View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12994_low_7 (Length: 421)
Name: NF12994_low_7
Description: NF12994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12994_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 15 - 413
Target Start/End: Complemental strand, 43476613 - 43476219
Alignment:
| Q |
15 |
aaaagaatttaagcaagtcatggcttttcccaaaagactccactccatgtccttcaagatattcaaaataagtagaataatttcaaaatgaccaatggat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43476613 |
aaaagaatttaagcaagtcatggcttttcccaaaagactccactccatgtccttcaagatattcaaaataagtagaataatttcaaaatgaccaatggat |
43476514 |
T |
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| Q |
115 |
ctcacagttagattgatagatacaaagcaggaaatggatacaaagggaatttatagaattcatacaagctaccggccggaccaccaagccgaaaatgtgc |
214 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43476513 |
ctcacagttagattgatagatacaaagcgggaaatggatacaaagggaatttatagaattcatacaagctaccgg----accaccaagccgaaaatgtgc |
43476418 |
T |
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| Q |
215 |
aaagagttttccttctctccctccaaataaaccatccccatgacagatactttatttttgttacaccctcatttatgccaaatgtccccctctcgaagac |
314 |
Q |
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| T |
43476417 |
aaagagttttccttctctccctccaaataaaccatccccgtgacagatactttatttttgttacaccctcatttatgccaaatgtccccctctcaaagac |
43476318 |
T |
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| Q |
315 |
cgacttattcctagtgatccataatgaccaaattacagccaaccaaatgagatgtctcaacctcctccgtcttcttcctctagcaagaatgtgatgatg |
413 |
Q |
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| T |
43476317 |
cgactcattcctagtgatccataatgaccaaattacagccaaccaaatgagatgtctcaacctcttccgtctttttcctctagcaagaatgtgatgatg |
43476219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 15 - 413
Target Start/End: Original strand, 43563689 - 43564074
Alignment:
| Q |
15 |
aaaagaatttaagcaagtcatggcttttcccaaaagactccactccatgtccttcaagatattcaaaataagtagaataatttcaaaatgaccaatggat |
114 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43563689 |
aaaagaatttaagcaagtgatggcttttcccaa--gactccactccatgtccttcaagatattcaaaataagtagaataatttcaaaatgaccaatggat |
43563786 |
T |
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| Q |
115 |
ctcacagttagattgatagata----caaagcaggaaatggatacaaagggaatttatagaattcatacaagctaccggccggaccaccaagccgaaaat |
210 |
Q |
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||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43563787 |
ctcacagttagatagatagatagatacaaagcgggaaatggatacaaagggaatttatagaattcatacaagctaccgg----accaccaagccgaaaat |
43563882 |
T |
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| Q |
211 |
gtgcaaagagttttccttctctccctccaaataaaccatccccatgaca----gatactttatttttgttacaccctcatttatgccaaatgtccccctc |
306 |
Q |
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| T |
43563883 |
gtgcaaagagttttccttctctccctccaaataaaccatccccatgacagacagatactttatttttgttacaccctcatttatgccaaatgtccccctc |
43563982 |
T |
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| Q |
307 |
tcgaagaccgacttattcctagtgatccataatgaccaaattacagccaaccaaatgagatgtctcaacctcctccgtcttcttcctctagcaagaatgt |
406 |
Q |
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|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43563983 |
tcaaagaccgacttattcctagtgatccataatg---------------accaaatgagatgtctcaacctcttccgtcttcttcctctagcaagaatgt |
43564067 |
T |
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