View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12994_low_16 (Length: 258)
Name: NF12994_low_16
Description: NF12994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12994_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 1460855 - 1460619
Alignment:
| Q |
19 |
caaaagcaccaaaagattgtcgattccatctctatacttgcggtgttgtatcggatacatcacaataatctcaatgagtattccaacagcaattgaacaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1460855 |
caaaagcaccaaaagattgtcgattccatctctatacttgcggtgttgtatcggatacatcacaataatctcaatgagtattccaacagcaattgaacaa |
1460756 |
T |
|
| Q |
119 |
atgcagaaatttccaattgctgtaagcacttgttgaaagtgtccaacttggttagtactatcaaccaaatgagctgctttgccgaaaaaggtgtggacac |
218 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1460755 |
atacagaaatttccaattgctgtaagcacttgttgaaagtgtccaacttggttagtactatcaaccaaatgagctgctttgccgaaaaaggtgtggacac |
1460656 |
T |
|
| Q |
219 |
cagttgcatacacaattgcttcaatctcacccttctt |
255 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
1460655 |
cagttgcatacacaattgcttcaatctcacccttctt |
1460619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 1498481 - 1498717
Alignment:
| Q |
19 |
caaaagcaccaaaagattgtcgattccatctctatacttgcggtgttgtatcggatacatcacaataatctcaatgagtattccaacagcaattgaacaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| | |||||||| ||| ||||||||| |
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| T |
1498481 |
caaaagcaccaaaagattgtcgattccatctctatacttgcggtgttgtatcggatacatcactataagctcaaccaatattccaatagcgattgaacaa |
1498580 |
T |
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| Q |
119 |
atgcagaaatttccaattgctgtaagcacttgttgaaagtgtccaacttggttagtactatcaaccaaatgagctgctttgccgaaaaaggtgtggacac |
218 |
Q |
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| T |
1498581 |
atgcagaagtttccaattgctgtaagcactttctgaaagtgtccaacttgattagtactatcaaccaaatgagccgctttaccgaaaaaagtatgcacac |
1498680 |
T |
|
| Q |
219 |
cagttgcatacacaattgcttcaatctcacccttctt |
255 |
Q |
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|||| ||| |||| ||||||||||||||||||||| |
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| T |
1498681 |
cagtagcaataacaactgcttcaatctcacccttctt |
1498717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 23 - 255
Target Start/End: Complemental strand, 26788420 - 26788188
Alignment:
| Q |
23 |
agcaccaaaagattgtcgattccatctctatacttgcggtgttgtatcggatacatcacaataatctcaatgagtattccaacagcaattgaacaaatgc |
122 |
Q |
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|||||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||| |
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| T |
26788420 |
agcaccaaaagattatcaattccatctctatagttgcgatgttgtatcggatacatcacaataatctcaacgagtattccaactgcaattgaacagatgc |
26788321 |
T |
|
| Q |
123 |
agaaatttccaattgctgtaagcacttgttgaaagtgtccaacttggttagtactatcaaccaaatgagctgctttgccgaaaaaggtgtggacaccagt |
222 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26788320 |
agaaatttccaattgctgtaagcactttttgaaagtgtccaacttgattagtactgtcaaccaaatgagctgcttttccgaaaaaggtgtggacaccagt |
26788221 |
T |
|
| Q |
223 |
tgcatacacaattgcttcaatctcacccttctt |
255 |
Q |
| |
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|||||||||||||||||| |||||||||||||| |
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| T |
26788220 |
tgcatacacaattgcttcgatctcacccttctt |
26788188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 26 - 255
Target Start/End: Complemental strand, 50274665 - 50274436
Alignment:
| Q |
26 |
accaaaagattgtcgattccatctctatacttgcggtgttgtatcggatacatcacaataatctcaatgagtattccaacagcaattgaacaaatgcaga |
125 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||| | ||||| |||||||||||||||||||| |||||||||| |
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| T |
50274665 |
accaaaagattgtcaattccgtctctatacttgcggtgttgtatcggatacatgacaacgagttcaatcagtattccaacagcaattgagcaaatgcaga |
50274566 |
T |
|
| Q |
126 |
aatttccaattgctgtaagcacttgttgaaagtgtccaacttggttagtactatcaaccaaatgagctgctttgccgaaaaaggtgtggacaccagttgc |
225 |
Q |
| |
|
|||| ||||||||||| || |||| |||||||| |||||||| || || || |||||||||||||| ||||| || ||||| ||||| || ||||| || |
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| T |
50274565 |
aattaccaattgctgttaggactttctgaaagtgaccaacttgattggtgctgtcaaccaaatgagcagctttaccaaaaaatgtgtgcactccagtagc |
50274466 |
T |
|
| Q |
226 |
atacacaattgcttcaatctcacccttctt |
255 |
Q |
| |
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| |||| ||||||||||||||| ||||| |
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| T |
50274465 |
aattacaactgcttcaatctcacctttctt |
50274436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 53076953 - 53077160
Alignment:
| Q |
19 |
caaaagcaccaaaagattgtcgattccatctctatacttgcggtgttgtatcggatacatcacaataatctcaatgagtattccaacagcaattgaacaa |
118 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| ||||||||||| || || || ||||| || || |||||| | || ||||| ||||| |||||| |
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| T |
53076953 |
caaaaggaccaaaagattgtcaattccatctctgtacttgcggtgctgaattgggtacatgactatgatctcagccaacataccaactgcaatcgaacaa |
53077052 |
T |
|
| Q |
119 |
atgcagaaatttccaattgctgtaagcacttgttgaaagtgtccaacttggttagtactatcaaccaaatgagctgctttgccgaaaaaggtgtggacac |
218 |
Q |
| |
|
|||||||| ||||||||||| |||||||| | ||||| || ||||||||||| ||||| || || | ||||||||||| |||||||| |||||||||| |
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| T |
53077053 |
atgcagaagtttccaattgcagtaagcaccttctgaaaatgcccaacttggttggtactgtccacaaggtgagctgctttcccgaaaaatgtgtggacac |
53077152 |
T |
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| Q |
219 |
cagttgca |
226 |
Q |
| |
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|||||||| |
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| T |
53077153 |
cagttgca |
53077160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 45199102 - 45199206
Alignment:
| Q |
22 |
aagcaccaaaagattgtcgattccatctctatacttgcggtgttgtatcggatacatcacaataatctcaatgagtattccaacagcaattgaacaaatg |
121 |
Q |
| |
|
||||||||| |||||||| |||||| |||||||||||| | || ||||||||||| |||| |||||| |||| ||||| ||||||||||| |||||| |
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| T |
45199102 |
aagcaccaatagattgtcaattccactcctatacttgcggcgctgaatcggatacatgacaacaatctcgatgaccattcccacagcaattgagcaaatg |
45199201 |
T |
|
| Q |
122 |
cagaa |
126 |
Q |
| |
|
||||| |
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|
| T |
45199202 |
cagaa |
45199206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 15867576 - 15867456
Alignment:
| Q |
19 |
caaaagcaccaaaagattgtcgattccatctctatacttgcggtgttgtatcggatacatcacaataatctcaatgagtattccaacagcaattgaacaa |
118 |
Q |
| |
|
|||||| || ||||| ||||||||||| || | ||| ||||||||||| ||||||||||| || || |||||| | || ||||| ||||| |||||| |
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| T |
15867576 |
caaaaggactaaaaggttgtcgattccttcacgatatttgcggtgttggatcggatacatgactatgatctcagccaacataccaactgcaatggaacaa |
15867477 |
T |
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| Q |
119 |
atgcagaaatttccaattgct |
139 |
Q |
| |
|
|| || || |||||||||||| |
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|
| T |
15867476 |
atacaaaagtttccaattgct |
15867456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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