View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12995_high_13 (Length: 369)
Name: NF12995_high_13
Description: NF12995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12995_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 10 - 355
Target Start/End: Complemental strand, 6486175 - 6485830
Alignment:
| Q |
10 |
aagaatattgcggattcaaatccaacagtggactggtgaaagcaatcataatatccggtcaaaagatcttcactggtcaccaagacggtaaaatccgtgt |
109 |
Q |
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| T |
6486175 |
aagaatattgcggattcaaatccaacagtggactggtgaaagcaatcataatatccggtcaaaagatcttcactggtcaccaagacggtaaaatccgtgt |
6486076 |
T |
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| Q |
110 |
ttggaaagtttctctcaagaaccctagcgttcacaaacgtgccggaacattaccaacactcaaagacatcttcaaaagctcgattaaaccaagcaattat |
209 |
Q |
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| T |
6486075 |
ttggaaagtctctctcaagaaccctagcgttcacaaacgtgctggaacattaccaacactcaaagacatcttcaaaagctcaattaaaccaagcaattat |
6485976 |
T |
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| Q |
210 |
gtcgaggttagaaaacaccgaactgcattatggatcaaacattcggatgcagtttcatgcctaagcctttctccagacaaaacctacctctactctgctt |
309 |
Q |
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| T |
6485975 |
gtcgaggttagaaaacaccgaactgcattatggatcaaacattcggatgcagtttcatgcctaagtctttctccagacaaaacctacctctactctgctt |
6485876 |
T |
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| Q |
310 |
catgggacagaaccgtcaaagtttggagaatcgccgattcaaagtg |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6485875 |
catgggacagaaccgtcaaagtttggagaatcgccgattcaaagtg |
6485830 |
T |
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