View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12995_high_10 (Length: 380)
Name: NF12995_high_10
Description: NF12995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12995_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 364
Target Start/End: Complemental strand, 302380 - 302031
Alignment:
| Q |
16 |
cataccataaacaaaacaaaaaactttttcctgcaattcagagtaagaactcaagattgaaattttgtaattctggtggatctcaaatggaaattagtta |
115 |
Q |
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| T |
302380 |
cataccataaacaaaacaaaaaactttttcctgcaattgagagtaagaactcaagattgaaattttgtaattctggtggatctcaaatggtaattagtta |
302281 |
T |
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| Q |
116 |
gtaaatgtttaacaactttataaagctattgtgatggctagcctttacctctttttt-ctgttagcaatagctatatgtattgtagtttgttgcttgtag |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
302280 |
gtaaatgtttaacaactttataaagctattgtgatggctagcctttacctctttttttctgttagcaatagctatatgtattgtagtttgttgcttgtag |
302181 |
T |
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| Q |
215 |
aaagcgtgctattggtagtaagtgatttcaagatcaaataggacgtgaggacgtaggagaaattgatccgaacctcgataaatcttgtgtccttgactcc |
314 |
Q |
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| T |
302180 |
aaagcgtgctattggtagtaagtgatttcaagatcaaataggacgtgaggacgtaggagaaattgatccgaacctcgataaatcttgtgtccttgactcc |
302081 |
T |
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| Q |
315 |
tttcctttcattgcagttggttggctcagtttcataacaattggcatcag |
364 |
Q |
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| T |
302080 |
tttcctttcattgcagttggttggctcagtttcataacaattggcatcag |
302031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 33 - 177
Target Start/End: Original strand, 38250246 - 38250393
Alignment:
| Q |
33 |
aaaaaactttttcctgcaattcagagtaagaactcaagattgaaattttgta--attctggtggatctcaaatggaaattagttagtaaatgtttaacaa |
130 |
Q |
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| T |
38250246 |
aaaaaacattttcctgcaattcattgtaagaattcaagattgaattttttttttattctggtggatctcaaatggtaattagtaagtaaatgcctaacaa |
38250345 |
T |
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| Q |
131 |
ctttataaagctattgtgatggctagcctttacctc-ttttttctgtt |
177 |
Q |
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| T |
38250346 |
ctttataaagctattgcgatagctagcctttgcctcgttttttctgtt |
38250393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 259 - 351
Target Start/End: Complemental strand, 37458986 - 37458896
Alignment:
| Q |
259 |
gtgaggacgtaggagaaattgatccgaacctcgataaatcttgtgtccttgactcctttcctttcattgcagttggttggctcagtttcataa |
351 |
Q |
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| T |
37458986 |
gtgaggacgtaggagaaattgacccgaaccttgataaatcttgtgtcctt--cttctttccttttattgcagtttgctggcccagtttcataa |
37458896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 259 - 357
Target Start/End: Original strand, 38250639 - 38250737
Alignment:
| Q |
259 |
gtgaggacgtaggagaaattgatccgaacctcgataaatcttgtgtccttgactcctttcctttcattgcagttggttggctcagtttcataacaattg |
357 |
Q |
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| T |
38250639 |
gtgaggatgtaggagaaattgatccgaacctcaataaatcttgtgctcttaatctctctccttttatcgcagtttgctggctcagtttcataacaattg |
38250737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 38255291 - 38255385
Alignment:
| Q |
16 |
cataccataaacaaaacaaaaaactttttcctgcaattcag-------agtaagaactcaagattgaaattttgtaattctggtggatctcaaat |
103 |
Q |
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| T |
38255291 |
cataccataaacataacaaaaaacattttccagcaattcagtttaagaaataagaattcaagattgaaattttgtaattctagtggatctcaaat |
38255385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 107 - 251
Target Start/End: Original strand, 22178249 - 22178402
Alignment:
| Q |
107 |
aattagttagtaaatgtttaacaactttataaagctattgtgatggctagcctttacctcttttttctgtt---------agcaatagctatatgtattg |
197 |
Q |
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||||||||||||||| |||||||||| |||||||| |||||| |||||||||| ||||||||||||| | |||| |||||| || || |
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| T |
22178249 |
aattagttagtaaatacctaacaactttgtaaagctactgtgatagctagcctttgcctcttttttctgctttagagagaagcagtagctacataaatct |
22178348 |
T |
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| Q |
198 |
tagtttgttgcttgtagaaagcgtgctattggtagtaagtgatttcaagatcaa |
251 |
Q |
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| T |
22178349 |
tagtttgttgcttgtataaagcatggtattggtggtaagtgatttcaagatcaa |
22178402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 259 - 364
Target Start/End: Original strand, 22178507 - 22178604
Alignment:
| Q |
259 |
gtgaggacgtaggagaaattgatccgaacctcgataaatcttgtgtccttgactcctttcctttcattgcagttggttggctcagtttcataacaattgg |
358 |
Q |
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||||||||| || ||||||||||| |||||||||||||||||||| |||||||||||||||||| || | |||||||||||||||||||||| |
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| T |
22178507 |
gtgaggacgaagaagaaattgatctgaacctcgataaatcttgtg--------tcctttcctttcattgcaatttgctggctcagtttcataacaattgt |
22178598 |
T |
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