View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12994_low_14 (Length: 304)
Name: NF12994_low_14
Description: NF12994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12994_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 286
Target Start/End: Original strand, 26642831 - 26643104
Alignment:
| Q |
13 |
gagatatagagtaggggttcgccgtttcaaatttcaatgattctgttttactggttgataatgctgtgcttgaccttatgttggaagttgaagtttttct |
112 |
Q |
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| T |
26642831 |
gagatatagagtaggggttcgccgtttcaaatttcaatgattctgttttactggttgataatgctgtgcttgaccttatgttggaagttgaagtttttct |
26642930 |
T |
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| Q |
113 |
tgtgctttgatatcatccttgttcaattgcgttgatgaaagtctgatatattattctctgttggagtacagagtttgatctatctgcgggtcgtcctggg |
212 |
Q |
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| T |
26642931 |
tgtgctttgatatcatccttgttcaattgcgttgatgaaagtctgatatattgttctctgttggagtacagagtttgatctatctgcgggtcgtcctggg |
26643030 |
T |
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| Q |
213 |
gaccagtcaatccacagagtttttgtggattcaggagggtgtcattgtattgccactattgttggtccgggggg |
286 |
Q |
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| T |
26643031 |
gaccagtcaatccacagagtttttgtggatccaggagggtgtcattgtattgccactgttgttggtccgggggg |
26643104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 8 - 286
Target Start/End: Original strand, 26639343 - 26639622
Alignment:
| Q |
8 |
gagcagagatatagagtaggggttcgccgtttcaaatttcaatgattctgttttactggttgataatgctgtgcttgaccttatgttggaagttgaagtt |
107 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26639343 |
gagctgagatatagagtaggggttcgccgcttcaaatttcaatgattctgttttactggttgataatgctgtgcttgaccttatgttggaagttgaagtt |
26639442 |
T |
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| Q |
108 |
tttctt-gtgctttgatatcatccttgttcaattgcgttgatgaaagtctgatatattattctctgttggagtacagagtttgatctatctgcgggtcgt |
206 |
Q |
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||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26639443 |
tttttttgtgctttgatatcatccttgttcaattgcgttgatgaaagtctgatatactattctctgttggagtacagagtttgatctatctgcgggtcgt |
26639542 |
T |
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| Q |
207 |
cctggggaccagtcaatccacagagtttttgtggattcaggagggtgtcattgtattgccactattgttggtccgggggg |
286 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26639543 |
cctggggaccagtcaatccacagagtttttgtggatccaggagggtgtcattgtattgccactgttgttggtccgggggg |
26639622 |
T |
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