcgaaccac 239  Q
    |||||||||||||  |||||| |||||||||||| ||||| |||||  | | || |||| |||| ||| |||||||||||| |  ||||||| || ||||    
T  17987619 gggtcgcaaatca--tatacagaattctaaaacactcaaactaccgacgtctagggaaacgagttatacagaatgtatgtagactgatttgtaga-ccac 17987523  T
Q  240 ctttatttttaatgcattgtattttacctttcctttaagtt 280  Q
    |||||||||||||||| || |||||||||||||||| ||||    
T  17987522 ctttatttttaatgcaatgcattttacctttcctttgagtt 17987482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 171
Target Start/End: Complemental strand, 21165399 - 21165282
Alignment:
Q  54 ttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtatctt-tgtataaataagagttttccataga-aaaacgggtcgcaaa 151  Q
    |||||||||||| ||  |||||||| ||| |||| |||||||||||  ||| | |||| ||||||||||| ||||||||||||  |||||||||||||||    
T  21165399 ttgtctacatgggaggcgtgctgatcgtgcgattagtttctttccac-ttatt-tcttatgtataaataatagttttccatagggaaaacgggtcgcaaa 21165302  T
Q  152 tcacctatacaaaattctaa 171  Q
    || |||||| | ||||||||    
T  21165301 tcgcctatatagaattctaa 21165282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 344
Target Start/End: Complemental strand, 24878319 - 24878288
Alignment:
Q  313 ttttaaaaccttttttctgtcgaaagacgcca 344  Q
    ||||||||||||||||||||||||||||||||    
T  24878319 ttttaaaaccttttttctgtcgaaagacgcca 24878288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 31533052 - 31533102
Alignment:
Q  195 agaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 244  Q
    |||||||||||||| |||||||||||||   ||||||||||||||||||||    
T  31533052 agaaaagagtcatagagaatgtatgtaatctgatttgtcgaaccaccttta 31533102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 300
Target Start/End: Complemental strand, 25951292 - 25951260
Alignment:
Q  268 tttcctttaagttcctgcaatttaaacttaatg 300  Q
    ||||||||||||| |||||||||||||||||||    
T  25951292 tttcctttaagtttctgcaatttaaacttaatg 25951260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 40 - 346
Target Start/End: Complemental strand, 15687166 - 15686859
Alignment:
Q  40 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatagaa-a 138  Q
    ||||||||||||| ||| |||||| |||| |||| |||| |||||||| ||||||||||| |||| | ||| ||||||||||||||||||||||||   |    
T  15687166 tgggagacaagcggttgcctacatagaaggagtgatgatcgtgggattagtttctttcca-gttattttctatgtataaataagagttttccatagtgga 15687068  T
Q  139 aacgggtcgcaaatcacctatacaaaattctaaaac-attcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 237  Q
    |||| ||||||||||||||||||  ||||||||||  | || ||||||||  |||||||||||||||| ||||||||||||| || |||||| | | |||    
T  15687067 aacgagtcgcaaatcacctatactgaattctaaaaatactcgaagtaccgacgcgagagaaaagagtcttaaagaatgtatgaaatggatttttaggacc 15686968  T
Q  238 acctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaa 337  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||    
T  15686967 acctttatttttaatgcattgtattttacctttgctttaagtttctgcaatttaaacttaatgcctttactttgcttttaaaaccctttttctatcgaaa 15686868  T
Q  338 gacgccaca 346  Q
     ||||||||    
T  15686867 cacgccaca 15686859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 112 - 339
Target Start/End: Original strand, 24699049 - 24699275
Alignment:
Q  112 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 210  Q
    ||||||||||| ||||||||||||  ||||||||||||||||| |||||||| |||||||||||| || ||||||||| ||||||||||||| |||  ||    
T  24699049 tgtataaataatagttttccatagggaaaacgggtcgcaaatcccctatacagaattctaaaacactcgaagtaccggcgcgagagaaaagaatca--aa 24699146  T
Q  211 gaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaacttt 310  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||    
T  24699147 gaatgtatttaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagtttatgcaatttaaacttaatgcctttacttt 24699246  T
Q  311 gcttttaaaaccttttttctgtcgaaaga 339  Q
    |||| | ||||| ||||||||||||||||    
T  24699247 gcttatgaaaccctttttctgtcgaaaga 24699275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 112 - 340
Target Start/End: Complemental strand, 26011067 - 26010836
Alignment:
Q  112 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 210  Q
    ||||||||||  ||||||||||||  ||||| |||||||||||||||||||  |||||||||||| || ||||||||| ||||||||| |||||||||||    
T  26011067 tgtataaatagtagttttccatagggaaaacaggtcgcaaatcacctataccgaattctaaaacactcgaagtaccggcgcgagagaatagagtcataaa 26010968  T
Q  211 gaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagttcctgcaa---tttaaacttaatgccttaac 307  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||    |||||||||||||||| ||    
T  26010967 gaatgtatgtaaatgatttgtcgaaccacctttatttttaaagcattgtattttatctttcctttaagtttctgcaagttattaaacttaatgcctttac 26010868  T
Q  308 tttgcttttaaaaccttttttctgtcgaaagac 340  Q
    ||||||||||||| |  ||||||||||||||||    
T  26010867 tttgcttttaaaaac-cttttctgtcgaaagac 26010836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 112 - 327
Target Start/End: Original strand, 13428700 - 13428914
Alignment:
Q  112 tgtataaataagagttttccatagaa-aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 210  Q
    ||||||||||  ||||||||||||   ||||  ||||||||||||||||| ||  |||||||||| || ||||||||  | ||||||||||||| |||||    
T  13428700 tgtataaatagtagttttccataggggaaacatgtcgcaaatcacctatataa--ttctaaaacactcgaagtaccgacgtgagagaaaagagtaataaa 13428797  T
Q  211 gaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaacttt 310  Q
    ||||||||||||||||||||| ||||||| |||||| |||||||||||||||||| ||||||||||| || |||||||||||||||||||| || |||||    
T  13428798 gaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattttatctttcctttaaatttctgcaatttaaacttaatgcatttacttt 13428897  T
Q  311 gcttttaaaaccttttt 327  Q
    |||||||||||| ||||    
T  13428898 gcttttaaaaccctttt 13428914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 39 - 344
Target Start/End: Original strand, 4765605 - 4765916
Alignment:
Q  39 atgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatag-aa 137  Q
    |||||||||||||  ||||||||||||||| ||||  ||| |||||||| ||   | | | ||||| | ||| ||||||||||  |||||||||||| ||    
T  4765605 atgggagacaagcagttgtctacatggaagaagtgtagatcgtgggatt-gtacttgttctagttattttctatgtataaatagtagttttccataggaa 4765703  T
Q  138 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaat----gtatgtaaaggatttgtcg 233  Q
    ||| ||||||||||||||||||| |  ||||||||||| |  | ||||  | |||||||||||||||||||||||||    ||||||||| |||||||||    
T  4765704 aaatgggtcgcaaatcacctatatagtattctaaaacacttgatgtactagcgcgagagaaaagagtcataaagaattaatgtatgtaaatgatttgtcg 4765803  T
Q  234 aaccacctttatttttaatgcattgtattttacctttcctttaagttcctgcaa-tttaaacttaatgccttaactttgctttt-aaaaccttttttctg 331  Q
    ||||||||||| ||||||||||||||| ||||  |||||||||||||  ||||| ||||||||||||||||| ||||||||||| |||||| ||||  ||    
T  4765804 aaccacctttacttttaatgcattgtactttatttttcctttaagtttatgcaattttaaacttaatgcctttactttgcttttaaaaacccttttcatg 4765903  T
Q  332 tcgaaagacgcca 344  Q
    |||||||||||||    
T  4765904 tcgaaagacgcca 4765916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 112 - 319
Target Start/End: Complemental strand, 4769949 - 4769742
Alignment:
Q  112 tgtataaataagagttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaag 211  Q
    ||||||||||  ||||||||||||  ||| | ||| ||||||| ||||||| |||||||||||| || || |||| | || |||||||||||||||||||    
T  4769949 tgtataaatagtagttttccatagggaaaagcgtcccaaatcatctatacataattctaaaacactcgaaataccagcgcaagagaaaagagtcataaag 4769850  T
Q  212 aatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttg 311  Q
    ||||||||||| | |||| ||||||||||||||||| |||||||||||||||   ||||||||||||||  || ||||||||||||||||||| ||||||    
T  4769849 aatgtatgtaacgaatttttcgaaccacctttatttctaatgcattgtatttattctttcctttaagtttatgaaatttaaacttaatgcctttactttg 4769750  T
Q  312 cttttaaa 319  Q
    ||||||||    
T  4769749 cttttaaa 4769742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 40 - 255
Target Start/End: Complemental strand, 7149005 - 7148790
Alignment:
Q  40 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatagaaaa 139  Q
    ||||||||||| | ||||||||||||||| |||| |||| |||||||| |||||||||||| ||| |  || ||||||||||  |||||||||||| |||    
T  7149005 tgggagacaagtggttgtctacatggaaggagtgttgatcgtgggattagtttctttccaa-ttatttcctatgtataaatagtagttttccataggaaa 7148907  T
Q  140 ac-gggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 238  Q
    || ||||| |||||  |||||||| |||||||||| | |  ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7148906 accgggtcacaaattgcctatacagaattctaaaatagttgaagtaccgacgcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 7148807  T
Q  239 cctttatttttaatgca 255  Q
    | |||| ||||||||||    
T  7148806 cttttacttttaatgca 7148790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 112 - 346
Target Start/End: Original strand, 4832504 - 4832740
Alignment:
Q  112 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 210  Q
    ||||||||||  ||||||||||||  |||| || |||||||||||||||||| |||||||||||| || ||| |  || | ||||||||||||||| |||    
T  4832504 tgtataaatagtagttttccatagggaaaatggatcgcaaatcacctatacagaattctaaaacactcgaagcattggtgtgagagaaaagagtcacaaa 4832603  T
Q  211 gaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaacttt 310  Q
    |||| ||| |||||||| ||  | ||||||||||| |||||||||||||||||||  |||||||| ||||  |||||||||||||||||| ||| || ||    
T  4832604 gaatatatttaaaggatctgctggaccacctttatatttaatgcattgtattttaattttcctttgagtttatgcaatttaaacttaatgtctttacctt 4832703  T
Q  311 gcttttaaaa-ccttttttctgtcgaaagacgccaca 346  Q
    ||||| |||| |||||||||| |||||||||| ||||    
T  4832704 gctttaaaaacccttttttctttcgaaagacgtcaca 4832740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 40 - 263
Target Start/End: Original strand, 9033398 - 9033622
Alignment:
Q  40 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtatctt-tgtataaataagagttttccatagaaa 138  Q
    ||||| ||||||| ||||||||||||| | |||| |||| ||| |||| |||||||||||  ||| | |||| ||||||||||| |||||||||||| ||    
T  9033398 tgggatacaagcggttgtctacatggagggagtgttgatcgtgtgattagtttctttccac-ttatt-tcttatgtataaataatagttttccataggaa 9033495  T
Q  139 aacgggtcgcaaatcacctatacaaaattct-aaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 237  Q
    ||||||||||| ||| |||||||| |||| | |||||| || ||||| ||| || ||||||||  |||| ||||||||||||||||||||||||| ||||    
T  9033496 aacgggtcgcatatcgcctatacagaattttcaaaacactcgaagtatcggcgcaagagaaaatggtcacaaagaatgtatgtaaaggatttgtcaaacc 9033595  T
Q  238 acctttatttttaatgca-ttgtattt 263  Q
    |||||||||||||||||| ||||||||    
T  9033596 acctttatttttaatgcacttgtattt 9033622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 40 - 252
Target Start/End: Original strand, 29614512 - 29614724
Alignment:
Q  40 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aa 138  Q
    |||| |||||||  ||||||||||||||| |||||||||||||||||| |||||||| ||  ||| |  || |||||||| || ||||||||||||  ||    
T  29614512 tgggcgacaagcagttgtctacatggaaggagtgctgattgtgggattagtttcttttcat-ttatttcctatgtataaa-aatagttttccatagggaa 29614609  T
Q  139 aacgggtcgcaaatcacctatacaaaattctaa-aacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 237  Q
    || |||||||||||| |||||| | |||||||| |||| || ||||||||   | |||||||||||||||||| ||||||||||||||||||||||||||    
T  29614610 aatgggtcgcaaatcgcctatatataattctaagaacactcgaagtaccgacacaagagaaaagagtcataaataatgtatgtaaaggatttgtcgaacc 29614709  T
Q  238 acctttatttttaat 252  Q
    |||||||||||||||    
T  29614710 acctttatttttaat 29614724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 112 - 290
Target Start/End: Complemental strand, 23378668 - 23378488
Alignment:
Q  112 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 210  Q
    ||||||||||  |||||| |||||  |||| | ||| |||||||| ||||||||||||||||| | || ||||| ||| ||||||||||||||||||| |    
T  23378668 tgtataaatagtagttttacatagggaaaatgtgtcacaaatcacttatacaaaattctaaaatactcgaagtatcggcgcgagagaaaagagtcataca 23378569  T
Q  211 gaatgtatgtaaaggatttg-tcgaaccacctttatttttaatgcattgtattttacctttcctttaagttcctgcaattt 290  Q
     ||||||||||||||||||| | ||||||||||||||||||||||| || | |||| |||||||||||||| || ||||||    
T  23378568 taatgtatgtaaaggatttgtttgaaccacctttatttttaatgcaatgcaatttatctttcctttaagtttctacaattt 23378488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 115 - 255
Target Start/End: Original strand, 16242928 - 16243069
Alignment:
Q  115 ataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaa 213  Q
    |||||||  ||||||||||||  |||||| |||| ||||  ||| ||||  ||||||||||| || |||||||   ||||||||||||||||||||||||    
T  16242928 ataaatagtagttttccatagggaaaacgagtcgtaaatttcctctacaggattctaaaacactcgaagtaccaacgcgagagaaaagagtcataaagaa 16243027  T
Q  214 tgtatgtaaaggatttgtcgaaccacctttatttttaatgca 255  Q
    ||||||||||| |||||||||||||| |||||||||||||||    
T  16243028 tgtatgtaaagcatttgtcgaaccacttttatttttaatgca 16243069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 163 - 286
Target Start/End: Original strand, 27304424 - 27304547
Alignment:
Q  163 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtatt 262  Q
    |||||||| |||| |||||||| |||  |||||||||||| | ||| | |||||||||| || ||||||| |||||| ||||||||||||||| || | |    
T  27304424 aaattctacaacactcaaagtatcggctcgagagaaaagaattatacaaaatgtatgtatagaatttgtcaaaccacttttatttttaatgcaatgcaat 27304523  T
Q  263 ttacctttcctttaagttcctgca 286  Q
    |||  ||| ||||||||| |||||    
T  27304524 ttatattttctttaagtttctgca 27304547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 13409879 - 13409834
Alignment:
Q  235 accacctttatttttaatgcattgtattttacctttcctttaagtt 280  Q
    ||||||||||||||||||||| || |||||||||||||||||||||    
T  13409879 accacctttatttttaatgcaatgcattttacctttcctttaagtt 13409834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 286
Target Start/End: Original strand, 8737234 - 8737308
Alignment:
Q  212 aatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagttcctgca 286  Q
    |||| ||||||||||||||| |||||||||||||||| |||||| || | |||| |||| |||||| || |||||    
T  8737234 aatgcatgtaaaggatttgttgaaccacctttattttaaatgcaatgcaatttagcttttctttaactttctgca 8737308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 286
Target Start/End: Original strand, 9089472 - 9089546
Alignment:
Q  212 aatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagttcctgca 286  Q
    |||| ||||||||||||||| |||||||||||||||| |||||| || | |||| |||| |||||| || |||||    
T  9089472 aatgcatgtaaaggatttgttgaaccacctttattttaaatgcaatgcaatttagcttttctttaactttctgca 9089546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 48896127 - 48896075
Alignment:
Q  193 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 244  Q
    |||||||||||||||| | ||||||||||||  | ||||||||||||||||||    
T  48896127 agagaaaagagtcatacataatgtatgtaaactggtttgtcgaaccaccttta 48896075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 5e-78; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 115 - 346
Target Start/End: Original strand, 22397545 - 22397777
Alignment:
Q  115 ataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaa-cattcaaagtaccggagcgagagaaaagagtcataaaga 212  Q
    ||||||||||||||||| |||  |||||||||||||||||||||||||| |||||||||| || || ||||||||| ||||||||||| |||||||||||    
T  22397545 ataaataagagttttccgtagggaaaacgggtcgcaaatcacctatacagaattctaaaaacactcgaagtaccggcgcgagagaaaatagtcataaaga 22397644  T
Q  213 atgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcc-tttaagttcctgcaatttaaacttaatgccttaactttg 311  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    |||||     
T  22397645 atgtatgtaaaggatttgtcgaacaacctttatttttaatgcattgtattttacctttccttttaagtttctgcaatttaaacttaatgc--agactttt 22397742  T
Q  312 cttttaaaaccttttttctgtcgaaagacgccaca 346  Q
    ||||||||||||||||| |||||||||||||||||    
T  22397743 cttttaaaaccttttttttgtcgaaagacgccaca 22397777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 40 - 255
Target Start/End: Complemental strand, 16177519 - 16177304
Alignment:
Q  40 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccata-gaaa 138  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||| | ||| | ||| ||||||||||  ||||||||||| | ||    
T  16177519 tgggagacaagcggttgtctacatggaaggagtgctgattgtgggattagtttctttcc-acttattttctatgtataaatattagttttccatatggaa 16177421  T
Q  139 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 238  Q
    |||||||||||||| |||||||||||||||||||||| || |||||||      ||||||||||||||||||||||||||||||||||||| ||||||||    
T  16177420 aacgggtcgcaaataacctatacaaaattctaaaacactcgaagtaccaacataagagaaaagagtcataaagaatgtatgtaaaggatttttcgaacca 16177321  T
Q  239 cctttatttttaatgca 255  Q
    | |||||||||||||||    
T  16177320 catttatttttaatgca 16177304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 39 - 251
Target Start/End: Complemental strand, 15830238 - 15830026
Alignment:
Q  39 atgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccata-gaa 137  Q
    ||||||||||| |  ||||||||||||||  |||||| ||| ||||||| |||||||||||  ||| | ||| ||||||||||| |||||| |||| | |    
T  15830238 atgggagacaaacagttgtctacatggaaagagtgctaattatgggattagtttctttccac-ttattttctatgtataaataatagttttgcataagga 15830140  T
Q  138 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 237  Q
    |||||||||||||||| |||||||| |||||||||||| |||||||| | | | ||||||||||||||||||| |||||||||||| ||||||||||| |    
T  15830139 aaacgggtcgcaaatcgcctatacagaattctaaaacactcaaagtatcagtgtgagagaaaagagtcataaataatgtatgtaaaagatttgtcgaatc 15830040  T
Q  238 acctttatttttaa 251  Q
    || |||||||||||    
T  15830039 acttttatttttaa 15830026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 137 - 337
Target Start/End: Complemental strand, 17524998 - 17524797
Alignment:
Q  137 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 236  Q
    ||||| |||||||||||||||||||| |||||||||||| || |||| | || | ||||||||||||||||||||||||||| ||||||| |||||| ||    
T  17524998 aaaacaggtcgcaaatcacctatacataattctaaaacactcgaagtgctggcgtgagagaaaagagtcataaagaatgtatttaaagga-ttgtcggac 17524900  T
Q  237 cacctttatttttaatgcattgtattttacctttcctttaagttcctgcaa-tttaaacttaatgccttaactttgctttt-aaaaccttttttctgtcg 334  Q
     |||||||||||||||||||| || ||||  ||| ||||||||| || ||| |||||| ||||| |||| |||||| |||| |||||||||||| | |||    
T  17524899 aacctttatttttaatgcattataatttattttttctttaagtttctacaattttaaaattaattcctttactttgtttttaaaaaccttttttttatcg 17524800  T
Q  335 aaa 337  Q
    |||    
T  17524799 aaa 17524797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 112 - 255
Target Start/End: Original strand, 1177202 - 1177349
Alignment:
Q  112 tgtataaataagagttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaag 211  Q
    ||||||||||  |||||| ||||| ||||| || ||||||||| ||||||| |||||||||||| || ||||||  | ||||||||||||||||||||||    
T  1177202 tgtataaatagtagttttgcataggaaaacaggacgcaaatcatctatacagaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaag 1177301  T
Q  212 a----atgtatgtaaaggatttgtcgaaccacctttatttttaatgca 255  Q
    |    |||||||||||||||||||||||||||||||||||||||||||    
T  1177302 aatacatgtatgtaaaggatttgtcgaaccacctttatttttaatgca 1177349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 163 - 296
Target Start/End: Complemental strand, 18713842 - 18713709
Alignment:
Q  163 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtatt 262  Q
    |||||||| |||| |||||||||||   |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||| || | |    
T  18713842 aaattctataacactcaaagtaccgtcacgagagaaaagagttatacagaatgtatgtaaaggatttgtcgaaccacctttatttttaaagcaatgcaat 18713743  T
Q  263 ttacctttcctttaagttcctgcaatttaaactt 296  Q
    ||| | || ||||||||| ||||| ||| |||||    
T  18713742 ttatcatttctttaagtttctgcacttttaactt 18713709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 115 - 280
Target Start/End: Original strand, 17947842 - 17948007
Alignment:
Q  115 ataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaa 213  Q
    |||||||  ||||||||||||  |||| |||||  ||||||| |||| ||| ||||| ||||||| ||||| ||| || |||| ||||||| ||| | ||    
T  17947842 ataaatattagttttccatagggaaaatgggtcaaaaatcacttatagaaa-ttctacaacattcgaagtaacggcgcaagaggaaagagttatataaaa 17947940  T
Q  214 tgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagtt 280  Q
    ||||||||||||||||||||||||||||||||||||||| || || | |||| ||||||||||||||    
T  17947941 tgtatgtaaaggatttgtcgaaccacctttatttttaattcaatgcaatttatctttcctttaagtt 17948007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 191 - 296
Target Start/End: Original strand, 14762985 - 14763090
Alignment:
Q  191 cgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagttcctgcaattt 290  Q
    |||||||||||||| ||| ||||||||||||||||| || ||||||||||||||||||||||||| || | |||| |||| ||||||||| ||||| |||    
T  14762985 cgagagaaaagagttatacagaatgtatgtaaaggagttctcgaaccacctttatttttaatgcaatgcaatttatcttttctttaagtttctgcacttt 14763084  T
Q  291 aaactt 296  Q
     |||||    
T  14763085 taactt 14763090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 40 - 306
Target Start/End: Original strand, 31126065 - 31126351
Alignment:
Q  40 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aa 138  Q
    ||||||||||||| ||||||||||||||| |||||| ||  ||||||| |||||||||||  ||| |  || ||||||||||| |||||||| |||  ||    
T  31126065 tgggagacaagcgattgtctacatggaaggagtgctaatcttgggattagtttctttccac-ttatttcctatgtataaataatagttttccttagggaa 31126163  T
Q  139 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataa------------agaatgtatgtaaagga 226  Q
    |||||||| |||||| ||||||   |||||||||||| || ||||| |   || |||||||||||||||||            | |||||||||||||||    
T  31126164 aacgggtctcaaatctcctatatggaattctaaaacactcgaagtaacaacgcaagagaaaagagtcataaatctcatattttaaaatgtatgtaaagga 31126263  T
Q  227 tttgtcgaaccacctttatttttaatgca-------ttgtattttacctttcctttaagttcctgcaattt-aaacttaatgccttaa 306  Q
    |||| |||||||||||||||| |||||||       |||||||||  |||| |||| |||| ||||||||| ||||||||||| ||||    
T  31126264 tttgccgaaccacctttatttataatgcacttgcatttgtattttttcttttctttgagtttctgcaatttaaaacttaatgcattaa 31126351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 294
Target Start/End: Complemental strand, 28712461 - 28712360
Alignment:
Q  193 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagttcctgcaattta 291  Q
    |||||||||||||||| | |||||||||||   ||||||||||||||||||||   |||||||| |||| ||||||||| ||||||||| ||||  ||||    
T  28712461 agagaaaagagtcatatataatgtatgtaatctgatttgtcgaaccaccttta-cattaatgcaatgtaatttaccttttctttaagtttctgcgtttta 28712363  T
Q  292 aac 294  Q
    |||    
T  28712362 aac 28712360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 13002854 - 13002906
Alignment:
Q  193 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 244  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  13002854 agagaaaagagtcatacagaatgtatgtaaactgatttgtcgaaccaccttta 13002906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 25945916 - 25945847
Alignment:
Q  211 gaatgtatgtaaag-gatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagtt 280  Q
    |||||||||||||  ||||||| || |||||||||||||||||||| || ||||||||| |||||||||||    
T  25945916 gaatgtatgtaaactgatttgtaga-ccacctttatttttaatgcaatgcattttacctctcctttaagtt 25945847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 24154179 - 24154229
Alignment:
Q  195 agaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 244  Q
    |||||||||||||| | ||||||||||||  ||||||||||||||||||||    
T  24154179 agaaaagagtcatacaaaatgtatgtaaactgatttgtcgaaccaccttta 24154229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 10163272 - 10163317
Alignment:
Q  193 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaacc 237  Q
    |||||||||||||||| ||||||||||||||  |||||||||||||    
T  10163272 agagaaaagagtcatatagaatgtatgtaaactgatttgtcgaacc 10163317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 16143240 - 16143188
Alignment:
Q  193 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 244  Q
    |||||||||||| ||| |||||||||||||   ||||||||||||||||||||    
T  16143240 agagaaaagagttatatagaatgtatgtaatctgatttgtcgaaccaccttta 16143188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 296
Target Start/End: Complemental strand, 16793368 - 16793265
Alignment:
Q  193 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagttcctgcaattta 291  Q
    |||||||||||||||| |  ||||||||||   ||||||||||||||  |||| |||||||||| || | ||||||||| | ||||||| ||||| |||     
T  16793368 agagaaaagagtcatacaatatgtatgtaatctgatttgtcgaaccattttta-ttttaatgcaatgcaatttaccttttccttaagtttctgcattttt 16793270  T
Q  292 aactt 296  Q
    |||||    
T  16793269 aactt 16793265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 72 - 346
Target Start/End: Complemental strand, 11361869 - 11361595
Alignment:
Q  72 tgctgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattcta 170  Q
    ||||||| |||||||| ||||||||||| |  | | ||| |||||||||||||||||||| |||  ||||| ||||| | |||||||||||| |||||||    
T  11361869 tgctgatcgtgggattagtttctttccatgc-attttctatgtataaataagagttttccgtagggaaaacaggtcgtagatcacctatacagaattcta 11361771  T
Q  171 aaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttaccttt 270  Q
    ||||| || |  |||||  ||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11361770 aaacactcgacttaccgacgcgagggaaaagagttacaaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttaccttt 11361671  T
Q  271 cctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagacgccaca 346  Q
    | ||||| || ||||||||||||||||||||||| |||||||||||||||| ||||| ||||| |||||| |||||    
T  11361670 catttaaatttctgcaatttaaacttaatgcctttactttgcttttaaaacttttttcctgtcaaaagacaccaca 11361595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 44 - 339
Target Start/End: Original strand, 9409070 - 9409370
Alignment:
Q  44 agacaagcgtttgtctacatggaagtagtgctgattgtgggattc---gtttctttccaagttagtatctt-tgtataaataagagttttccatagaa-a 138  Q
    |||||| || ||||||||||||||| |||| |||| ||||||||    |||| |||||| |||| | || | ||||||||||  ||||||||||||   |    
T  9409070 agacaaacggttgtctacatggaagaagtgttgatcgtgggattatttgtttttttcca-gttattttcctatgtataaatagtagttttccatagggga 9409168  T
Q  139 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 238  Q
    ||||||||||||||||| |||| | |||||||||||| || ||||||||| || |||||||| ||| |||||||||||||||||||||||||||||||||    
T  9409169 aacgggtcgcaaatcacttatatagaattctaaaacactcgaagtaccggcgcaagagaaaaaagttataaagaatgtatgtaaaggatttgtcgaacca 9409268  T
Q  239 cctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgc-ttttaaaaccttttttctgtcgaaa 337  Q
    ||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||| | || ||||||| ||||||||||  |||||||||| ||    
T  9409269 cctttatttttaatgcattgtattttatctttcctttaagtttatgcaatttaaacttaatacttttactttgctttttaaaaccccttttctgtcgtaa 9409368  T
Q  338 ga 339  Q
    ||    
T  9409369 ga 9409370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 114 - 296
Target Start/End: Complemental strand, 16675269 - 16675086
Alignment:
Q  114 tataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaaga 212  Q
    ||||||||  ||||||||||| |||||||||||| |||||| | |||| | | |||||||||| || ||||||||| ||||||||| ||||| ||| |||    
T  16675269 tataaatagtagttttccatatgaaaaacgggtcacaaatcccttatagata-ttctaaaacactcgaagtaccggtgcgagagaagagagttatacaga 16675171  T
Q  213 atgtatgt-aaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 296  Q
    |||||||| ||| ||||||||||||||| |||||||| |||||| |  | ||||||||| ||||| ||| ||||| |||||||||    
T  16675170 atgtatgtaaaatgatttgtcgaaccacttttattttaaatgcaatacaatttaccttttctttatgtttctgcattttaaactt 16675086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 5358102 - 5358040
Alignment:
Q  193 agagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgca 255  Q
    |||||||||||||||| | |||||||||||| |||||||||||| ||||||||||||||||||    
T  5358102 agagaaaagagtcatacataatgtatgtaaatgatttgtcgaactacctttatttttaatgca 5358040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 280
Target Start/End: Complemental strand, 4697638 - 4697470
Alignment:
Q  112 tgtataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 210  Q
    ||||||||||  ||||||||||| | |||| | |||||||||||| |||| ||| |||||||||| |||||| ||||| | ||||||| | ||| ||| |    
T  4697638 tgtataaatagtagttttccatatggaaaatgagtcgcaaatcacttatagaaa-ttctaaaacactcaaagcaccggcgtgagagaacaaagttataca 4697540  T
Q  211 gaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagtt 280  Q
     |||||||||||   |||| |||||||||||||||  ||||||||| |  | ||||||||| |||||||||    
T  4697539 aaatgtatgtaatctgattcgtcgaaccaccttta-ctttaatgcaatacaatttaccttttctttaagtt 4697470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 280
Target Start/End: Original strand, 18558469 - 18558515
Alignment:
Q  234 aaccacctttatttttaatgcattgtattttacctttcctttaagtt 280  Q
    |||||||||||||||||||||| || ||||||| |||||||||||||    
T  18558469 aaccacctttatttttaatgcaatgcattttacatttcctttaagtt 18558515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 244
Target Start/End: Complemental strand, 12424927 - 12424798
Alignment:
Q  112 tgtataaataagagttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggag-cgagagaaaagagtcataa 209  Q
    ||||||||||| |||||| ||||| |||||||||||||||||||    || | |||||||| ||  || ||||| ||| | | ||||||||||||||||     
T  12424927 tgtataaataatagtttttcataggaaaaacgggtcgcaaatca----tatagaattctaacac--tcgaagtatcggcgtctagagaaaagagtcatac 12424834  T
Q  210 agaatgtatgtaaa-ggatttgtcgaaccaccttta 244  Q
    | ||||||||||||   |||||||||||||||||||    
T  12424833 aaaatgtatgtaaaccaatttgtcgaaccaccttta 12424798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 26654144 - 26654195
Alignment:
Q  193 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttt 243  Q
    |||||||||||||||| | ||||||||||| | |||||||||||||||||||    
T  26654144 agagaaaagagtcatacataatgtatgtaatatgatttgtcgaaccaccttt 26654195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 24924958 - 24924906
Alignment:
Q  193 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 244  Q
    |||||||||||||||| | |||||||||||   ||||||||||||||||||||    
T  24924958 agagaaaagagtcatacataatgtatgtaatctgatttgtcgaaccaccttta 24924906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 7e-71; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 40 - 301
Target Start/End: Complemental strand, 20146437 - 20146169
Alignment:
Q  40 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccata-gaaa 138  Q
    ||||||||||| | |||||||||| |||| |||| |||| |||||| | |||||||||||||||| |  |||||||||||||||||||||||||| | ||    
T  20146437 tgggagacaagtgattgtctacatagaaggagtgttgatcgtgggactagtttctttccaagttatttgctttgtataaataagagttttccatatggaa 20146338  T
Q  139 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 238  Q
    || |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||| | | ||||    
T  20146337 aatgggtcgcaaatcacctatacaaaattctaaaacactcaaagtaccggtgcgagagaaaagagtcataaag-atgtatgtaaaggattttttggacca 20146239  T
Q  239 cctttatttttaatgca-------ttgtattttacctttcctttaagttcctgcaatttaaacttaatgc 301  Q
     ||||||||||||||||       || |||||| ||||| ||||||||| ||||||||||||||||||||    
T  20146238 tctttatttttaatgcacttgcatttttatttttccttttctttaagtttctgcaatttaaacttaatgc 20146169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 40 - 320
Target Start/End: Original strand, 11013745 - 11014027
Alignment:
Q  40 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtat-ctttgtataaataagagttttccataga-a 137  Q
    ||||||||||| | ||||||||||||||| ||||||||| ||||||||    | |||||| |||| | | || |||||| ||| |||||||||||||  |    
T  11013745 tgggagacaagtggttgtctacatggaagaagtgctgatcgtgggattgtactttttcca-gttatttttctatgtatatataggagttttccataggta 11013843  T
Q  138 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 237  Q
    ||| |||| ||||||||||||||||||||| ||||||| || || |||| |   ||||||||||||||||||||||| ||||||||||||||||||| ||    
T  11013844 aaatgggttgcaaatcacctatacaaaattttaaaacactcgaaataccagcttgagagaaaagagtcataaagaatatatgtaaaggatttgtcgagcc 11013943  T
Q  238 acctttatttttaatgcattgtattttacctttcctttaagttcctgcaa-tttaaacttaatgccttaactttgcttttaaaa 320  Q
    ||||||||||||||||||||||| ||||  ||||||||||||| | | || ||||||||||||||||| |||||||||||||||    
T  11013944 acctttatttttaatgcattgtactttatttttcctttaagtttcaggaattttaaacttaatgcctttactttgcttttaaaa 11014027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 40 - 290
Target Start/End: Complemental strand, 33103273 - 33103021
Alignment:
Q  40 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtatctt-tgtataaataagagttttccataga-- 136  Q
    ||||||||||| | ||||||||||||||| |||| |||||||||||||    | |||||| |||| | |  | ||||||||||  ||||||||||||       
T  33103273 tgggagacaagtggttgtctacatggaagaagtgttgattgtgggattatgctttttcca-gttattttggtatgtataaatagtagttttccatagggg 33103175  T
Q  137 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 236  Q
    ||||| |||||||||||||||||||| |||||||||||| || ||||||||  | ||||||||||||||||| |||||||||||||||||||||||||||    
T  33103174 aaaacaggtcgcaaatcacctatacataattctaaaacactcgaagtaccgacgtgagagaaaagagtcatatagaatgtatgtaaaggatttgtcgaac 33103075  T
Q  237 cacctttatttttaatgcattgtattttacctttcctttaagttcctgcaattt 290  Q
     || ||||||||||||||| || | |||| |||||||||||||| |||||||||    
T  33103074 tacatttatttttaatgcaatgcaatttatctttcctttaagtttctgcaattt 33103021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 40 - 252
Target Start/End: Original strand, 13201980 - 13202192
Alignment:
Q  40 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtat-ctttgtataaataagagttttccatag-aa 137  Q
    ||||||||||||| ||||||| ||||||| ||||||||| ||||  || |  | |||||| |||| | | || ||||||||||  |||||| ||||| ||    
T  13201980 tgggagacaagcggttgtctaaatggaagaagtgctgatcgtggagttaggctttttcca-gttattttgctatgtataaatagtagtttttcataggaa 13202078  T
Q  138 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 237  Q
    ||||  |||||||||||| |||| ||| ||||| |||| || || |||||| ||||||||||| ||| ||| | ||||||||||||||||||||||||||    
T  13202079 aaacatgtcgcaaatcacttatagaaa-ttctacaacactcgaaataccggcgcgagagaaaatagttatacataatgtatgtaaaggatttgtcgaacc 13202177  T
Q  238 acctttatttttaat 252  Q
    |||||||||||||||    
T  13202178 acctttatttttaat 13202192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 112 - 277
Target Start/End: Original strand, 20150422 - 20150588
Alignment:
Q  112 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 210  Q
    ||||||||||   |||||||||||  |||||||||| ||||||||||||||| ||||||| |||| || ||||||||  ||||||||||| ||||||| |    
T  20150422 tgtataaatagttgttttccatagggaaaacgggtctcaaatcacctatacataattctacaacactcgaagtaccgacgcgagagaaaaaagtcataca 20150521  T
Q  211 gaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaa 277  Q
     |||| ||| |||||||||||| ||||||||||||||||||| || | || |||| |||| ||||||    
T  20150522 aaatgcatgcaaaggatttgtcaaaccacctttatttttaatacaatataatttatcttttctttaa 20150588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 124 - 296
Target Start/End: Original strand, 36571655 - 36571826
Alignment:
Q  124 agttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 222  Q
    |||||||||||| ||||| |||||||||||||| |||| ||| ||||| |||| || ||||||  |  |||||||||||||| ||| | |||||||||||    
T  36571655 agttttccataggaaaaatgggtcgcaaatcacttatagaaa-ttctacaacactcgaagtactagcacgagagaaaagagttatacataatgtatgtaa 36571753  T
Q  223 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 296  Q
    ||||||||||||||||||||||||||||||||| || | || | |||| ||||||||| ||||| ||| |||||    
T  36571754 aggatttgtcgaaccacctttatttttaatgcaatgcaattaatcttt-ctttaagtttctgcagttttaactt 36571826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 126 - 296
Target Start/End: Original strand, 22607834 - 22608003
Alignment:
Q  126 ttttccatagaa-aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaag 224  Q
    |||||||||||  |||||||||||||||||| |||  ||  ||||| |||| || ||||||||  || |||||||||||| ||||| |||||||||||||    
T  22607834 ttttccatagaggaaacgggtcgcaaatcacttatggaat-ttctataacaatcgaagtaccgtcgcaagagaaaagagttataaaaaatgtatgtaaag 22607932  T
Q  225 gatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 296  Q
    ||| ||  ||||||||||||||||||||||| |||| |||| ||||||||||| || ||||||||| |||||    
T  22607933 gatctgctgaaccacctttatttttaatgcaatgtagtttatctttcctttaaatt-ctgcaattttaactt 22608003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 115 - 280
Target Start/End: Complemental strand, 17615439 - 17615274
Alignment:
Q  115 ataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaa 213  Q
    |||||||  ||||||||||||  |||||||||| | |||||| |||| ||| ||||| |||| || |||||| || | |||| |||||||| | | | ||    
T  17615439 ataaatagtagttttccatagggaaaacgggtcacgaatcacttatagaaa-ttctacaacactcgaagtacaggcgggagaaaaaagagttacacataa 17615341  T
Q  214 tgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagtt 280  Q
    ||||||||||||||||||||||| ||||||||||| |||||| || | || |||||| |||||||||    
T  17615340 tgtatgtaaaggatttgtcgaacaacctttattttgaatgcaatgcagttaaccttttctttaagtt 17615274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 253
Target Start/End: Original strand, 22620063 - 22620153
Alignment:
Q  163 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatg 253  Q
    |||||||| |||| || ||||||| ||||||||||||| ||| ||  | |  ||||||||| |||||||||||||||||||||||||||||    
T  22620063 aaattctacaacactcgaagtaccagagcgagagaaaatagttattcaaaccgtatgtaaaagatttgtcgaaccacctttatttttaatg 22620153  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 280
Target Start/End: Original strand, 22533687 - 22533829
Alignment:
Q  137 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggag-cgagagaaaagagtcataaagaatgtatgtaaag-gatttgtcga 234  Q
    |||| |||||||||||||  |||| ||| ||||| |||||||||| |||||||| | || |||| |||| ||| ||||||||||||||  ||||||| ||    
T  22533687 aaaatgggtcgcaaatcatttatagaaa-ttctacaacattcaaactaccggagtctagggaaacgagttatacagaatgtatgtaaactgatttgtaga 22533785  T
Q  235 accacctttatttttaatgcattgtattttacctttcctttaagtt 280  Q
     |||| |||| |||||||||| || ||||||| |||||||||||||    
T  22533786 -ccac-tttacttttaatgcaatgcattttacttttcctttaagtt 22533829  T

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Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 112 - 175
Target Start/End: Original strand, 13232737 - 13232801
Alignment:
Q  112 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaaca 175  Q
    ||||||||||| ||||||||||||  ||||||| ||||||||||||||| || ||||||||||||    
T  13232737 tgtataaataatagttttccatagggaaaacggatcgcaaatcacctatgcataattctaaaaca 13232801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 224 - 296
Target Start/End: Complemental strand, 20866293 - 20866221
Alignment:
Q  224 ggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 296  Q
    ||||||||||||||||||||||||||||||||    | |||| |||| ||||||||| ||||||||| |||||    
T  20866293 ggatttgtcgaaccacctttatttttaatgcaacacaatttatcttttctttaagtttctgcaattttaactt 20866221  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 20146580 - 20146549
Alignment:
Q  1 ttggacttagcattgaaaagtctcgaagcctt 32  Q
    ||||||||||||||||||||||||||||||||    
T  20146580 ttggacttagcattgaaaagtctcgaagcctt 20146549  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 274
Target Start/End: Complemental strand, 20886610 - 20886571
Alignment:
Q  235 accacctttatttttaatgcattgtattttacctttcctt 274  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  20886610 accacctttatttttaatgcaatgcattttacctttcctt 20886571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 23455242 - 23455191
Alignment:
Q  194 gagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 244  Q
    ||||||||||||||| | ||||||||||| | ||||||||||||||||||||    
T  23455242 gagaaaagagtcatacaaaatgtatgtaatatgatttgtcgaaccaccttta 23455191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 266
Target Start/End: Complemental strand, 18780712 - 18780587
Alignment:
Q  142 gggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggag-cgagagaaaagagtcataaagaatgtatgtaaag-gatttgtcgaac-ca 238  Q
    |||||||||||||  |||||| ||||||| |||| ||||| |||||| | | || |||| |||| ||| ||||||||||||||| ||||||| || | |     
T  18780712 gggtcgcaaatca--tatacagaattctacaacactcaaactaccggcgtccagggaaacgagttatacagaatgtatgtaaagtgatttgtagaccacc 18780615  T
Q  239 cctttatttttaatgcattgtattttac 266  Q
    |||||  ||||||||||||| |||||||    
T  18780614 ccttttattttaatgcattgcattttac 18780587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 40 - 301
Target Start/End: Original strand, 5582 - 5851
Alignment:
Q  40 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccata-gaaa 138  Q
    ||||||||||||| ||||||| ||||||| |||| |||| |||||||| ||||| |||||||||| |  |||||||||||||||||||||| ||| | ||    
T  5582 tgggagacaagcggttgtctatatggaaggagtgttgatcgtgggattagtttcattccaagttatttgctttgtataaataagagttttctatagggaa 5681  T
Q  139 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 238  Q
    ||||||||| |||||||||||||| |||||||||||  |  ||||||||   ||||| ||||||||||||| |||||||||||||| |||||||| ||||    
T  5682 aacgggtcgtaaatcacctatacagaattctaaaacgcttgaagtaccgacacgagaaaaaagagtcataaggaatgtatgtaaagaatttgtcggacca 5781  T
Q  239 cctttatttttaatgca-ttg------tattttacctttcctttaagttcctgcaatttaaacttaatgc 301  Q
    ||||||||||||||||| |||      |||||| ||||| |||||||||  |||||||||||||||||||    
T  5782 cctttatttttaatgcacttgcattgttatttttccttttctttaagtttttgcaatttaaacttaatgc 5851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 40 - 346
Target Start/End: Complemental strand, 21097 - 20793
Alignment:
Q  40 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatagaaa- 138  Q
    ||||||||||||| ||||| ||||||||| |||| |||| |||||||| |||||||||||  ||| |  || ||||||||||  ||| ||||||||  |     
T  21097 tgggagacaagcggttgtcaacatggaaggagtgttgatcgtgggattagtttctttccac-ttatttcctatgtataaatagtagtcttccatagggac 20999  T
Q  139 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 238  Q
    || |||||||||||||| |||| | |||||||||||| |  ||||||     |||||||||||||||||||||||||||||||||| |||||| ||||||    
T  20998 aatgggtcgcaaatcacgtata-ataattctaaaacacttgaagtactaacacgagagaaaagagtcataaagaatgtatgtaaagaatttgtggaacca 20900  T
Q  239 cctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaag 338  Q
    |||||||||| ||||||||| |||||  |||||||||||||| ||||| |||||||||||||| || |   | ||||||||||| |||||||||| ||||    
T  20899 cctttattttaaatgcattgcattttttctttcctttaagtttctgcattttaaacttaatgcatttatactacttttaaaacc-tttttctgtcaaaag 20801  T
Q  339 acgccaca 346  Q
    ||||||||    
T  20800 acgccaca 20793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 40 - 276
Target Start/End: Original strand, 374041 - 374275
Alignment:
Q  40 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattc-gtttctttccaagttagtat-ctttgtataaataagagttttccatagaa 137  Q
    ||||||||||||| ||||||||||||||| ||||||||| ||| ||||  | || ||||  ||||| | | || ||||||||||  ||||||||||||      
T  374041 tgggagacaagcggttgtctacatggaagaagtgctgatcgtgagattttgcttttttc--agttattttgctatgtataaatagtagttttccataggg 374138  T
Q  138 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 237  Q
    |||  ||||||||||||| |||| ||| | ||| |||| ||||||||| || ||||||||||||||| ||| | ||||||||||||| ||||||||||||    
T  374139 aaaacggtcgcaaatcacttatagaaa-tgctacaacactcaaagtacaggcgcgagagaaaagagt-atacaaaatgtatgtaaagtatttgtcgaacc 374236  T
Q  238 acctttatttttaatgcattgtattttacctttccttta 276  Q
    |||||||||||||||||| || | |||| ||||||||||    
T  374237 acctttatttttaatgcaatgcaatttatctttccttta 374275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 124 - 296
Target Start/End: Complemental strand, 17392 - 17221
Alignment:
Q  124 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 222  Q
    ||||||||||||  |||||||||| |||||||| |||| ||| || || |||| || | ||||||| ||||||||||||||| ||| |||||||||||||    
T  17392 agttttccatagggaaaacgggtcacaaatcacttatagaaa-ttgtacaacactcga-gtaccggcgcgagagaaaagagttatacagaatgtatgtaa 17295  T
Q  223 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 296  Q
    ||||||||||||||||||||||||||||| ||| || | |||| | || ||||||||| ||||| ||| |||||    
T  17294 aggatttgtcgaaccacctttatttttaaagcaatgcaatttatcatttctttaagtttctgcacttttaactt 17221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 181 - 296
Target Start/End: Complemental strand, 4661 - 4546
Alignment:
Q  181 agtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagtt 280  Q
    |||||||| ||||||||||||||| ||| |||||| || |||| ||||||| ||||||||||||||||||| ||| || | ||||   || |||||||||    
T  4661 agtaccggcgcgagagaaaagagttatacagaatgcatttaaaagatttgtagaaccacctttatttttaaagcaatgcaatttattatttctttaagtt 4562  T
Q  281 cctgcaatttaaactt 296  Q
     ||||| ||| |||||    
T  4561 tctgcacttttaactt 4546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 112 - 224
Target Start/End: Complemental strand, 13104 - 12991
Alignment:
Q  112 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 210  Q
    ||||||||||  ||||||||||||  ||||||||||||||||||||||| || |||||||||||| || ||||||  | |||||||||||||||||||||    
T  13104 tgtataaatagtagttttccatagggaaaacgggtcgcaaatcacctatgcagaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaa 13005  T
Q  211 gaatgtatgtaaag 224  Q
    ||||||||||||||    
T  13004 gaatgtatgtaaag 12991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 112 - 265
Target Start/End: Complemental strand, 20725 - 20572
Alignment:
Q  112 tgtataaataagagttttccatagaaaa-acgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 210  Q
    ||||||||||| ||||||||||||  || |||||||||||||||| || | ||  |||||||||| || ||||||||| ||||||||||||||| ||| |    
T  20725 tgtataaataatagttttccataggcaagacgggtcgcaaatcacttacagaac-ttctaaaacactcgaagtaccggcgcgagagaaaagagttataca 20627  T
Q  211 gaatgtatgt-aaaggatttgtcgaaccacctttatttttaatgcattgtatttta 265  Q
     ||||||||| |||  ||||||| ||||||||||| |||||||||| |||| ||||    
T  20626 taatgtatgtgaaataatttgtcaaaccaccttta-ttttaatgcaatgtaattta 20572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1102 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 248
Target Start/End: Original strand, 859 - 996
Alignment:
Q  112 tgtataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 210  Q
    ||||||||||  ||||||||||| | ||||||||| ||||||||| |||| ||| ||| |||||| || ||||||||| |||||| | |||||| ||| |    
T  859 tgtataaatagtagttttccatacggaaaacgggttgcaaatcacttatagaaa-ttccaaaacactcgaagtaccggcgcgagaaagaagagttataca 957  T
Q  211 gaatgtatgt-aaaggatttgtcgaaccacctttatttt 248  Q
     ||||||||| ||| ||||||| |||| |||||||||||    
T  958 taatgtatgtaaaatgatttgttgaacaacctttatttt 996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 5971 - 6035
Alignment:
Q  40 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaagtta 104  Q
    ||||||||||||| ||| ||||||||||  ||||||||| |||||||| ||||||||||||||||    
T  5971 tgggagacaagcggttgcctacatggaacgagtgctgatcgtgggattagtttctttccaagtta 6035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 244
Target Start/End: Original strand, 5048 - 5177
Alignment:
Q  112 tgtataaataagagttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggag-cgagagaaaagagtcataa 209  Q
    ||||||||||| |||||| ||||| |||||||||||||||||||    || | |||||||| ||  || ||||| ||| | | ||||||||||||||||     
T  5048 tgtataaataatagtttttcataggaaaaacgggtcgcaaatca----tatagaattctaacac--tcgaagtatcggcgtctagagaaaagagtcatac 5141  T
Q  210 agaatgtatgtaaa-ggatttgtcgaaccaccttta 244  Q
    | ||||||||||||   |||||||||||||||||||    
T  5142 aaaatgtatgtaaaccaatttgtcgaaccaccttta 5177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 1326 - 1282
Alignment:
Q  235 accacctttatttttaatgcattgtattttacctttcctttaagtt 280  Q
    |||||||||||||| |||||| || |||||||||||||||||||||    
T  1326 accacctttatttt-aatgcaatgcattttacctttcctttaagtt 1282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 38915 - 38967
Alignment:
Q  193 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 244  Q
    |||||||||||||||| | |||||||||||   ||||||||||||||||||||    
T  38915 agagaaaagagtcatataaaatgtatgtaatctgatttgtcgaaccaccttta 38967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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