View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12994_low_13 (Length: 327)
Name: NF12994_low_13
Description: NF12994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12994_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 11 - 309
Target Start/End: Original strand, 29032405 - 29032703
Alignment:
| Q |
11 |
cacagagcatgattattttcaatctttccataccatggaacaagcactaagaactctcaacggaatgcctccaatggaagaaccagaaaaccaccaccac |
110 |
Q |
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| T |
29032405 |
cacagagcataattatttcaaatctttccataccatggaacaagcactaagaactctcaacggaatgcctccaatggaagaacaagacaaccaccaccac |
29032504 |
T |
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| Q |
111 |
cacnnnnnnncttcctcttcctcttccacttctgcaaccaacaaaacaggcgccacggtacgataccgtggagtccgacgccgaccatggggccgttatg |
210 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29032505 |
cacaaaaaaacttcctcttcctcttccacttctgcaaccaacaaaactggcgccacggtacgataccgtggagtccgacgccgaccatggggccgttatg |
29032604 |
T |
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| Q |
211 |
cagccgagataagagacccacattccaaagaacgccgctggctcggaactttcgataccgccgaacaagctgcttgcgcctacgactccgccgctctat |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29032605 |
cagccgagataagagacccacattccaaagaacgccgctggctcggaactttcgataccgccgaacaagctgcttgcgcctacgactccgccgctctat |
29032703 |
T |
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Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 174 - 265
Target Start/End: Original strand, 14158570 - 14158661
Alignment:
| Q |
174 |
taccgtggagtccgacgccgaccatggggccgttatgcagccgagataagagacccacattccaaagaacgccgctggctcggaactttcga |
265 |
Q |
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| T |
14158570 |
taccgcggagttcgccgcagaccatggggccgctatgcagctgagataagagaccctcagtccaaagaacgccgctggcttggaaccttcga |
14158661 |
T |
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