View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12994_low_12 (Length: 339)
Name: NF12994_low_12
Description: NF12994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12994_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 46 - 326
Target Start/End: Original strand, 37819571 - 37819844
Alignment:
| Q |
46 |
aaataatttagtgggggcatggtgcctcaaattgacttcaagtgcattgtctggacacacgacattgacacaataataatttaaaaaggtgtaagtgatt |
145 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37819571 |
aaataatttagtgggggcatggtgccccaaattgacttcaagtgcattatccggacacacgacatggacacaataataatttaaaaaggtgtaagtgatt |
37819670 |
T |
|
| Q |
146 |
gaacataactacatttgtcgatgtcatgtaggccgacacgacattcaatctaaggtgctgctacctagttcatttgtgacctcttatttgaagttggaga |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37819671 |
gaacataactacatttgtcgatgtcatgtaggccgacacgacattgaatctaaggtgttgctacctagttcatttgtgacctcttatttgaagttggaga |
37819770 |
T |
|
| Q |
246 |
ataagattacattattaagaaagaaga-aaataag-tagaagaagggaggtgaagtacctgtaatccaagaaatccaaacaga |
326 |
Q |
| |
|
|||||||| |||||| | | | |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37819771 |
ataagatt---------agaaagtacattagtaagaaagaagaagggaggtgaagtacctgtaatccaagaaatccaaacaga |
37819844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 326
Target Start/End: Original strand, 37811888 - 37811916
Alignment:
| Q |
298 |
gtacctgtaatccaagaaatccaaacaga |
326 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
37811888 |
gtacctgtaatccaagaaatccaaacaga |
37811916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University