View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12994_low_3 (Length: 585)
Name: NF12994_low_3
Description: NF12994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12994_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 1 - 580
Target Start/End: Original strand, 4771214 - 4771784
Alignment:
| Q |
1 |
agttgactttagcggttcccatatacatttgaccagtcaaggacccttcaagcttcagcttctaaatttctaaatgttacctaagtaaatgtattttttc |
100 |
Q |
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| T |
4771214 |
agttgactttagcggttcccatatacatttgaccagtcaaggacccttcaagcttcagcttctaaatttctaaatgttacctaagtaaatgtattttttc |
4771313 |
T |
|
| Q |
101 |
agtcagagcaattaaatcagaatcatatatatgttgattattttaaacatgctaaaacaatgtcatgtaagtagagctcaaatgataaaatgttacagag |
200 |
Q |
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| T |
4771314 |
agtcagagcaattaaatcagaatcatatatatgttgattattttaaacatgctaaaacaatgttatgtaagtagagctcaaatgataaaatgttacagag |
4771413 |
T |
|
| Q |
201 |
acatttgatatgctcggacataagtgtgtatccgcaattccttacttctcagcacctattgtaagtttcaccgctagcctttctaaaatcagataacaat |
300 |
Q |
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| T |
4771414 |
acatttgatatgctcggacataagtgtgtatccgcaattccttacttctcagcacctattgtaagtttcaccgctagcctttctaaaaccagataacaat |
4771513 |
T |
|
| Q |
301 |
attaaaacaattatacaatcaaaataaaatggtaaaaaggttcaattggtaaacatcatcgttgtaaaacatgtttatcaaaaaatcacatttcactata |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4771514 |
attaaaacaattatacaatcaaaataaaatggtaaaaaggttcaattggtaaacaccatcggtgtaaaacatgtttatcaaaaaatcacatttcactata |
4771613 |
T |
|
| Q |
401 |
gagatattttaaaaattaatataacgaagtgacacaatgaatatgattggatgcatataaaaaatacaaaaagaaaggaagattattatacctttggaga |
500 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4771614 |
gagatattttaaaaattaatataacaaagt---------aatatgattggatgcatataaaaaatacaaaaagaaaggaagattattatacctttggaga |
4771704 |
T |
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| Q |
501 |
ggagggcactagtgcacggagtttagcaagatgaccattaattctgtttcttctcttcctctctgcttccctatgcttct |
580 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4771705 |
ggagggcactagtgcacggagtttagcaagatgaccattaattctgtttcttctcttcctctctgcttccctatgattct |
4771784 |
T |
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