View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12994_low_6 (Length: 457)
Name: NF12994_low_6
Description: NF12994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12994_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 22 - 442
Target Start/End: Original strand, 2341022 - 2341442
Alignment:
| Q |
22 |
taaggccaatgaaaatgatgcatctatgtccaaggccagaggttctgatgctcatcaatgttgtgaaacatgctgctgaagttttcatcttgaatatctg |
121 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2341022 |
taaggccaatgaaaatgatgcatctatgcccaaggccagaggttctgatgctcatcaatgttgtgaaacatgctgctgaagttttcatcttgaatatctg |
2341121 |
T |
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| Q |
122 |
gtcttgatgtgaattgaagaagttggggtatgttgtttggatttaatgaagttggtagaaggctaattaggtttctaccattctgtgaagaaatagaact |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2341122 |
gtcttgatgtgaattgaagaagttggggtatgttgtttggatttaatgaagttggtagaaggctaattaggtttctaccattctgtgaagaaacagaact |
2341221 |
T |
|
| Q |
222 |
gttcaaagcttgtgttcttgaaagatctaaattaatgtttaagctattatcacttccattgctccaagaaccctcagtttctttcattaggcattttgtt |
321 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2341222 |
gttcaaagcttgtgttcttgagagatctaaattaatgtttaagctattatcacttccattgctccaagaaccctcagtttctttcattaggtattttgtt |
2341321 |
T |
|
| Q |
322 |
ccaccttcacaccaatccttgctttttaatgcttgcaactgcaatgcaacaccattaggttaaaacataaaagtgtaacaaagtatatctacttacatta |
421 |
Q |
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|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2341322 |
ccaccttcgcaccaatccttgctttttaatgcttctaactgcaatgcaacaccattaggttaaaacataaaagtgtaacaaagtatatctagttacatta |
2341421 |
T |
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| Q |
422 |
atttttaaactatatgatgat |
442 |
Q |
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||||||||||||||||||||| |
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| T |
2341422 |
atttttaaactatatgatgat |
2341442 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 3351957 - 3352029
Alignment:
| Q |
233 |
gtgttcttgaaagatctaaattaatgtttaagctattatcacttccattgctccaagaaccctcagtttcttt |
305 |
Q |
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||||||| ||||| |||| ||| || | | |||| |||||||||||||||||||||||||| ||| ||||||| |
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| T |
3351957 |
gtgttctagaaaggtctagattcatatctgagctgttatcacttccattgctccaagaaccttcattttcttt |
3352029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 3351830 - 3351909
Alignment:
| Q |
49 |
gtccaaggccagaggttctgatgctcatcaatgttgtgaaacatgctgctgaagttttcatcttgaatatctggtcttga |
128 |
Q |
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||||||||||| | |||| |||||||||||||||| ||||||| ||| ||| |||||||||||| ||||| |||||| |
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| T |
3351830 |
gtccaaggccataaactctgctgctcatcaatgttgttaaacatgttgcaaaagctttcatcttgaagatctgatcttga |
3351909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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