View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12995_high_14 (Length: 321)
Name: NF12995_high_14
Description: NF12995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12995_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 40648227 - 40648534
Alignment:
| Q |
1 |
atttgaacattgattgatttcaact-gcagaatgcgtgcatcatagcagagagtttatctatgtcttggcataagggtcataagtcagacagcaagtata |
99 |
Q |
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| T |
40648227 |
atttgaacattgattgaattcaacttgcagaatgcgtgcatcatagcagagagtttatctatgtcttggcataagggtcataagtcagacagcaagtata |
40648326 |
T |
|
| Q |
100 |
agagaatcttgtagaaatatatcatatttatcacaaaccaaaccccgtgttgataataccataaactgatagaaattacattacgtcattaggattaggc |
199 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40648327 |
agagaatcttttagaaatatatcatatttatcacaaaccaaaccctgtgttgata-taccataaactgatagaaattacattacgtcattaggattaggc |
40648425 |
T |
|
| Q |
200 |
atgttgatattcgataaactaatatgggtacacacttaaatgacaaaatgataactaaggtagtgaactccttcaatttgtaatagctgatttcacggag |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40648426 |
atgttgatattcgataaactaatatgggtacacacttaaatgacaaaatgataactaaggtagtgaactccttcaatttgtaatagctgatttcacggag |
40648525 |
T |
|
| Q |
300 |
ggttattaa |
308 |
Q |
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||||||||| |
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| T |
40648526 |
ggttattaa |
40648534 |
T |
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