View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12994_low_4 (Length: 576)
Name: NF12994_low_4
Description: NF12994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12994_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 422
Target Start/End: Complemental strand, 39686435 - 39686033
Alignment:
| Q |
13 |
atcaacagagaaagttatgcatgatggcaggataaaaattcnnnnnnnnatgaagtagcatgatgatattagaattctatttttgaaggtgaataagtga |
112 |
Q |
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| T |
39686435 |
atcaacagagaaagttatgcatgatggcaggataaaa-ttctattttt-atgaagtagtatgatgat--tagaattctctttttgaaggtgaataagtgg |
39686340 |
T |
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| Q |
113 |
ggttgtctgaggtttgaacatcggtctatgcatataataaaatat-tc-ttgtcaatcgaactatgttcatggagactagactgatgacatgaaacttta |
210 |
Q |
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| T |
39686339 |
gattgtctgaggttcgaacatcggtctatacatataataatatatgtcattgtcaaccgagctatgttcgtggagact-----gatgacatgaaacttta |
39686245 |
T |
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| Q |
211 |
ttcctctaacaaaatacatgtaagtttattttttaaaacaaataaataaattcatcaaataaactcttcttctttttctagtgtgtgaaattgagttttg |
310 |
Q |
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| T |
39686244 |
ttcctctaacaaaatacatgtaagtttattttttaaaacaaataaataaattcatcaaataaactcttcttctttttctagtgtgtgaagttgagttttg |
39686145 |
T |
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| Q |
311 |
gaannnnnnnngttgccttatccggtaactgatttgcgtaaataaacaagcaaatataaaaatactatcggatgatctagtatataaggaaaaagaatca |
410 |
Q |
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| T |
39686144 |
gaattttttttgttgccttatccggtaactcatttgcgtaaataaacaagcaaatataaaaatactatcggatgatctcgtatataaggaaaaagaatca |
39686045 |
T |
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| Q |
411 |
acttcttactcc |
422 |
Q |
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| T |
39686044 |
acttcttactcc |
39686033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 477 - 560
Target Start/End: Complemental strand, 39685978 - 39685894
Alignment:
| Q |
477 |
gtttttcttctttacttagagggaataatgtcttaaaa-gtggggttaaagattgcttttgtcaaatgtgtaaactcacaccaac |
560 |
Q |
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| T |
39685978 |
gtttttcttctttacttagagggaataatgtcttaaaaagtagggttaaagattgcttttgtcaaatgtgtaaactcacaccaac |
39685894 |
T |
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